155 |
0.03087 |
0.6177 |
b1003 |
yccJ |
-9.03 |
0.064630 |
130 -- 145 |
43 -- 56 |
uncharacterized protein |
|
_____________129______________146\n_____________|________________|\n5'-CCU...UUGCU_____UC_________AUGUC...GGU-3'\n______________CGUUA__AAGGGGAAU\n______________|||:|__|||:|||||\n______________GCAGU__UUCUCCUUA\n3'-UUU...ACCGG________________AAGUA...ACA-5'\n_____________|________________|\n_____________57_______________42\n |
139 -- 145 |
43 -- 49 |
-13.8314 kcal/mol |
3.84343 kcal/mol |
0.953958 kcal/mol |
129 146@LB@ | |@LB@5'-CCU...UUGCU UC AUGUC...GGU-3'@LB@ CGUUA AAGGGGAAU@LB@ |||:| |||:|||||@LB@ GCAGU UUCUCCUUA@LB@3'-UUU...ACCGG AAGUA...ACA-5'@LB@ | |@LB@ 57 42@LB@@LB@@LB@Energy -9.03 kcal/mol@LB@Hybridization Energy -13.8314 kcal/mol@LB@Unfolding Energy - mRNA 3.84343 kcal/mol@LB@Unfolding Energy - sRNA 0.953958 kcal/mol@LB@@LB@Position - mRNA 130 -- 145@LB@Position - sRNA 43 -- 56@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 43 -- 49@LB@ |
79 |
0.01695 |
0.6177 |
b0435 |
bolA |
-9.02 |
0.064980 |
184 -- 202 |
38 -- 55 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________183_________________203\n_____________|___________________|\n5'-UGA...GCGUU___G______AU_______GAUGA...CCG-3'\n______________GUC_GAGGAG__AUUUCAU\n______________|||_:|:|||__|||||||\n______________CAG_UUUCUC__UAAAGUA\n3'-UUU...CCGGG__________CU_______AAAAA...ACA-5'\n_____________|___________________|\n_____________56__________________37\n |
196 -- 202 |
38 -- 44 |
-15.2358 kcal/mol |
5.04311 kcal/mol |
1.17036 kcal/mol |
183 203@LB@ | |@LB@5'-UGA...GCGUU G AU GAUGA...CCG-3'@LB@ GUC GAGGAG AUUUCAU@LB@ ||| :|:||| |||||||@LB@ CAG UUUCUC UAAAGUA@LB@3'-UUU...CCGGG CU AAAAA...ACA-5'@LB@ | |@LB@ 56 37@LB@@LB@@LB@Energy -9.02 kcal/mol@LB@Hybridization Energy -15.2358 kcal/mol@LB@Unfolding Energy - mRNA 5.04311 kcal/mol@LB@Unfolding Energy - sRNA 1.17036 kcal/mol@LB@@LB@Position - mRNA 184 -- 202@LB@Position - sRNA 38 -- 55@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 38 -- 44@LB@ |
157 |
0.03134 |
0.6177 |
b4086 |
alsC |
-8.98 |
0.066369 |
183 -- 191 |
45 -- 53 |
D-allose ABC transporter permease |
|
_____________182_______192\n_____________|_________|\n5'-CGC...AUGAG_________GAUUA...CGA-3'\n______________CGAAGAGGA\n______________|:|||||||\n______________GUUUCUCCU\n3'-UUU...GGGCA_________UAAAG...ACA-5'\n_____________|_________|\n_____________54________44\n |
185 -- 191 |
45 -- 51 |
-13.528 kcal/mol |
3.63363 kcal/mol |
0.917553 kcal/mol |
182 192@LB@ | |@LB@5'-CGC...AUGAG GAUUA...CGA-3'@LB@ CGAAGAGGA@LB@ |:|||||||@LB@ GUUUCUCCU@LB@3'-UUU...GGGCA UAAAG...ACA-5'@LB@ | |@LB@ 54 44@LB@@LB@@LB@Energy -8.98 kcal/mol@LB@Hybridization Energy -13.528 kcal/mol@LB@Unfolding Energy - mRNA 3.63363 kcal/mol@LB@Unfolding Energy - sRNA 0.917553 kcal/mol@LB@@LB@Position - mRNA 183 -- 191@LB@Position - sRNA 45 -- 53@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 45 -- 51@LB@ |
109 |
0.02227 |
0.6177 |
b4040 |
ubiA |
-8.97 |
0.066674 |
182 -- 194 |
44 -- 55 |
p-hydroxybenzoate octaprenyltransferase |
|
_____________181___________195\n_____________|_____________|\n5'-AGC...CCGUU__A_U________AAAAA...UAU-3'\n______________GU_C_AAGAGGAA\n______________||_|_||||||||\n______________CA_G_UUCUCCUU\n3'-UUU...CCGGG____U________AAAGU...ACA-5'\n_____________|_____________|\n_____________56____________43\n |
188 -- 194 |
44 -- 50 |
-10.7786 kcal/mol |
0.870226 kcal/mol |
0.941432 kcal/mol |
181 195@LB@ | |@LB@5'-AGC...CCGUU A U AAAAA...UAU-3'@LB@ GU C AAGAGGAA@LB@ || | ||||||||@LB@ CA G UUCUCCUU@LB@3'-UUU...CCGGG U AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -8.97 kcal/mol@LB@Hybridization Energy -10.7786 kcal/mol@LB@Unfolding Energy - mRNA 0.870226 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 182 -- 194@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 44 -- 50@LB@ |
95 |
0.01894 |
0.6177 |
b0407 |
yajC |
-8.94 |
0.067585 |
73 -- 105 |
45 -- 79 |
SecYEG protein translocase auxillary subunit |
|
_____________72___________________________________106\n_____________|____________________________________|\n5'-UCU...CGUUU______G___U_A___AA______A___________UAAAU...UUU-3'\n______________GAUGGC_GGU_U_CGC____GGCU__UUGAAGAGGG\n______________:|||||_::|_|_|||____|||:__|::||||||:\n______________UUACCG_UUA_A_GCG____CCGG__AGUUUCUCCU\n______3'-UUUUU______G___U_____AUAA____GC__________UAAAG...ACA-5'\n_____________|____________________________________|\n_____________80___________________________________44\n |
99 -- 105 |
45 -- 51 |
-30.8043 kcal/mol |
8.31146 kcal/mol |
13.5551 kcal/mol |
72 106@LB@ | |@LB@5'-UCU...CGUUU G U A AA A UAAAU...UUU-3'@LB@ GAUGGC GGU U CGC GGCU UUGAAGAGGG@LB@ :||||| ::| | ||| |||: |::||||||:@LB@ UUACCG UUA A GCG CCGG AGUUUCUCCU@LB@ 3'-UUUUU G U AUAA GC UAAAG...ACA-5'@LB@ | |@LB@ 80 44@LB@@LB@@LB@Energy -8.94 kcal/mol@LB@Hybridization Energy -30.8043 kcal/mol@LB@Unfolding Energy - mRNA 8.31146 kcal/mol@LB@Unfolding Energy - sRNA 13.5551 kcal/mol@LB@@LB@Position - mRNA 73 -- 105@LB@Position - sRNA 45 -- 79@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 45 -- 51@LB@ |
117 |
0.02321 |
0.6177 |
b1712 |
ihfA |
-8.91 |
0.068436 |
115 -- 126 |
45 -- 56 |
integration host factor (IHF) DNA-binding protein alpha subunit |
|
_____________114__________127\n_____________|____________|\n5'-CGU...ACACU__AA________GAUUG...AGA-3'\n______________CG__GAAGAGGA\n______________||__:|||||||\n______________GC__UUUCUCCU\n3'-UUU...ACCGG__AG________UAAAG...ACA-5'\n_____________|____________|\n_____________57___________44\n |
120 -- 126 |
45 -- 51 |
-12.2887 kcal/mol |
2.43966 kcal/mol |
0.938337 kcal/mol |
114 127@LB@ | |@LB@5'-CGU...ACACU AA GAUUG...AGA-3'@LB@ CG GAAGAGGA@LB@ || :|||||||@LB@ GC UUUCUCCU@LB@3'-UUU...ACCGG AG UAAAG...ACA-5'@LB@ | |@LB@ 57 44@LB@@LB@@LB@Energy -8.91 kcal/mol@LB@Hybridization Energy -12.2887 kcal/mol@LB@Unfolding Energy - mRNA 2.43966 kcal/mol@LB@Unfolding Energy - sRNA 0.938337 kcal/mol@LB@@LB@Position - mRNA 115 -- 126@LB@Position - sRNA 45 -- 56@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 45 -- 51@LB@ |
26 |
0.004859 |
0.5992 |
b1753 |
ynjA |
-8.90 |
0.068656 |
186 -- 195 |
43 -- 52 |
carboxymuconolactone decarboxylase family protein |
|
_____________185________196\n_____________|__________|\n5'-ACU...CGCCA__________GCCUG...GGU-3'\n______________GAAGAGGAAU\n______________:|||||||||\n______________UUUCUCCUUA\n3'-UUU...GGCAG__________AAGUA...ACA-5'\n_____________|__________|\n_____________53_________42\n |
189 -- 195 |
43 -- 49 |
-11.6028 kcal/mol |
1.83308 kcal/mol |
0.865937 kcal/mol |
185 196@LB@ | |@LB@5'-ACU...CGCCA GCCUG...GGU-3'@LB@ GAAGAGGAAU@LB@ :|||||||||@LB@ UUUCUCCUUA@LB@3'-UUU...GGCAG AAGUA...ACA-5'@LB@ | |@LB@ 53 42@LB@@LB@@LB@Energy -8.90 kcal/mol@LB@Hybridization Energy -11.6028 kcal/mol@LB@Unfolding Energy - mRNA 1.83308 kcal/mol@LB@Unfolding Energy - sRNA 0.865937 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 43 -- 52@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 43 -- 49@LB@ |
29 |
0.005664 |
0.6127 |
b3831 |
udp |
-8.88 |
0.069383 |
184 -- 196 |
42 -- 54 |
uridine phosphorylase |
|
_____________183___________197\n_____________|_____________|\n5'-AUC...CCGAU___C_________GUAUA...AGA-3'\n______________UCA_AGAGGAGUU\n______________|||_||||||:||\n______________AGU_UCUCCUUAA\n3'-UUU...CGGGC___U_________AGUAA...ACA-5'\n_____________|_____________|\n_____________55____________41\n |
190 -- 196 |
42 -- 48 |
-14.4874 kcal/mol |
4.66075 kcal/mol |
0.945538 kcal/mol |
183 197@LB@ | |@LB@5'-AUC...CCGAU C GUAUA...AGA-3'@LB@ UCA AGAGGAGUU@LB@ ||| ||||||:||@LB@ AGU UCUCCUUAA@LB@3'-UUU...CGGGC U AGUAA...ACA-5'@LB@ | |@LB@ 55 41@LB@@LB@@LB@Energy -8.88 kcal/mol@LB@Hybridization Energy -14.4874 kcal/mol@LB@Unfolding Energy - mRNA 4.66075 kcal/mol@LB@Unfolding Energy - sRNA 0.945538 kcal/mol@LB@@LB@Position - mRNA 184 -- 196@LB@Position - sRNA 42 -- 54@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 42 -- 48@LB@ |
45 |
0.009176 |
0.6129 |
b3389 |
aroB |
-8.88 |
0.069424 |
203 -- 218 |
37 -- 52 |
3-dehydroquinate synthase |
|
_____________202______________219\n_____________|________________|\n5'-ACA...GUUAU________UUG_____ACUCU...CGG-3'\n______________GGAGAGGA___UCGUU\n______________::||||||___||:||\n______________UUUCUCCU___AGUAA\n3'-UUU...GGCAG________UAA_____AAAAA...ACA-5'\n_____________|________________|\n_____________53_______________36\n |
204 -- 210 |
45 -- 51 |
-14.6346 kcal/mol |
4.67835 kcal/mol |
1.07641 kcal/mol |
202 219@LB@ | |@LB@5'-ACA...GUUAU UUG ACUCU...CGG-3'@LB@ GGAGAGGA UCGUU@LB@ ::|||||| ||:||@LB@ UUUCUCCU AGUAA@LB@3'-UUU...GGCAG UAA AAAAA...ACA-5'@LB@ | |@LB@ 53 36@LB@@LB@@LB@Energy -8.88 kcal/mol@LB@Hybridization Energy -14.6346 kcal/mol@LB@Unfolding Energy - mRNA 4.67835 kcal/mol@LB@Unfolding Energy - sRNA 1.07641 kcal/mol@LB@@LB@Position - mRNA 203 -- 218@LB@Position - sRNA 37 -- 52@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 45 -- 51@LB@ |
165 |
0.0337 |
0.6177 |
b3983 |
rplK |
-8.80 |
0.071896 |
189 -- 197 |
41 -- 49 |
50S ribosomal subunit protein L11 |
|
_____________188_______198\n_____________|_________|\n5'-ACC...AACUU_________AUAAU...UAA-3'\n______________GAGGAAUUU\n______________|||||||||\n______________CUCCUUAAA\n3'-UUU...AGUUU_________GUAAA...ACA-5'\n_____________|_________|\n_____________50________40\n |
191 -- 197 |
41 -- 47 |
-11.4231 kcal/mol |
1.76644 kcal/mol |
0.852225 kcal/mol |
188 198@LB@ | |@LB@5'-ACC...AACUU AUAAU...UAA-3'@LB@ GAGGAAUUU@LB@ |||||||||@LB@ CUCCUUAAA@LB@3'-UUU...AGUUU GUAAA...ACA-5'@LB@ | |@LB@ 50 40@LB@@LB@@LB@Energy -8.80 kcal/mol@LB@Hybridization Energy -11.4231 kcal/mol@LB@Unfolding Energy - mRNA 1.76644 kcal/mol@LB@Unfolding Energy - sRNA 0.852225 kcal/mol@LB@@LB@Position - mRNA 189 -- 197@LB@Position - sRNA 41 -- 49@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 41 -- 47@LB@ |