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CopraRNA 8257533

Input and runtime details for job 8257533 (precomputed example)

Sequence input

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100

CopraRNA parameters

? Consensus prediction off
? p-value combinationno
? p-value filtering (0=off)0

IntaRNA parameters

? Target folding window size150
? Target max. basepair distance100

Job ID 8257533 (server version trunk)

?Job Submitted & Queued@ Fri Feb 16 15:34:31 CET 2018
?CopraRNA Started@ Fri Feb 16 15:34:56 CET 2018
?CopraRNA Finished & Post-Processing@ Fri Feb 16 22:30:38 CET 2018
?Post-Processing Finished@ Fri Feb 16 22:30:45 CET 2018
?Job Completed@ Fri Feb 16 22:31:01 CET 2018
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=8257533&toolName=CopraRNA ( 30 days expiry )

Description of the job

LhrA2

Output download complete results [zip]

Downloadable files

[csv]
[txt]
[csv]
[png] [pdf] [ps]
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[html] [pdf]
[png] [pdf]
[txt] [svg]


heatmap

? Conserved, identified interactions for NC_003210 Listeria monocytogenes EGD-e

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs
95 0.02474 0.6733 lmo2446 N/A -18.44 0.021161 178 -- 278 95 -- 188 glycosidase  
103 0.02634 0.6733 lmo2183 N/A -17.72 0.029644 120 -- 189 95 -- 172 ferrichrome ABC transporter permease  
120 0.03214 0.6968 lmo0368 N/A -17.05 0.040150 163 -- 213 95 -- 164    
166 0.04633 0.7403 lmo1152 N/A -16.33 0.055198 97 -- 188 95 -- 169 PduB protein  
184 0.05355 0.7607 lmo2119 N/A -15.99 0.064071 3 -- 81 95 -- 171    
193 0.05586 0.7607 lmo1772 purC -15.19 0.089756 256 -- 291 97 -- 135 phosphoribosylaminoimidazole-succinocarboxamide synthase  
170 0.04745 0.7511 lmo2203 N/A -15.31 0.085499 133 -- 190 99 -- 165 N-acetylmuramoyl-L-alanine amidase  
53 0.0118 0.599 lmo2394 N/A -15.56 0.076801 20 -- 80 100 -- 170    
99 0.02562 0.6733 lmo2201 N/A -18.35 0.022079 190 -- 255 101 -- 170 3-oxoacyl-ACP synthase  
109 0.02745 0.6733 lmo0843 N/A -19.30 0.014041 79 -- 127 106 -- 151    
52 0.01176 0.599 lmo0302 N/A -19.32 0.013869 143 -- 287 107 -- 220 lmo0302  
160 0.04276 0.7192 lmo0415 N/A -19.07 0.015641 183 -- 241 108 -- 171 endo-1 4-beta-xylanase  
1 1.731e-05 0.04657 lmo1883 N/A -26.54 0.000269 199 -- 265 114 -- 169 chitinase  
130 0.03486 0.6968 lmo1231 N/A -15.49 0.079293 19 -- 84 118 -- 185 DNA polymerase beta  
28 0.005366 0.5157 lmo2793 N/A -19.39 0.013418 199 -- 253 121 -- 174 lmo2793  
124 0.03258 0.6968 lmo1611 N/A -17.32 0.035574 130 -- 182 121 -- 173 aminopeptidase  
139 0.03644 0.6968 lmo2566 N/A -16.54 0.050390 198 -- 240 121 -- 170 lmo2566  
186 0.05422 0.7607 lmo2356 N/A -15.92 0.066009 162 -- 205 129 -- 170 lmo2356  
116 0.03152 0.6968 lmo1963 N/A -17.16 0.038227 218 -- 258 130 -- 166    
128 0.03459 0.6968 lmo1993 pdp -15.44 0.080912 179 -- 212 139 -- 174 pyrimidine-nucleoside phosphorylase  
50 0.01167 0.599 lmo0850 N/A -18.65 0.019190 166 -- 190 141 -- 165    
92 0.02404 0.6733 lmo1947 resE -16.63 0.048416 181 -- 212 141 -- 170 two-component sensor histidine kinas  
165 0.04532 0.7392 lmo2091 argH -16.36 0.054421 189 -- 262 141 -- 199 argininosuccinate lyase  
198 0.05669 0.7607 lmo2670 N/A -16.54 0.050282 118 -- 190 141 -- 216    
54 0.01218 0.6043 lmo0065 N/A -17.22 0.037093 77 -- 100 146 -- 171 lmo0065  
60 0.01449 0.6412 lmo0835 N/A -17.67 0.030280 187 -- 229 146 -- 187 peptidoglycan binding protein  
80 0.02141 0.6733 lmo1147 N/A -19.90 0.010431 143 -- 214 146 -- 207 cobalamin biosynthesis protein CopB  
91 0.02389 0.6733 lmo2425 N/A -16.15 0.059838 240 -- 263 146 -- 170 glycine cleavage system protein H  
126 0.03359 0.6968 lmo1599 ccpA -16.59 0.049230 178 -- 221 146 -- 188 catabolite control protein A  
38 0.007855 0.5562 lmo1229 N/A -18.27 0.022927 193 -- 228 147 -- 186    
56 0.01257 0.6043 lmo2205 N/A -16.72 0.046467 190 -- 249 147 -- 203 phosphoglyceromutase  
72 0.01905 0.6733 lmo2074 N/A -18.09 0.024896 131 -- 158 147 -- 174    
89 0.02343 0.6733 lmo1651 N/A -15.38 0.082912 189 -- 217 147 -- 170 ABC transporter ATP-binding protein  
100 0.02596 0.6733 lmo2805 N/A -13.33 0.188364 273 -- 298 147 -- 172 hypothetical secreted protein  
132 0.03532 0.6968 lmo1773 purB -14.78 0.106383 9 -- 45 147 -- 186 adenylosuccinate lyase  
140 0.0365 0.6968 lmo1717 N/A -17.46 0.033387 195 -- 217 147 -- 170    
145 0.03765 0.6968 lmo0134 N/A -12.36 0.267504 193 -- 220 147 -- 170    
172 0.04804 0.7516 lmo0111 N/A -17.34 0.035270 180 -- 204 147 -- 170 lmo0111  
185 0.05367 0.7607 lmo1631 trpD -14.92 0.100424 142 -- 163 148 -- 170 anthranilate phosphoribosyltransferase  
64 0.01603 0.6733 lmo0131 N/A -19.25 0.014339 193 -- 248 149 -- 204    
44 0.01013 0.599 lmo0022 N/A -16.20 0.058356 176 -- 261 150 -- 213 PTS fructose transporter subunit IIB  
57 0.01283 0.6057 lmo2379 N/A -18.13 0.024463 194 -- 217 150 -- 173 monovalent cation/H+ antiporter subunit B  
75 0.01961 0.6733 lmo0383 N/A -20.23 0.008871 224 -- 265 150 -- 186 methylmalonate-semialdehyde dehydrogenase  
110 0.02752 0.6733 lmo0057 N/A -17.32 0.035592 178 -- 213 150 -- 185    
158 0.04144 0.7058 lmo1958 fhuB -14.94 0.099691 191 -- 222 150 -- 181 ferrichrome ABC transporter permease  
168 0.04649 0.7403 lmo1875 N/A -18.37 0.021889 174 -- 204 150 -- 181 ABC transporter ATP-binding protein  
195 0.0561 0.7607 lmo2779 N/A -14.82 0.104550 1 -- 44 150 -- 181 GTP-binding protein EngD  
37 0.007696 0.5562 lmo0551 N/A -17.72 0.029617 133 -- 210 151 -- 204 lmo0551  
83 0.02274 0.6733 lmo1752 N/A -17.06 0.039898 184 -- 210 151 -- 173 lmo1752  
134 0.0358 0.6968 lmo2682 kdpA -15.50 0.078936 69 -- 121 151 -- 202 potassium-transporting ATPase subunit A  
142 0.03693 0.6968 lmo2586 N/A -16.96 0.041696 196 -- 266 151 -- 227 formate dehydrogenase subunit alpha  
156 0.04133 0.7058 lmo1481 holA -16.45 0.052293 189 -- 224 151 -- 199 DNA polymerase III subunit delta  
176 0.04979 0.7607 lmo1340 N/A -16.63 0.048446 193 -- 216 151 -- 177    
183 0.0534 0.7607 lmo2583 N/A -16.44 0.052604 178 -- 212 151 -- 181 DNA-binding response regulator  
200 0.05675 0.7607 lmo0115 lmaD -15.21 0.089253 167 -- 203 151 -- 184    
55 0.01256 0.6043 lmo1725 N/A -17.74 0.029271 269 -- 300 152 -- 185 GntR family tramscriptional regulator  
111 0.02805 0.6801 lmo2841 N/A -15.50 0.078879 184 -- 209 152 -- 178 sucrose phosphorylase  
125 0.03321 0.6968 lmo2357 N/A -16.59 0.049158 2 -- 27 152 -- 176    
179 0.05074 0.7607 lmo1598 tyrS -15.93 0.065557 245 -- 292 152 -- 211 tyrosyl-tRNA synthetase  
14 0.00304 0.4469 lmo1187 N/A -19.26 0.014311 139 -- 172 153 -- 183 ethanolamine utilization protein EutQ  
51 0.01168 0.599 lmo0105 N/A -17.88 0.027496 155 -- 205 153 -- 201 chitinase B  
61 0.01458 0.6412 lmo2589 N/A -18.59 0.019740 180 -- 258 153 -- 210 TetR family transcriptional regulator  
67 0.01689 0.6733 lmo0335 N/A -16.81 0.044620 154 -- 214 153 -- 220 lmo0335  
114 0.02972 0.6968 lmo2166 N/A -15.48 0.079589 75 -- 119 153 -- 198 lmo2166  
119 0.03213 0.6968 lmo2454 N/A -17.21 0.037384 166 -- 217 153 -- 209 lmo2454  
121 0.03234 0.6968 lmo0198 glmU -15.85 0.067914 228 -- 259 153 -- 184 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase  
123 0.03258 0.6968 lmo1821 N/A -14.83 0.104144 189 -- 278 153 -- 220 phosphoprotein phosphatase  
137 0.03627 0.6968 lmo2666 N/A -15.01 0.096662 42 -- 111 153 -- 211 PTS galacticol transporter subunit IIB  
146 0.03799 0.6968 lmo1526 N/A -15.66 0.073786 160 -- 215 153 -- 207    
159 0.04218 0.7139 lmo1454 rpoD -16.27 0.056776 172 -- 217 153 -- 211 RNA polymerase sigma factor RpoD  
164 0.04503 0.7389 lmo2361 N/A -17.31 0.035661 175 -- 215 153 -- 209    
5 0.001245 0.4469 lmo1835 carB -22.95 0.002153 176 -- 228 154 -- 207 carbamoyl-phosphate synthetase  
6 0.001395 0.4469 lmo2078 N/A -19.77 0.011149 188 -- 240 154 -- 207    
11 0.002745 0.4469 lmo0197 N/A -21.05 0.005861 175 -- 258 154 -- 211 regulatory protein SpoVG  
12 0.002933 0.4469 lmo1952 lysA -19.68 0.011630 182 -- 245 154 -- 213 diaminopimelate decarboxylase  
21 0.003699 0.4469 lmo2681 kdpB -18.50 0.020601 185 -- 204 154 -- 173 potassium-transporting ATPase subunit B  
30 0.00607 0.5445 lmo0619 N/A -20.15 0.009257 186 -- 283 154 -- 223 lmo0619  
31 0.00657 0.5515 lmo1828 N/A -18.66 0.019040 211 -- 279 154 -- 211    
33 0.006763 0.5515 lmo1941 N/A -21.42 0.004845 223 -- 286 154 -- 207    
62 0.01477 0.6412 lmo1163 N/A -15.96 0.064740 175 -- 219 154 -- 212 carbon dioxide concentrating mechanism protein  
74 0.01955 0.6733 lmo0190 ipk -17.49 0.032930 174 -- 210 154 -- 192 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase  
84 0.02276 0.6733 lmo2467 N/A -18.10 0.024762 166 -- 213 154 -- 198 chitin-binding protein  
112 0.029 0.6968 lmo0191 N/A -14.99 0.097641 103 -- 160 154 -- 212 phospho-beta-glucosidase  
135 0.03605 0.6968 lmo1003 N/A -16.96 0.041836 78 -- 154 154 -- 221 phosphotransferase system enzyme I  
147 0.03815 0.6968 lmo0655 N/A -15.78 0.070044 227 -- 290 154 -- 212 phosphoprotein phosphatase  
171 0.04778 0.7516 lmo0498 N/A -14.78 0.106331 152 -- 199 154 -- 211 5-phosphate isomerase  
181 0.05165 0.7607 lmo2287 N/A -16.24 0.057456 190 -- 241 154 -- 199 tape-measure  
15 0.003165 0.4469 lmo0292 N/A -21.41 0.004857 182 -- 249 155 -- 212 heat-shock protein htrA serine protease  
17 0.003248 0.4469 lmo1161 N/A -22.54 0.002685 189 -- 238 155 -- 204 ethanolamine utilization protein EutJ  
22 0.003708 0.4469 lmo1689 N/A -20.94 0.006216 185 -- 218 155 -- 186 A/G-specific adenine glycosylase  
24 0.004153 0.4656 lmo1386 N/A -22.14 0.003328 2 -- 37 155 -- 186 DNA translocase  
34 0.007076 0.552 lmo2678 N/A -19.30 0.013995 184 -- 246 155 -- 207 XRE family transcriptional regulator  
42 0.009182 0.5883 lmo1767 purM -18.99 0.016282 211 -- 267 155 -- 213 phosphoribosylaminoimidazole synthetase  
73 0.0193 0.6733 lmo0405 N/A -18.50 0.020574 154 -- 209 155 -- 199 phosphate transporter  
115 0.03087 0.6968 lmo0059 N/A -17.38 0.034592 142 -- 189 155 -- 211    
122 0.03252 0.6968 lmo0926 N/A -16.71 0.046694 198 -- 274 155 -- 207 TetR family transcriptional regulator  
152 0.04001 0.7027 lmo1203 cbiL -16.49 0.051377 174 -- 199 155 -- 181 cobalt-precorrin-2 C(20)-methyltransferase  
155 0.04112 0.7058 lmo1165 N/A -16.89 0.043077 88 -- 150 155 -- 206 ethanolamine utilization protein EutE  
167 0.04638 0.7403 lmo1401 N/A -16.51 0.050998 149 -- 209 155 -- 204    
175 0.04975 0.7607 lmo0194 N/A -16.29 0.056201 181 -- 242 155 -- 212 ABC transporter ATP-binding protein  
189 0.05497 0.7607 lmo1156 N/A -15.46 0.080118 37 -- 70 155 -- 186 diol dehydratase-reactivating factor large subunit  
3 0.0004111 0.3688 lmo0196 N/A -23.83 0.001321 198 -- 256 156 -- 209 regulatory protein SpoVG  
9 0.002066 0.4469 lmo0669 N/A -20.91 0.006284 33 -- 77 156 -- 211 oxidoreductase  
13 0.002947 0.4469 lmo0233 N/A -20.88 0.006381 238 -- 276 156 -- 198 DNA repair protein RadA  
20 0.003655 0.4469 lmo1591 argC -21.66 0.004270 183 -- 240 156 -- 208 N-acetyl-gamma-glutamyl-phosphate reductase  
26 0.004866 0.5029 lmo0682 flgG -18.63 0.019297 177 -- 239 156 -- 207 flagellar basal body rod protein FlgG  
40 0.00848 0.5705 lmo2399 N/A -21.52 0.004592 127 -- 195 156 -- 207    
46 0.01036 0.599 lmo2695 N/A -19.87 0.010617 150 -- 211 156 -- 209 dihydroxyacetone kinase subunit DhaK  
58 0.0137 0.6248 lmo1724 N/A -17.96 0.026530 144 -- 212 156 -- 211 ABC transporter ATP-binding protein  
88 0.02298 0.6733 lmo0666 N/A -13.39 0.184164 127 -- 173 156 -- 211    
107 0.02737 0.6733 lmo1575 N/A -17.23 0.037041 80 -- 118 156 -- 205    
117 0.03157 0.6968 lmo0079 N/A -15.68 0.073126 244 -- 277 156 -- 185 lmo0079  
118 0.03209 0.6968 lmo0654 N/A -17.15 0.038336 200 -- 225 156 -- 180 lmo0654  
143 0.03726 0.6968 lmo2701 N/A -17.97 0.026314 78 -- 126 156 -- 198    
148 0.03863 0.6968 lmo1766 purN -15.06 0.094934 1 -- 35 156 -- 188 phosphoribosylglycinamide formyltransferase  
149 0.0387 0.6968 lmo1809 plsX -16.53 0.050633 188 -- 233 156 -- 203 glycerol-3-phosphate acyltransferase PlsX  
161 0.04429 0.7375 lmo0588 N/A -15.80 0.069486 3 -- 42 156 -- 202 DNA photolyase  
191 0.0551 0.7607 lmo2853 N/A -14.70 0.110014 201 -- 241 156 -- 201    
2 0.0002774 0.3688 lmo1666 N/A -21.94 0.003684 151 -- 207 157 -- 207 peptidoglycan-linked protein lmo0333
7 0.001816 0.4469 lmo1666 N/A -21.94 0.003684 151 -- 207 157 -- 207 peptidoglycan-linked protein lmo0333
8 0.001816 0.4469 lmo1666 N/A -21.94 0.003684 151 -- 207 157 -- 207 peptidoglycan-linked protein lmo0333
23 0.00382 0.4469 lmo1572 accA -20.61 0.007329 192 -- 226 157 -- 188 acetyl-CoA carboxylase carboxyltransferase subunit alpha  
41 0.008795 0.5772 lmo1984 ilvB -19.06 0.015768 187 -- 229 157 -- 201 acetolactate synthase  
45 0.0103 0.599 lmo0066 N/A -17.00 0.040990 179 -- 207 157 -- 199 toxin  
48 0.01096 0.599 lmo0184 N/A -18.00 0.026009 159 -- 211 157 -- 203 oligo-1 6-glucosidase  
49 0.01139 0.599 lmo0181 N/A -18.25 0.023109 147 -- 168 157 -- 179 sugar ABC transporter substrate-binding protein  
77 0.02006 0.6733 lmo1400 N/A -17.16 0.038248 136 -- 215 157 -- 223 N-acetyltransferase  
98 0.02549 0.6733 lmo2155 N/A -16.07 0.061955 240 -- 298 157 -- 207 ribonucleotide-diphosphate reductase subunit alpha  
104 0.02699 0.6733 lmo1327 rbfA -16.36 0.054483 188 -- 240 157 -- 199 ribosome-binding factor A  
138 0.03642 0.6968 lmo0509 prs -15.18 0.090372 180 -- 241 157 -- 211 phosphoribosyl pyrophosphate synthetase  
154 0.04021 0.7027 lmo2008 N/A -17.88 0.027453 195 -- 258 157 -- 220 ABC transporter permease  
174 0.04903 0.7583 lmo1615 trmB -12.39 0.264018 169 -- 243 157 -- 213 tRNA (guanine-N(7)-)-methyltransferase  
180 0.05132 0.7607 lmo1643 N/A -15.34 0.084306 231 -- 286 157 -- 207 lmo1643  
47 0.01063 0.599 lmo0138 N/A -20.04 0.009767 146 -- 210 158 -- 213 lmo0138  
70 0.01838 0.6733 lmo0265 N/A -16.33 0.055331 156 -- 199 158 -- 207 succinyl-diaminopimelate desuccinylase  
78 0.02097 0.6733 lmo1196 N/A -18.80 0.017871 157 -- 213 158 -- 203 cobalt-precorrin-6Y C(15)-methyltransferase  
93 0.02416 0.6733 lmo2042 N/A -17.13 0.038629 149 -- 196 158 -- 206 cell division protein MraZ  
151 0.03914 0.6976 lmo1466 N/A -16.64 0.048271 185 -- 226 158 -- 202    
182 0.05242 0.7607 lmo2028 N/A -14.74 0.108099 169 -- 210 158 -- 185    
10 0.002311 0.4469 lmo2106 N/A -20.89 0.006356 172 -- 222 159 -- 207    
113 0.02939 0.6968 lmo0232 clpC -17.21 0.037249 171 -- 212 159 -- 202 endopeptidase Clp ATP-binding chain C  
35 0.00718 0.552 lmo0397 N/A -24.49 0.000911 178 -- 232 160 -- 211    
71 0.01891 0.6733 lmo2349 N/A -17.22 0.037183 66 -- 119 160 -- 206 amino acid ABC transporter substrate-binding protein  
90 0.02372 0.6733 lmo2712 N/A -17.76 0.029098 218 -- 285 160 -- 210 gluconate kinase  
105 0.02711 0.6733 lmo0347 N/A -16.41 0.053410 62 -- 87 160 -- 186 dihydroxyacetone kinase  
163 0.04467 0.7375 lmo1286 parE -16.49 0.051436 172 -- 223 160 -- 211 DNA topoisomerase IV subunit B  
177 0.05015 0.7607 lmo1905 cca -16.43 0.052746 154 -- 208 160 -- 211 tRNA CCA-pyrophosphorylase  
194 0.05602 0.7607 lmo1602 N/A -15.08 0.094256 153 -- 204 160 -- 207    
69 0.01791 0.6733 lmo0011 N/A -18.87 0.017267 48 -- 93 161 -- 209 mevalonate diphosphate decarboxylase  
101 0.026 0.6733 lmo2768 N/A -17.52 0.032492 230 -- 251 161 -- 179 hypothetical membrane protein  
82 0.02188 0.6733 lmo0200 prfA -17.77 0.028863 191 -- 222 162 -- 204 listeriolysin positive regulatory protein  
79 0.02126 0.6733 lmo1172 N/A -17.83 0.028138 200 -- 242 163 -- 210 two-component response regulator  
86 0.02293 0.6733 lmo0853 N/A -17.72 0.029549 77 -- 124 163 -- 214 SugE protein  
150 0.03884 0.6968 lmo1709 N/A -16.64 0.048121 221 -- 241 163 -- 181 methionine aminopeptidase  
196 0.05638 0.7607 lmo2015 N/A -14.78 0.106466 232 -- 254 163 -- 185 alpha-mannosidase  
97 0.02539 0.6733 lmo2585 N/A -13.14 0.201793 84 -- 125 164 -- 211    
85 0.0229 0.6733 lmo1788 N/A -18.82 0.017630 177 -- 227 165 -- 211 transcriptional regulator  
27 0.005046 0.5029 lmo2370 N/A -21.11 0.005698 252 -- 287 166 -- 205 aminotransferase  
81 0.02179 0.6733 lmo0087 N/A -17.84 0.027970 185 -- 226 166 -- 207 lmo0087  
94 0.02439 0.6733 lmo0952 N/A -17.21 0.037353 188 -- 223 166 -- 199 lmo0952  
178 0.05066 0.7607 lmo0216 N/A -18.27 0.022949 55 -- 114 166 -- 213    
19 0.003536 0.4469 lmo0321 N/A -22.74 0.002408 114 -- 157 167 -- 207    
39 0.008114 0.5599 lmo0390 N/A -15.77 0.070471 151 -- 193 167 -- 211 uracil-DNA glycosylase  
106 0.02722 0.6733 lmo1616 N/A -15.61 0.075454 67 -- 108 167 -- 211    
157 0.0414 0.7058 lmo0010 N/A -15.41 0.081879 188 -- 219 167 -- 203 mevalonate kinase  
29 0.005638 0.5232 lmo0014 qoxB -19.61 0.012062 164 -- 215 168 -- 211 AA3-600 quinol oxidase subunit I  
59 0.0137 0.6248 lmo0642 N/A -14.84 0.103863 179 -- 256 168 -- 213 lmo0642  
187 0.05427 0.7607 lmo2654 fus -15.17 0.090605 196 -- 212 168 -- 184 elongation factor G  
16 0.003215 0.4469 lmo1403 mutS -20.74 0.006867 183 -- 222 169 -- 209 DNA mismatch repair protein MutS  
25 0.004689 0.5029 lmo1584 N/A -20.33 0.008463 183 -- 211 169 -- 209    
136 0.03623 0.6968 lmo1567 citZ -17.33 0.035419 8 -- 31 169 -- 198 citrate synthase  
32 0.006611 0.5515 lmo1649 N/A -18.63 0.019340 118 -- 153 171 -- 207 lmo1649  
65 0.01641 0.6733 lmo0040 N/A -17.01 0.040772 52 -- 100 171 -- 220 agmatine deiminase  
102 0.02619 0.6733 lmo1799 N/A -17.02 0.040600 38 -- 69 171 -- 207 peptidoglycan binding protein  
173 0.04847 0.7539 lmo1143 N/A -15.38 0.082828 238 -- 287 171 -- 211 PduT protein  
4 0.0009641 0.4469 lmo0851 N/A -23.35 0.001728 188 -- 220 172 -- 201 lmo0851  
144 0.03753 0.6968 lmo2422 N/A -16.62 0.048504 29 -- 68 172 -- 209 two-component response regulator  
153 0.04013 0.7027 lmo0979 N/A -16.44 0.052648 251 -- 296 172 -- 207 daunorubicin resistance ATP-binding protein  
192 0.05535 0.7607 lmo2025 nadA -15.59 0.075878 179 -- 223 172 -- 209 quinolinate synthetase  
96 0.02498 0.6733 lmo1278 clpQ -17.33 0.035430 185 -- 216 173 -- 203 ATP-dependent protease peptidase subunit  
43 0.009411 0.5889 lmo0325 N/A -15.65 0.074138 261 -- 289 174 -- 199 transcriptional regulator  
162 0.04462 0.7375 lmo2840 N/A -13.73 0.161226 169 -- 225 174 -- 208 sucrose phosphorylase  
199 0.05673 0.7607 lmo0888 N/A -13.34 0.187096 200 -- 237 174 -- 211    
68 0.01752 0.6733 lmo0547 N/A -17.81 0.028341 205 -- 246 175 -- 207 DeoR family transcriptional regulator  
129 0.03464 0.6968 lmo0756 N/A -20.18 0.009099 160 -- 214 175 -- 223 ABC transporter ATP-binding protein  
190 0.0551 0.7607 lmo0641 N/A -14.65 0.112053 196 -- 245 175 -- 211 heavy metal-transporting ATPase  
18 0.003504 0.4469 lmo0129 N/A -18.06 0.025228 187 -- 226 176 -- 203 N-acetylmuramoyl-L-alanine amidase  
76 0.01998 0.6733 lmo1751 N/A -17.90 0.027246 260 -- 292 176 -- 211 Uncharacterized RNA methyltransferase lmo1751  
87 0.02294 0.6733 lmo2765 N/A -17.07 0.039744 188 -- 213 176 -- 199 PTS cellbiose transporter subunit IIA  
36 0.007609 0.5562 lmo0649 N/A -18.52 0.020396 192 -- 219 177 -- 204 transcriptional regulator  
63 0.01551 0.6624 lmo2613 rplO -17.63 0.030853 185 -- 213 177 -- 203 50S ribosomal protein L15  
66 0.01668 0.6733 lmo0959 N/A -18.16 0.024105 185 -- 212 177 -- 206 undacaprenyl-phosphate N-acetylglucosaminyltransferase  
133 0.03548 0.6968 lmo2772 N/A -15.87 0.067267 191 -- 210 179 -- 199 PTS beta-glucoside transporter subunit IIABC  
197 0.05638 0.7607 lmo0344 N/A -15.66 0.073858 267 -- 298 182 -- 211 short chain dehydrogenase  
127 0.03392 0.6968 lmo2096 N/A -16.75 0.045974 122 -- 137 183 -- 198 PTS galacticol transporter subunit IIC  
188 0.05492 0.7607 lmo1246 N/A -15.64 0.074442 171 -- 206 183 -- 211 ATP-dependent RNA helicase  
108 0.02743 0.6733 lmo2330 N/A -16.53 0.050546 195 -- 214 191 -- 207    
141 0.03665 0.6968 lmo1798 N/A -14.74 0.108024 280 -- 295 194 -- 209    
169 0.04649 0.7403 lmo0268 N/A -16.22 0.057928 275 -- 284 195 -- 204 phosphoglycerate mutase  
131 0.03528 0.6968 lmo0788 N/A -16.25 0.057193 177 -- 197 197 -- 213 lmo0788  

Details of Selected Interaction Download Interaction Details 

mRNA

sRNA


		

		

		

		
		

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

		
 
		
		

		
		

		
		
		
		
Evolutionary conservation of mRNA targets
			(alignment generated with
			Jalview)

		
		
		
Evolutionary conservation of sRNA
			(alignment generated with
			Jalview)

		
		
		

		
	

	
	
	

	
	
	




			 
	





	
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Results are computed with CopraRNA version 2.1.2



		 
	

			





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