| 74 |
0.01955 |
0.6733 |
lmo0190 |
ipk |
-17.49 |
0.032930 |
174 -- 210 |
154 -- 192 |
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
|
_____________173_______________________________________211\n_____________|_________________________________________|\n5'-AUA...AAAAG____UU_________GA___________AA___________GCAUU...CAA-3'\n______________AGAU__UGAAC_GCG__GGCCA___AGA__AAUGAAAAUAA\n______________|||:__|||||_:|:__|||||___|||__||||||||:||\n______________UCUG__ACUUG_UGU__CCGGU___UCU__UUACUUUUGUU\n3'-GUU...CCGUA____U______A___G______UAC___AC___________UAUUA...GGA-5'\n_____________|_________________________________________|\n_____________193_______________________________________153\n |
204 -- 210 |
154 -- 160 |
-28.6344 kcal/mol |
5.15958 kcal/mol |
12.1365 kcal/mol |
173 211@LB@ | |@LB@5'-AUA...AAAAG UU GA AA GCAUU...CAA-3'@LB@ AGAU UGAAC GCG GGCCA AGA AAUGAAAAUAA@LB@ |||: ||||| :|: ||||| ||| ||||||||:||@LB@ UCUG ACUUG UGU CCGGU UCU UUACUUUUGUU@LB@3'-GUU...CCGUA U A G UAC AC UAUUA...GGA-5'@LB@ | |@LB@ 193 153@LB@@LB@@LB@Energy -17.49 kcal/mol@LB@Hybridization Energy -28.6344 kcal/mol@LB@Unfolding Energy - mRNA 5.15958 kcal/mol@LB@Unfolding Energy - sRNA 12.1365 kcal/mol@LB@@LB@Position - mRNA 174 -- 210@LB@Position - sRNA 154 -- 192@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 154 -- 160@LB@ |
| 84 |
0.02276 |
0.6733 |
lmo2467 |
N/A |
-18.10 |
0.024762 |
166 -- 213 |
154 -- 198 |
chitin-binding protein |
|
_____________165__________________________________________________214\n_____________|____________________________________________________|\n5'-UCA...CAAAA_____________________UGAAA__AA____CAUC______________CGAAG...AAC-3'\n______________AGGUAUA___AUGAACUAUAC_____GG__GGUG____AUGAA_GAAAAUGA\n______________|||:|||___||||||||:||_____||__::||____|||||_|||||::|\n______________UCCGUAU___UACUUGAUGUG_____CC__UUAC____UACUU_CUUUUGUU\n3'-GUU...CCUAC_______CUG__________________GG____UC_______A________UAUUA...GGA-5'\n_____________|____________________________________________________|\n_____________199__________________________________________________153\n |
206 -- 212 |
155 -- 161 |
-31.7912 kcal/mol |
6.75491 kcal/mol |
13.9801 kcal/mol |
165 214@LB@ | |@LB@5'-UCA...CAAAA UGAAA AA CAUC CGAAG...AAC-3'@LB@ AGGUAUA AUGAACUAUAC GG GGUG AUGAA GAAAAUGA@LB@ |||:||| ||||||||:|| || ::|| ||||| |||||::|@LB@ UCCGUAU UACUUGAUGUG CC UUAC UACUU CUUUUGUU@LB@3'-GUU...CCUAC CUG GG UC A UAUUA...GGA-5'@LB@ | |@LB@ 199 153@LB@@LB@@LB@Energy -18.10 kcal/mol@LB@Hybridization Energy -31.7912 kcal/mol@LB@Unfolding Energy - mRNA 6.75491 kcal/mol@LB@Unfolding Energy - sRNA 13.9801 kcal/mol@LB@@LB@Position - mRNA 166 -- 213@LB@Position - sRNA 154 -- 198@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 155 -- 161@LB@ |
| 112 |
0.029 |
0.6968 |
lmo0191 |
N/A |
-14.99 |
0.097641 |
103 -- 160 |
154 -- 212 |
phospho-beta-glucosidase |
|
_____________102__________161\n_____________|____________|\n5'-UGU...CCAUG____________GAACG...CGC-3'\n______________GAGUGAAGGCGA\n______________||:||||::|:|\n______________CUUACUUUUGUU\n3'-GUU...CUCUA____________UAUUA...GGA-5'\n_____________|____________|\n_____________213__________153\n |
148 -- 154 |
154 -- 160 |
-12.5182 kcal/mol |
1.90916 kcal/mol |
0.857742 kcal/mol |
102 161@LB@ | |@LB@5'-UGU...CCAUG GAACG...CGC-3'@LB@ GAGUGAAGGCGA@LB@ ||:||||::|:|@LB@ CUUACUUUUGUU@LB@3'-GUU...CUCUA UAUUA...GGA-5'@LB@ | |@LB@ 213 153@LB@@LB@@LB@Energy -14.99 kcal/mol@LB@Hybridization Energy -12.5182 kcal/mol@LB@Unfolding Energy - mRNA 1.90916 kcal/mol@LB@Unfolding Energy - sRNA 0.857742 kcal/mol@LB@@LB@Position - mRNA 103 -- 160@LB@Position - sRNA 154 -- 212@LB@Position Seed - mRNA 148 -- 154@LB@Position Seed - sRNA 154 -- 160@LB@ |
| 135 |
0.03605 |
0.6968 |
lmo1003 |
N/A |
-16.96 |
0.041836 |
78 -- 154 |
154 -- 221 |
phosphotransferase system enzyme I |
|
_____________77_______________________________________________________________________________________155\n_____________|________________________________________________________________________________________|\n5'-GUG...CUUAA____AUCA_____________CUCUUG___U___UAA______CU_____UACUAU______U_AA___A_C______AAA_______UUGAA...AAG-3'\n______________AUCA____UGGGCG_UUAUGU______GUA_UGG____AGGCG__GACAU______CUACAC_G__GGU_G_GAUGAA___GAAGCAA\n______________||||____:|||||_:||||:______:||_:||____||||:__|||||______||||||_|__::|_|_||||||___:||:|||\n______________UAGU____GCCCGC_GAUACG______UAU_GCC____UCCGU__CUGUA______GAUGUG_C__UUA_C_CUACUU___UUUUGUU\n3'-GUU...AACGG____ACAA______G_______________U___CUAC_____AU_____CUU_________C_GG_____U______AC________UAUUA...GGA-5'\n_____________|________________________________________________________________________________________|\n_____________222______________________________________________________________________________________153\n |
148 -- 154 |
154 -- 160 |
-50.8348 kcal/mol |
18.1196 kcal/mol |
22.592 kcal/mol |
77 155@LB@ | |@LB@5'-GUG...CUUAA AUCA CUCUUG U UAA CU UACUAU U AA A C AAA UUGAA...AAG-3'@LB@ AUCA UGGGCG UUAUGU GUA UGG AGGCG GACAU CUACAC G GGU G GAUGAA GAAGCAA@LB@ |||| :||||| :||||: :|| :|| ||||: ||||| |||||| | ::| | |||||| :||:|||@LB@ UAGU GCCCGC GAUACG UAU GCC UCCGU CUGUA GAUGUG C UUA C CUACUU UUUUGUU@LB@3'-GUU...AACGG ACAA G U CUAC AU CUU C GG U AC UAUUA...GGA-5'@LB@ | |@LB@ 222 153@LB@@LB@@LB@Energy -16.96 kcal/mol@LB@Hybridization Energy -50.8348 kcal/mol@LB@Unfolding Energy - mRNA 18.1196 kcal/mol@LB@Unfolding Energy - sRNA 22.592 kcal/mol@LB@@LB@Position - mRNA 78 -- 154@LB@Position - sRNA 154 -- 221@LB@Position Seed - mRNA 148 -- 154@LB@Position Seed - sRNA 154 -- 160@LB@ |
| 147 |
0.03815 |
0.6968 |
lmo0655 |
N/A |
-15.78 |
0.070044 |
227 -- 290 |
154 -- 212 |
phosphoprotein phosphatase |
|
_____________226_____________291\n_____________|_______________|\n______5'-AACAA______UU_______CCACA...UUG-3'\n______________GAGA_G__UGAAGAC\n______________||||_|__||||:||\n______________CUCU_C__ACUUUUG\n3'-GUU...GGUUA____A_UU_______UUUAU...GGA-5'\n_____________|_______________|\n_____________213_____________153\n |
13 -- 19 |
156 -- 162 |
-12.8457 kcal/mol |
3.32795 kcal/mol |
0.916023 kcal/mol |
226 291@LB@ | |@LB@ 5'-AACAA UU CCACA...UUG-3'@LB@ GAGA G UGAAGAC@LB@ |||| | ||||:||@LB@ CUCU C ACUUUUG@LB@3'-GUU...GGUUA A UU UUUAU...GGA-5'@LB@ | |@LB@ 213 153@LB@@LB@@LB@Energy -15.78 kcal/mol@LB@Hybridization Energy -12.8457 kcal/mol@LB@Unfolding Energy - mRNA 3.32795 kcal/mol@LB@Unfolding Energy - sRNA 0.916023 kcal/mol@LB@@LB@Position - mRNA 227 -- 290@LB@Position - sRNA 154 -- 212@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 156 -- 162@LB@ |
| 171 |
0.04778 |
0.7516 |
lmo0498 |
N/A |
-14.78 |
0.106331 |
152 -- 199 |
154 -- 211 |
5-phosphate isomerase |
|
_____________151__________________200\n_____________|____________________|\n5'-AUC...AUCAA_______AA___________ACAUG...GUU-3'\n______________GGUGAGA__GGA_GAGGAUA\n______________::|||||__|:|_||::|:|\n______________UUACUCU__CUU_CUUUUGU\n3'-GUU...GCCGG_______A____A_______UUAUU...GGA-5'\n_____________|____________________|\n_____________212__________________153\n |
192 -- 198 |
155 -- 161 |
-12.5427 kcal/mol |
2.39386 kcal/mol |
0.954976 kcal/mol |
151 200@LB@ | |@LB@5'-AUC...AUCAA AA ACAUG...GUU-3'@LB@ GGUGAGA GGA GAGGAUA@LB@ ::||||| |:| ||::|:|@LB@ UUACUCU CUU CUUUUGU@LB@3'-GUU...GCCGG A A UUAUU...GGA-5'@LB@ | |@LB@ 212 153@LB@@LB@@LB@Energy -14.78 kcal/mol@LB@Hybridization Energy -12.5427 kcal/mol@LB@Unfolding Energy - mRNA 2.39386 kcal/mol@LB@Unfolding Energy - sRNA 0.954976 kcal/mol@LB@@LB@Position - mRNA 152 -- 199@LB@Position - sRNA 154 -- 211@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 155 -- 161@LB@ |
| 181 |
0.05165 |
0.7607 |
lmo2287 |
N/A |
-16.24 |
0.057456 |
190 -- 241 |
154 -- 199 |
tape-measure |
|
_____________189________________________________________________242\n_____________|__________________________________________________|\n5'-UGA...CUGAA________AUAA___AAAA______AG__G_GAACAU_____C_______CAGUA...CAA-3'\n______________AAACAGAU____GUU____GAUUAG__GU_A________GAG_GAUGGAU\n______________||||||||____||:____||:|||__|:_|________||:_|||||||\n______________UUUGUCUA____CAG____CUGAUC__CG_U________CUU_CUACCUA\n3'-GUU...ACAGA_______________A_________AA__G_AAGAUAAC___________UGUGG...GGA-5'\n_____________|__________________________________________________|\n_____________200________________________________________________153\n |
207 -- 213 |
94 -- 100 |
-23.404 kcal/mol |
6.71689 kcal/mol |
9.49359 kcal/mol |
189 242@LB@ | |@LB@5'-UGA...CUGAA AUAA AAAA AG G GAACAU C CAGUA...CAA-3'@LB@ AAACAGAU GUU GAUUAG GU A GAG GAUGGAU@LB@ |||||||| ||: ||:||| |: | ||: |||||||@LB@ UUUGUCUA CAG CUGAUC CG U CUU CUACCUA@LB@3'-GUU...ACAGA A AA G AAGAUAAC UGUGG...GGA-5'@LB@ | |@LB@ 200 153@LB@@LB@@LB@Energy -16.24 kcal/mol@LB@Hybridization Energy -23.404 kcal/mol@LB@Unfolding Energy - mRNA 6.71689 kcal/mol@LB@Unfolding Energy - sRNA 9.49359 kcal/mol@LB@@LB@Position - mRNA 190 -- 241@LB@Position - sRNA 154 -- 199@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 94 -- 100@LB@ |
| 15 |
0.003165 |
0.4469 |
lmo0292 |
N/A |
-21.41 |
0.004857 |
182 -- 249 |
155 -- 212 |
heat-shock protein htrA serine protease |
|
_____________181_____________________________________________________________250\n_____________|_______________________________________________________________|\n5'-GAG...GCAGA____AAGGA__________G_G_AAGAAAAGAAUUUA_____AAACAGC______________CGCCG...AAC-3'\n______________GAGG_____AGACAUGGAC_A_A______________AAUGA_______GA_GAAUGAAAGCA\n______________||||_____|||||||:||_|_|______________|||||_______||_||||||||:||\n______________CUCC_____UCUGUACUUG_U_U______________UUACU_______CU_CUUACUUUUGU\n3'-GUU...CCCUA____GUA____________A_G_GCCGG_______________________A___________UUAUU...GGA-5'\n_____________|_______________________________________________________________|\n_____________213_____________________________________________________________154\n |
243 -- 249 |
155 -- 161 |
-30.3296 kcal/mol |
4.19045 kcal/mol |
13.9822 kcal/mol |
181 250@LB@ | |@LB@5'-GAG...GCAGA AAGGA G G AAGAAAAGAAUUUA AAACAGC CGCCG...AAC-3'@LB@ GAGG AGACAUGGAC A A AAUGA GA GAAUGAAAGCA@LB@ |||| |||||||:|| | | ||||| || ||||||||:||@LB@ CUCC UCUGUACUUG U U UUACU CU CUUACUUUUGU@LB@3'-GUU...CCCUA GUA A G GCCGG A UUAUU...GGA-5'@LB@ | |@LB@ 213 154@LB@@LB@@LB@Energy -21.41 kcal/mol@LB@Hybridization Energy -30.3296 kcal/mol@LB@Unfolding Energy - mRNA 4.19045 kcal/mol@LB@Unfolding Energy - sRNA 13.9822 kcal/mol@LB@@LB@Position - mRNA 182 -- 249@LB@Position - sRNA 155 -- 212@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 155 -- 161@LB@ |
| 17 |
0.003248 |
0.4469 |
lmo1161 |
N/A |
-22.54 |
0.002685 |
189 -- 238 |
155 -- 204 |
ethanolamine utilization protein EutJ |
|
_____________188___________________________________________________239\n_____________|_____________________________________________________|\n5'-GGU...GUAAG_____GGAAAA________U_______AACA________AC____________GCUUG...AAG-3'\n______________GAGGU______AUGGAUAU___UUACA____GCCAAUGA___GAAUGGAA_CA\n______________||||:______||:||:||___:||||____||||||||___|||||:||_||\n______________CUCCG______UAUCUGUA___GAUGU____CGGUUACU___CUUACUUU_GU\n3'-GUU...CCCUA___________________CUU_____GC__________CUA________U__UUAUU...GGA-5'\n_____________|_____________________________________________________|\n_____________205___________________________________________________154\n |
230 -- 236 |
158 -- 164 |
-34.4634 kcal/mol |
5.85583 kcal/mol |
13.9822 kcal/mol |
188 239@LB@ | |@LB@5'-GGU...GUAAG GGAAAA U AACA AC GCUUG...AAG-3'@LB@ GAGGU AUGGAUAU UUACA GCCAAUGA GAAUGGAA CA@LB@ ||||: ||:||:|| :|||| |||||||| |||||:|| ||@LB@ CUCCG UAUCUGUA GAUGU CGGUUACU CUUACUUU GU@LB@3'-GUU...CCCUA CUU GC CUA U UUAUU...GGA-5'@LB@ | |@LB@ 205 154@LB@@LB@@LB@Energy -22.54 kcal/mol@LB@Hybridization Energy -34.4634 kcal/mol@LB@Unfolding Energy - mRNA 5.85583 kcal/mol@LB@Unfolding Energy - sRNA 13.9822 kcal/mol@LB@@LB@Position - mRNA 189 -- 238@LB@Position - sRNA 155 -- 204@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 158 -- 164@LB@ |
| 22 |
0.003708 |
0.4469 |
lmo1689 |
N/A |
-20.94 |
0.006216 |
185 -- 218 |
155 -- 186 |
A/G-specific adenine glycosylase |
|
_____________184________________________________219\n_____________|__________________________________|\n5'-UGA...UAUUA________A__GGAA_______AA________G_CUAAC...CGU-3'\n______________GAAUUACG_GG____AAUGAGA__AAUGAAGA_A\n______________|||:|||:_||____|||||||__||||||:|_|\n______________CUUGAUGU_CC____UUACUCU__UUACUUUU_U\n3'-GUU...CUGUA________G__GG_________AC________G_UUAUU...GGA-5'\n_____________|__________________________________|\n_____________187________________________________154\n |
210 -- 216 |
157 -- 163 |
-27.9128 kcal/mol |
3.65812 kcal/mol |
9.66922 kcal/mol |
184 219@LB@ | |@LB@5'-UGA...UAUUA A GGAA AA G CUAAC...CGU-3'@LB@ GAAUUACG GG AAUGAGA AAUGAAGA A@LB@ |||:|||: || ||||||| ||||||:| |@LB@ CUUGAUGU CC UUACUCU UUACUUUU U@LB@3'-GUU...CUGUA G GG AC G UUAUU...GGA-5'@LB@ | |@LB@ 187 154@LB@@LB@@LB@Energy -20.94 kcal/mol@LB@Hybridization Energy -27.9128 kcal/mol@LB@Unfolding Energy - mRNA 3.65812 kcal/mol@LB@Unfolding Energy - sRNA 9.66922 kcal/mol@LB@@LB@Position - mRNA 185 -- 218@LB@Position - sRNA 155 -- 186@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 157 -- 163@LB@ |
