| 146 |
0.008611 |
0.2059 |
b3750 |
rbsC |
-8.88 |
0.223197 |
137 -- 159 |
56 -- 77 |
D-ribose ABC transporter permease |
|
_____________136_______________________160\n_____________|_________________________|\n5'-GAU...AGGCC_____________G_UAA_______CGCUG...UCU-3'\n______________AC_CCA_GGAAGU_U___UGGCUGC\n______________||_|||_||||:|_|___|||||||\n______________UG_GGU_CCUUUA_A___ACCGACG\n3'-UUU...GCGGU__U___C______G___________CGGCA...GUG-5'\n_____________|_________________________|\n_____________78________________________55\n |
153 -- 159 |
56 -- 62 |
-22.4095 kcal/mol |
5.11916 kcal/mol |
8.4081 kcal/mol |
136 160@LB@ | |@LB@5'-GAU...AGGCC G UAA CGCUG...UCU-3'@LB@ AC CCA GGAAGU U UGGCUGC@LB@ || ||| ||||:| | |||||||@LB@ UG GGU CCUUUA A ACCGACG@LB@3'-UUU...GCGGU U C G CGGCA...GUG-5'@LB@ | |@LB@ 78 55@LB@@LB@@LB@Energy -8.88 kcal/mol@LB@Hybridization Energy -22.4095 kcal/mol@LB@Unfolding Energy - mRNA 5.11916 kcal/mol@LB@Unfolding Energy - sRNA 8.4081 kcal/mol@LB@@LB@Position - mRNA 137 -- 159@LB@Position - sRNA 56 -- 77@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 11 |
0.0004411 |
0.1198 |
b3154 |
yhbP |
-10.16 |
0.129625 |
138 -- 186 |
18 -- 75 |
UPF0306 family protein |
|
_____________137_________________________________________________________187\n_____________|___________________________________________________________|\n5'-AAA...AAGAA_______U____AUC_U________CAU______________GU_____CC________AAAAG...UUU-3'\n______________ACCAGGG__GUC___G_CUGCGUCG___GUUA________AG___CAGG__CACAGUAU\n______________|||||||__:||___|_|||||:||___:|||________||___||:|__|||||:|:\n______________UGGUCCC__UAG___C_GACGCGGC___UAAU________UC___GUUC__GUGUCGUG\n3'-UUU...GGUUG_______UU___AAC__________AUU____AAUACUAC__AAU____CC________ACAAA...GUG-5'\n_____________|___________________________________________________________|\n_____________76__________________________________________________________17\n |
155 -- 161 |
52 -- 58 |
-41.8924 kcal/mol |
11.5669 kcal/mol |
20.1571 kcal/mol |
137 187@LB@ | |@LB@5'-AAA...AAGAA U AUC U CAU GU CC AAAAG...UUU-3'@LB@ ACCAGGG GUC G CUGCGUCG GUUA AG CAGG CACAGUAU@LB@ ||||||| :|| | |||||:|| :||| || ||:| |||||:|:@LB@ UGGUCCC UAG C GACGCGGC UAAU UC GUUC GUGUCGUG@LB@3'-UUU...GGUUG UU AAC AUU AAUACUAC AAU CC ACAAA...GUG-5'@LB@ | |@LB@ 76 17@LB@@LB@@LB@Energy -10.16 kcal/mol@LB@Hybridization Energy -41.8924 kcal/mol@LB@Unfolding Energy - mRNA 11.5669 kcal/mol@LB@Unfolding Energy - sRNA 20.1571 kcal/mol@LB@@LB@Position - mRNA 138 -- 186@LB@Position - sRNA 18 -- 75@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 78 |
0.004296 |
0.1855 |
b3258 |
panF |
-10.37 |
0.118507 |
142 -- 153 |
52 -- 62 |
pantothenate:sodium symporter |
|
_____________141__________154\n_____________|____________|\n5'-GGC...UUUAU___A________GGCGA...UUA-3'\n______________UGG_CUGUGCUG\n______________|||_|||:||:|\n______________ACC_GACGCGGC\n3'-UUU...UUAGA____________AUUUA...GUG-5'\n_____________|____________|\n_____________63___________51\n |
147 -- 153 |
52 -- 58 |
-17.1407 kcal/mol |
1.89201 kcal/mol |
4.8804 kcal/mol |
141 154@LB@ | |@LB@5'-GGC...UUUAU A GGCGA...UUA-3'@LB@ UGG CUGUGCUG@LB@ ||| |||:||:|@LB@ ACC GACGCGGC@LB@3'-UUU...UUAGA AUUUA...GUG-5'@LB@ | |@LB@ 63 51@LB@@LB@@LB@Energy -10.37 kcal/mol@LB@Hybridization Energy -17.1407 kcal/mol@LB@Unfolding Energy - mRNA 1.89201 kcal/mol@LB@Unfolding Energy - sRNA 4.8804 kcal/mol@LB@@LB@Position - mRNA 142 -- 153@LB@Position - sRNA 52 -- 62@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 196 |
0.01202 |
0.2159 |
b1729 |
ydjN |
-13.87 |
0.024594 |
143 -- 155 |
72 -- 84 |
putative transporter |
|
_____________142___________156\n_____________|_____________|\n5'-CAU...AAUCU_____________UGACU...UGC-3'\n______________UGCGCCAACACUA\n______________|||||||||||:|\n______________ACGCGGUUGUGGU\n3'-UUU...UUAUG_____________CCCUU...GUG-5'\n_____________|_____________|\n_____________85____________71\n |
149 -- 155 |
72 -- 78 |
-23.7045 kcal/mol |
2.6326 kcal/mol |
7.20328 kcal/mol |
142 156@LB@ | |@LB@5'-CAU...AAUCU UGACU...UGC-3'@LB@ UGCGCCAACACUA@LB@ |||||||||||:|@LB@ ACGCGGUUGUGGU@LB@3'-UUU...UUAUG CCCUU...GUG-5'@LB@ | |@LB@ 85 71@LB@@LB@@LB@Energy -13.87 kcal/mol@LB@Hybridization Energy -23.7045 kcal/mol@LB@Unfolding Energy - mRNA 2.6326 kcal/mol@LB@Unfolding Energy - sRNA 7.20328 kcal/mol@LB@@LB@Position - mRNA 143 -- 155@LB@Position - sRNA 72 -- 84@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 144 |
0.008344 |
0.2033 |
b3159 |
yhbV |
-10.12 |
0.132236 |
144 -- 228 |
15 -- 82 |
U32 peptidase family protein |
|
_____________143______________________________________________________________________________________229\n_____________|________________________________________________________________________________________|\n5'-GUG...AUGUC__AA_____G__AACCAC__________AUAUCA________GGCA_______AAA___AUGAAAUAUUCCUU_______________GGUAC...AUC-3'\n______________CG__GGCAC_CA______UCUUGGC_GC______CCGUAAAU____GUGA_GA___GCA______________AGGGC_CAGUGCUGU\n______________||__::|||_||______|||||||_||______||||||||____:|||_||___:||______________|||||_|||::||||\n______________GC__UUGUG_GU______AGAACCG_CG______GGCAUUUA____UACU_CU___UGU______________UCCCG_GUCGUGACA\n3'-UUU...AUGAC__GG________CCCUUU_______A__C_____________AUAA____A__CAA______________________U_________AAAAG...GUG-5'\n_____________|________________________________________________________________________________________|\n_____________83_______________________________________________________________________________________14\n |
177 -- 183 |
48 -- 54 |
-52.1529 kcal/mol |
19.8598 kcal/mol |
22.1763 kcal/mol |
143 229@LB@ | |@LB@5'-GUG...AUGUC AA G AACCAC AUAUCA GGCA AAA AUGAAAUAUUCCUU GGUAC...AUC-3'@LB@ CG GGCAC CA UCUUGGC GC CCGUAAAU GUGA GA GCA AGGGC CAGUGCUGU@LB@ || ::||| || ||||||| || |||||||| :||| || :|| ||||| |||::||||@LB@ GC UUGUG GU AGAACCG CG GGCAUUUA UACU CU UGU UCCCG GUCGUGACA@LB@3'-UUU...AUGAC GG CCCUUU A C AUAA A CAA U AAAAG...GUG-5'@LB@ | |@LB@ 83 14@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -52.1529 kcal/mol@LB@Unfolding Energy - mRNA 19.8598 kcal/mol@LB@Unfolding Energy - sRNA 22.1763 kcal/mol@LB@@LB@Position - mRNA 144 -- 228@LB@Position - sRNA 15 -- 82@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 29 |
0.001588 |
0.1727 |
b4371 |
rsmC |
-11.43 |
0.073969 |
145 -- 160 |
74 -- 89 |
16S rRNA m(2)G1207 methyltransferase SAM-dependent |
|
_____________144______________161\n_____________|________________|\n5'-AUC...UCGUC_____C__________AUGGC...UGC-3'\n______________GAUAC_GCGCCAACAU\n______________:||||_|||||||||:\n______________UUAUG_CGCGGUUGUG\n3'-UUU...CGCGC_____A__________GUCCC...GUG-5'\n_____________|________________|\n_____________90_______________73\n |
154 -- 160 |
74 -- 80 |
-22.1753 kcal/mol |
3.46317 kcal/mol |
7.27848 kcal/mol |
144 161@LB@ | |@LB@5'-AUC...UCGUC C AUGGC...UGC-3'@LB@ GAUAC GCGCCAACAU@LB@ :|||| |||||||||:@LB@ UUAUG CGCGGUUGUG@LB@3'-UUU...CGCGC A GUCCC...GUG-5'@LB@ | |@LB@ 90 73@LB@@LB@@LB@Energy -11.43 kcal/mol@LB@Hybridization Energy -22.1753 kcal/mol@LB@Unfolding Energy - mRNA 3.46317 kcal/mol@LB@Unfolding Energy - sRNA 7.27848 kcal/mol@LB@@LB@Position - mRNA 145 -- 160@LB@Position - sRNA 74 -- 89@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 119 |
0.006508 |
0.1913 |
b3834 |
ubiJ |
-9.73 |
0.156135 |
145 -- 181 |
28 -- 78 |
aerobic ubiquinone synthesis protein SCP2 family protein |
|
_____________144_________________________________________________182\n_____________|___________________________________________________|\n5'-GCU...AAUCU____G______UUGUGGC_____A___________________________UUCUG...UGG-3'\n______________GACG_CAGGGG_______GCUGC_UCGU______________GGUUAUAAG\n______________:||:_|||||:_______|||||_:|||______________:||||:|||\n______________UUGU_GUCCCU_______CGACG_GGCA______________UCAAUGUUC\n3'-UUU...CGCGG____G______UUAGAAC_____C____UUUAAUAAUACUAC_________CCGUG...GUG-5'\n_____________|___________________________________________________|\n_____________79__________________________________________________27\n |
175 -- 181 |
28 -- 34 |
-33.2852 kcal/mol |
14.1676 kcal/mol |
9.38606 kcal/mol |
144 182@LB@ | |@LB@5'-GCU...AAUCU G UUGUGGC A UUCUG...UGG-3'@LB@ GACG CAGGGG GCUGC UCGU GGUUAUAAG@LB@ :||: |||||: ||||| :||| :||||:|||@LB@ UUGU GUCCCU CGACG GGCA UCAAUGUUC@LB@3'-UUU...CGCGG G UUAGAAC C UUUAAUAAUACUAC CCGUG...GUG-5'@LB@ | |@LB@ 79 27@LB@@LB@@LB@Energy -9.73 kcal/mol@LB@Hybridization Energy -33.2852 kcal/mol@LB@Unfolding Energy - mRNA 14.1676 kcal/mol@LB@Unfolding Energy - sRNA 9.38606 kcal/mol@LB@@LB@Position - mRNA 145 -- 181@LB@Position - sRNA 28 -- 78@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 22 |
0.001393 |
0.1727 |
b0794 |
ybhF |
-14.07 |
0.022426 |
148 -- 164 |
67 -- 84 |
putative ABC transporter ATPase |
|
_____________147________________165\n_____________|__________________|\n5'-UAC...GAUGA__________________UGCCA...GUU-3'\n______________UGCGUU_ACGCCAGGGAA\n______________||||::_||:||||||||\n______________ACGCGG_UGUGGUCCCUU\n3'-UUU...UUAUG______U___________UAGAA...GUG-5'\n_____________|__________________|\n_____________85_________________66\n |
158 -- 164 |
67 -- 73 |
-27.705 kcal/mol |
6.27905 kcal/mol |
7.35473 kcal/mol |
147 165@LB@ | |@LB@5'-UAC...GAUGA UGCCA...GUU-3'@LB@ UGCGUU ACGCCAGGGAA@LB@ ||||:: ||:||||||||@LB@ ACGCGG UGUGGUCCCUU@LB@3'-UUU...UUAUG U UAGAA...GUG-5'@LB@ | |@LB@ 85 66@LB@@LB@@LB@Energy -14.07 kcal/mol@LB@Hybridization Energy -27.705 kcal/mol@LB@Unfolding Energy - mRNA 6.27905 kcal/mol@LB@Unfolding Energy - sRNA 7.35473 kcal/mol@LB@@LB@Position - mRNA 148 -- 164@LB@Position - sRNA 67 -- 84@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 167 |
0.009922 |
0.2071 |
b0367 |
tauC |
-5.98 |
0.628340 |
152 -- 162 |
85 -- 95 |
taurine ABC transporter permease |
|
_____________151_________163\n_____________|___________|\n5'-AUA...CGCCA___________GUUUU...UUU-3'\n______________UGCGCGAAUAU\n______________||||||||||:\n______________ACGCGCUUAUG\n3'-UUU...GCCCC___________ACGCG...GUG-5'\n_____________|___________|\n_____________96__________84\n |
154 -- 160 |
87 -- 93 |
-16.0697 kcal/mol |
4.17782 kcal/mol |
5.90856 kcal/mol |
151 163@LB@ | |@LB@5'-AUA...CGCCA GUUUU...UUU-3'@LB@ UGCGCGAAUAU@LB@ ||||||||||:@LB@ ACGCGCUUAUG@LB@3'-UUU...GCCCC ACGCG...GUG-5'@LB@ | |@LB@ 96 84@LB@@LB@@LB@Energy -5.98 kcal/mol@LB@Hybridization Energy -16.0697 kcal/mol@LB@Unfolding Energy - mRNA 4.17782 kcal/mol@LB@Unfolding Energy - sRNA 5.90856 kcal/mol@LB@@LB@Position - mRNA 152 -- 162@LB@Position - sRNA 85 -- 95@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 87 -- 93@LB@ |
| 181 |
0.0108 |
0.2089 |
b1683 |
sufB |
-11.33 |
0.077347 |
153 -- 175 |
52 -- 74 |
component of SufBCD Fe-S cluster assembly scaffold |
|
_____________152_______________________176\n_____________|_________________________|\n5'-GUU...AAAGC____AAU___UG__________G__AAAGC...AGC-3'\n______________CCAG___GAA____UGGCUGUG_CG\n______________||||___|||____||||||:|_||\n______________GGUC___CUU____ACCGACGC_GC\n3'-UUU...GUUGU____C_____UAGA________G__AUUUA...GUG-5'\n_____________|_________________________|\n_____________75________________________51\n |
166 -- 172 |
55 -- 61 |
-23.8546 kcal/mol |
3.76094 kcal/mol |
8.7601 kcal/mol |
152 176@LB@ | |@LB@5'-GUU...AAAGC AAU UG G AAAGC...AGC-3'@LB@ CCAG GAA UGGCUGUG CG@LB@ |||| ||| ||||||:| ||@LB@ GGUC CUU ACCGACGC GC@LB@3'-UUU...GUUGU C UAGA G AUUUA...GUG-5'@LB@ | |@LB@ 75 51@LB@@LB@@LB@Energy -11.33 kcal/mol@LB@Hybridization Energy -23.8546 kcal/mol@LB@Unfolding Energy - mRNA 3.76094 kcal/mol@LB@Unfolding Energy - sRNA 8.7601 kcal/mol@LB@@LB@Position - mRNA 153 -- 175@LB@Position - sRNA 52 -- 74@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 55 -- 61@LB@ |
