24 |
0.004153 |
0.4656 |
lmo1386 |
N/A |
-22.14 |
0.003328 |
2 -- 37 |
155 -- 186 |
DNA translocase |
|
_____________1____________________________________38\n_____________|____________________________________|\n__________5'-G___G________G__AAGCU______CAC_______CCGCA...UUA-3'\n______________GAA_UACGCGGC_GA_____GAUGAA___GAAAACA\n______________|||_|||:||||_:|_____||||||___|||||||\n______________CUU_AUGUGCCG_UU_____CUACUU___CUUUUGU\n3'-GUU...CUGUA___G________G__ACU________A_________UUAUU...GGA-5'\n_____________|____________________________________|\n_____________187__________________________________154\n |
31 -- 37 |
155 -- 161 |
-32.0969 kcal/mol |
6.67763 kcal/mol |
9.66922 kcal/mol |
1 38@LB@ | |@LB@ 5'-G G G AAGCU CAC CCGCA...UUA-3'@LB@ GAA UACGCGGC GA GAUGAA GAAAACA@LB@ ||| |||:|||| :| |||||| |||||||@LB@ CUU AUGUGCCG UU CUACUU CUUUUGU@LB@3'-GUU...CUGUA G G ACU A UUAUU...GGA-5'@LB@ | |@LB@ 187 154@LB@@LB@@LB@Energy -22.14 kcal/mol@LB@Hybridization Energy -32.0969 kcal/mol@LB@Unfolding Energy - mRNA 6.67763 kcal/mol@LB@Unfolding Energy - sRNA 9.66922 kcal/mol@LB@@LB@Position - mRNA 2 -- 37@LB@Position - sRNA 155 -- 186@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 155 -- 161@LB@ |
34 |
0.007076 |
0.552 |
lmo2678 |
N/A |
-19.30 |
0.013995 |
184 -- 246 |
155 -- 207 |
XRE family transcriptional regulator |
|
_____________183__________________________________________________________247\n_____________|____________________________________________________________|\n5'-GAA...AGACG____AG_____AA______A__AA______U___CUAAUUGUGGA__________U____UCAGU...AAG-3'\n______________GAGG__AUGGA__AUGAAC_GC__GCGGCU_GUG___________AGAUGAA_GA_GGCA\n______________||||__||:||__||||||_:|__:||||:_:||___________|||||||_||_::||\n______________CUCC__UAUCU__UACUUG_UG__UGCCGG_UAC___________UCUACUU_CU_UUGU\n3'-GUU...CCCUA____G______G_______A__________U_____________________A__U____UUAUU...GGA-5'\n_____________|____________________________________________________________|\n_____________208__________________________________________________________154\n |
233 -- 239 |
163 -- 169 |
-37.3867 kcal/mol |
12.1272 kcal/mol |
13.9822 kcal/mol |
183 247@LB@ | |@LB@5'-GAA...AGACG AG AA A AA U CUAAUUGUGGA U UCAGU...AAG-3'@LB@ GAGG AUGGA AUGAAC GC GCGGCU GUG AGAUGAA GA GGCA@LB@ |||| ||:|| |||||| :| :||||: :|| ||||||| || ::||@LB@ CUCC UAUCU UACUUG UG UGCCGG UAC UCUACUU CU UUGU@LB@3'-GUU...CCCUA G G A U A U UUAUU...GGA-5'@LB@ | |@LB@ 208 154@LB@@LB@@LB@Energy -19.30 kcal/mol@LB@Hybridization Energy -37.3867 kcal/mol@LB@Unfolding Energy - mRNA 12.1272 kcal/mol@LB@Unfolding Energy - sRNA 13.9822 kcal/mol@LB@@LB@Position - mRNA 184 -- 246@LB@Position - sRNA 155 -- 207@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 163 -- 169@LB@ |
42 |
0.009182 |
0.5883 |
lmo1767 |
purM |
-18.99 |
0.016282 |
211 -- 267 |
155 -- 213 |
phosphoribosylaminoimidazole synthetase |
|
_____________210__________________________________________________________________________268\n_____________|____________________________________________________________________________|\n5'-GGA...ACAAA___AAU___A_AAA_______UA_UAAA_C____________A______________UCA__U_________C___UCAAA...UAG-3'\n______________UCG___GGC_G___AUGCAUA__G____G_AGGCGUGGACGU_GAA__GC_UGGCUA___AG___AGUGGAA_GCA\n______________|||___|||_|___|||||||__|____|_||||:|:|||:|_|||__:|_:|||:|___||___|:||:||_:||\n______________AGC___CCG_C___UACGUAU__C____C_UCCGUAUCUGUA_CUU__UG_GCCGGU___UC___UUACUUU_UGU\n3'-GUU...GUACA___________GGA_______UG_CCUA__________________GA__U______UAC__UAC___________UUAUU...GGA-5'\n_____________|____________________________________________________________________________|\n_____________214__________________________________________________________________________154\n |
257 -- 263 |
158 -- 164 |
-45.9009 kcal/mol |
14.0255 kcal/mol |
22.2914 kcal/mol |
210 268@LB@ | |@LB@5'-GGA...ACAAA AAU A AAA UA UAAA C A UCA U C UCAAA...UAG-3'@LB@ UCG GGC G AUGCAUA G G AGGCGUGGACGU GAA GC UGGCUA AG AGUGGAA GCA@LB@ ||| ||| | ||||||| | | ||||:|:|||:| ||| :| :|||:| || |:||:|| :||@LB@ AGC CCG C UACGUAU C C UCCGUAUCUGUA CUU UG GCCGGU UC UUACUUU UGU@LB@3'-GUU...GUACA GGA UG CCUA GA U UAC UAC UUAUU...GGA-5'@LB@ | |@LB@ 214 154@LB@@LB@@LB@Energy -18.99 kcal/mol@LB@Hybridization Energy -45.9009 kcal/mol@LB@Unfolding Energy - mRNA 14.0255 kcal/mol@LB@Unfolding Energy - sRNA 22.2914 kcal/mol@LB@@LB@Position - mRNA 211 -- 267@LB@Position - sRNA 155 -- 213@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 158 -- 164@LB@ |
73 |
0.0193 |
0.6733 |
lmo0405 |
N/A |
-18.50 |
0.020574 |
154 -- 209 |
155 -- 199 |
phosphate transporter |
|
_____________153____________210\n_____________|______________|\n5'-GUG...UUAUG________U_____UACGA...CGA-3'\n______________AUGACGGG_AUGAG\n______________||:|||||_|||||\n______________UAUUGCCC_UACUC\n3'-GUU...AUACG______________CGUAU...GGA-5'\n_____________|______________|\n_____________200____________154\n |
50 -- 56 |
202 -- 208 |
-16.311 kcal/mol |
2.72131 kcal/mol |
0.386761 kcal/mol |
153 210@LB@ | |@LB@5'-GUG...UUAUG U UACGA...CGA-3'@LB@ AUGACGGG AUGAG@LB@ ||:||||| |||||@LB@ UAUUGCCC UACUC@LB@3'-GUU...AUACG CGUAU...GGA-5'@LB@ | |@LB@ 200 154@LB@@LB@@LB@Energy -18.50 kcal/mol@LB@Hybridization Energy -16.311 kcal/mol@LB@Unfolding Energy - mRNA 2.72131 kcal/mol@LB@Unfolding Energy - sRNA 0.386761 kcal/mol@LB@@LB@Position - mRNA 154 -- 209@LB@Position - sRNA 155 -- 199@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 202 -- 208@LB@ |
115 |
0.03087 |
0.6968 |
lmo0059 |
N/A |
-17.38 |
0.034592 |
142 -- 189 |
155 -- 211 |
|
|
_____________141_______________________________________________190\n_____________|_________________________________________________|\n5'-AAG...UUAGC____G_____UU___U________________UUUU_____A_______GGGAG...CAU-3'\n______________AGGC__GGAU__AUG_GGCUGCGCG__CAAUG____UGAAU_GAAAGCG\n______________||||__:||:__|||_::||:|:||__|||||____|||||_||||:|:\n______________UCCG__UCUG__UAC_UUGAUGUGC__GUUAC____ACUUA_CUUUUGU\n3'-GUU...CCUAC____UA___________________CG_____UCU______________UUAUU...GGA-5'\n_____________|_________________________________________________|\n_____________212_______________________________________________154\n |
183 -- 189 |
155 -- 161 |
-35.3318 kcal/mol |
12.9952 kcal/mol |
13.976 kcal/mol |
141 190@LB@ | |@LB@5'-AAG...UUAGC G UU U UUUU A GGGAG...CAU-3'@LB@ AGGC GGAU AUG GGCUGCGCG CAAUG UGAAU GAAAGCG@LB@ |||| :||: ||| ::||:|:|| ||||| ||||| ||||:|:@LB@ UCCG UCUG UAC UUGAUGUGC GUUAC ACUUA CUUUUGU@LB@3'-GUU...CCUAC UA CG UCU UUAUU...GGA-5'@LB@ | |@LB@ 212 154@LB@@LB@@LB@Energy -17.38 kcal/mol@LB@Hybridization Energy -35.3318 kcal/mol@LB@Unfolding Energy - mRNA 12.9952 kcal/mol@LB@Unfolding Energy - sRNA 13.976 kcal/mol@LB@@LB@Position - mRNA 142 -- 189@LB@Position - sRNA 155 -- 211@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 155 -- 161@LB@ |
122 |
0.03252 |
0.6968 |
lmo0926 |
N/A |
-16.71 |
0.046694 |
198 -- 274 |
155 -- 207 |
TetR family transcriptional regulator |
|
_____________197______________275\n_____________|________________|\n5'-GCU...AACCA_____________G__GCGCC...UCG-3'\n______________AGAUGAGUGAAAA_CA\n______________||||||:||||||_||\n______________UCUACUUACUUUU_GU\n3'-GUU...GUUAC________________UUAUU...GGA-5'\n_____________|________________|\n_____________208______________154\n |
265 -- 271 |
157 -- 163 |
-16.1904 kcal/mol |
1.95479 kcal/mol |
0.920152 kcal/mol |
197 275@LB@ | |@LB@5'-GCU...AACCA G GCGCC...UCG-3'@LB@ AGAUGAGUGAAAA CA@LB@ ||||||:|||||| ||@LB@ UCUACUUACUUUU GU@LB@3'-GUU...GUUAC UUAUU...GGA-5'@LB@ | |@LB@ 208 154@LB@@LB@@LB@Energy -16.71 kcal/mol@LB@Hybridization Energy -16.1904 kcal/mol@LB@Unfolding Energy - mRNA 1.95479 kcal/mol@LB@Unfolding Energy - sRNA 0.920152 kcal/mol@LB@@LB@Position - mRNA 198 -- 274@LB@Position - sRNA 155 -- 207@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 157 -- 163@LB@ |
152 |
0.04001 |
0.7027 |
lmo1203 |
cbiL |
-16.49 |
0.051377 |
174 -- 199 |
155 -- 181 |
cobalt-precorrin-2 C(20)-methyltransferase |
|
_____________173___________________200\n_____________|_____________________|\n5'-ACA...CACUG____A________________CGUGG...CAC-3'\n______________CAAU_GAGA_GGGUGAAAACA\n______________||||_||||_|::||||||||\n______________GUUA_CUCU_CUUACUUUUGU\n3'-GUU...UGCCG_________A___________UUAUU...GGA-5'\n_____________|_____________________|\n_____________182___________________154\n |
193 -- 199 |
155 -- 161 |
-18.5314 kcal/mol |
4.87195 kcal/mol |
0.95817 kcal/mol |
173 200@LB@ | |@LB@5'-ACA...CACUG A CGUGG...CAC-3'@LB@ CAAU GAGA GGGUGAAAACA@LB@ |||| |||| |::||||||||@LB@ GUUA CUCU CUUACUUUUGU@LB@3'-GUU...UGCCG A UUAUU...GGA-5'@LB@ | |@LB@ 182 154@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -18.5314 kcal/mol@LB@Unfolding Energy - mRNA 4.87195 kcal/mol@LB@Unfolding Energy - sRNA 0.95817 kcal/mol@LB@@LB@Position - mRNA 174 -- 199@LB@Position - sRNA 155 -- 181@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 155 -- 161@LB@ |
155 |
0.04112 |
0.7058 |
lmo1165 |
N/A |
-16.89 |
0.043077 |
88 -- 150 |
155 -- 206 |
ethanolamine utilization protein EutE |
|
_____________87_______________________________151\n_____________|________________________________|\n5'-AAG...AAUGG____________G___C_______G_______UCCAC...CAA-3'\n______________GGAUUA_GCGGC_GAU_AG_UGGA_GAAGAUA\n______________|:|:||_:||||_:||_||_||:|_|||:|:|\n______________CUUGAU_UGCCG_UUA_UC_ACUU_CUUUUGU\n3'-GUU...CUGUA______G_____G___C__U____A_______UUAUU...GGA-5'\n_____________|________________________________|\n_____________207______________________________154\n |
144 -- 150 |
155 -- 161 |
-24.1777 kcal/mol |
5.41964 kcal/mol |
9.66922 kcal/mol |
87 151@LB@ | |@LB@5'-AAG...AAUGG G C G UCCAC...CAA-3'@LB@ GGAUUA GCGGC GAU AG UGGA GAAGAUA@LB@ |:|:|| :|||| :|| || ||:| |||:|:|@LB@ CUUGAU UGCCG UUA UC ACUU CUUUUGU@LB@3'-GUU...CUGUA G G C U A UUAUU...GGA-5'@LB@ | |@LB@ 207 154@LB@@LB@@LB@Energy -16.89 kcal/mol@LB@Hybridization Energy -24.1777 kcal/mol@LB@Unfolding Energy - mRNA 5.41964 kcal/mol@LB@Unfolding Energy - sRNA 9.66922 kcal/mol@LB@@LB@Position - mRNA 88 -- 150@LB@Position - sRNA 155 -- 206@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 155 -- 161@LB@ |
167 |
0.04638 |
0.7403 |
lmo1401 |
N/A |
-16.51 |
0.050998 |
149 -- 209 |
155 -- 204 |
|
|
_____________148________210\n_____________|__________|\n5'-AUU...AACAA__________CUAUU...UCA-3'\n______________AAUGAAAAUA\n______________||||||||:|\n______________UUACUUUUGU\n3'-GUU...UCUAC__________UUAUU...GGA-5'\n_____________|__________|\n_____________205________154\n |
203 -- 209 |
155 -- 161 |
-7.61408 kcal/mol |
0.775188 kcal/mol |
0.60613 kcal/mol |
148 210@LB@ | |@LB@5'-AUU...AACAA CUAUU...UCA-3'@LB@ AAUGAAAAUA@LB@ ||||||||:|@LB@ UUACUUUUGU@LB@3'-GUU...UCUAC UUAUU...GGA-5'@LB@ | |@LB@ 205 154@LB@@LB@@LB@Energy -16.51 kcal/mol@LB@Hybridization Energy -7.61408 kcal/mol@LB@Unfolding Energy - mRNA 0.775188 kcal/mol@LB@Unfolding Energy - sRNA 0.60613 kcal/mol@LB@@LB@Position - mRNA 149 -- 209@LB@Position - sRNA 155 -- 204@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 155 -- 161@LB@ |
175 |
0.04975 |
0.7607 |
lmo0194 |
N/A |
-16.29 |
0.056201 |
181 -- 242 |
155 -- 212 |
ABC transporter ATP-binding protein |
|
_____________180________________________243\n_____________|__________________________|\n_______5'-AAGA________AAACGAAAAA________AAUUU...AGC-3'\n______________CAAUGGGA__________AGUGAAGA\n______________|||||:||__________|:||||:|\n______________GUUACUCU__________UUACUUUU\n3'-GUU...UGCCG________AC________________GUUUA...GGA-5'\n_____________|__________________________|\n_____________213________________________154\n |
24 -- 30 |
157 -- 163 |
-10.5893 kcal/mol |
0.67181 kcal/mol |
0.933292 kcal/mol |
180 243@LB@ | |@LB@ 5'-AAGA AAACGAAAAA AAUUU...AGC-3'@LB@ CAAUGGGA AGUGAAGA@LB@ |||||:|| |:||||:|@LB@ GUUACUCU UUACUUUU@LB@3'-GUU...UGCCG AC GUUUA...GGA-5'@LB@ | |@LB@ 213 154@LB@@LB@@LB@Energy -16.29 kcal/mol@LB@Hybridization Energy -10.5893 kcal/mol@LB@Unfolding Energy - mRNA 0.67181 kcal/mol@LB@Unfolding Energy - sRNA 0.933292 kcal/mol@LB@@LB@Position - mRNA 181 -- 242@LB@Position - sRNA 155 -- 212@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 157 -- 163@LB@ |