| 41 |
0.002142 |
0.1727 |
b2153 |
folE |
-10.82 |
0.097170 |
217 -- 276 |
53 -- 121 |
GTP cyclohydrolase I |
|
_____________216________________________________________________________________________277\n_____________|__________________________________________________________________________|\n5'-CUG...CAGUA______C__________CAU__AG__UUA_U________G____GA____________________________CGCCC...ACG-3'\n______________AAGAAG_GGCCCUGGUU___GA__CG___G_UGCGCGAG_ACUG____AACACC____________GCUGCGCC\n______________||:||:_|:|||:||:|___||__||___|_|||||||:_||||____||||||____________||||||||\n______________UUUUUU_CUGGGGCCGA___CU__GC___C_ACGCGCUU_UGAC____UUGUGG____________CGACGCGG\n___________3'-______A__________U____G___C___C________A____GCGG______UCCCUUUAGAAC________CAUUU...GUG-5'\n______________|_________________________________________________________________________|\n______________121_______________________________________________________________________52\n |
270 -- 276 |
53 -- 59 |
-62.0592 kcal/mol |
19.5041 kcal/mol |
31.7353 kcal/mol |
216 277@LB@ | |@LB@5'-CUG...CAGUA C CAU AG UUA U G GA CGCCC...ACG-3'@LB@ AAGAAG GGCCCUGGUU GA CG G UGCGCGAG ACUG AACACC GCUGCGCC@LB@ ||:||: |:|||:||:| || || | |||||||: |||| |||||| ||||||||@LB@ UUUUUU CUGGGGCCGA CU GC C ACGCGCUU UGAC UUGUGG CGACGCGG@LB@ 3'- A U G C C A GCGG UCCCUUUAGAAC CAUUU...GUG-5'@LB@ | |@LB@ 121 52@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -62.0592 kcal/mol@LB@Unfolding Energy - mRNA 19.5041 kcal/mol@LB@Unfolding Energy - sRNA 31.7353 kcal/mol@LB@@LB@Position - mRNA 217 -- 276@LB@Position - sRNA 53 -- 121@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 182 |
0.01083 |
0.2089 |
b0314 |
betT |
-9.44 |
0.176432 |
217 -- 228 |
66 -- 77 |
choline transporter of high affinity |
|
_____________216__________229\n_____________|____________|\n5'-UUC...UUCAC___G________AGGAC...UCC-3'\n______________ACA_CAGGGAAA\n______________|||_||||||||\n______________UGU_GUCCCUUU\n3'-UUU...GCGGU___G________AGAAC...GUG-5'\n_____________|____________|\n_____________78___________65\n |
222 -- 228 |
66 -- 72 |
-15.8835 kcal/mol |
1.82432 kcal/mol |
4.61119 kcal/mol |
216 229@LB@ | |@LB@5'-UUC...UUCAC G AGGAC...UCC-3'@LB@ ACA CAGGGAAA@LB@ ||| ||||||||@LB@ UGU GUCCCUUU@LB@3'-UUU...GCGGU G AGAAC...GUG-5'@LB@ | |@LB@ 78 65@LB@@LB@@LB@Energy -9.44 kcal/mol@LB@Hybridization Energy -15.8835 kcal/mol@LB@Unfolding Energy - mRNA 1.82432 kcal/mol@LB@Unfolding Energy - sRNA 4.61119 kcal/mol@LB@@LB@Position - mRNA 217 -- 228@LB@Position - sRNA 66 -- 77@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 50 |
0.002535 |
0.1727 |
b1879 |
flhA |
-12.13 |
0.054078 |
218 -- 247 |
64 -- 89 |
putative flagellar export pore protein |
|
_____________217______________________________248\n_____________|________________________________|\n5'-GCC...GCCGC___________U__CCGCAA___U________GACAC...CGA-3'\n______________GAUGCUGCGCC_GC______ACC___GAAAUC\n______________:||:|||||||_:|______|||___||||||\n______________UUAUGACGCGG_UG______UGG___CUUUAG\n3'-UUU...CGCGC___________U___________UCC______AACCG...GUG-5'\n_____________|________________________________|\n_____________90_______________________________63\n |
222 -- 228 |
79 -- 85 |
-26.8051 kcal/mol |
6.79061 kcal/mol |
7.88317 kcal/mol |
217 248@LB@ | |@LB@5'-GCC...GCCGC U CCGCAA U GACAC...CGA-3'@LB@ GAUGCUGCGCC GC ACC GAAAUC@LB@ :||:||||||| :| ||| ||||||@LB@ UUAUGACGCGG UG UGG CUUUAG@LB@3'-UUU...CGCGC U UCC AACCG...GUG-5'@LB@ | |@LB@ 90 63@LB@@LB@@LB@Energy -12.13 kcal/mol@LB@Hybridization Energy -26.8051 kcal/mol@LB@Unfolding Energy - mRNA 6.79061 kcal/mol@LB@Unfolding Energy - sRNA 7.88317 kcal/mol@LB@@LB@Position - mRNA 218 -- 247@LB@Position - sRNA 64 -- 89@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 58 |
0.002925 |
0.1727 |
b0427 |
yajR |
-11.14 |
0.084219 |
218 -- 238 |
54 -- 78 |
putative transporter |
|
_____________217________________________239\n_____________|__________________________|\n5'-CGU...AAAAU_________U________________GACCU...CGG-3'\n______________GACGCCAGG_GAGA____GGC_GCGC\n______________:||:|||||_||:|____|||_||||\n______________UUGUGGUCC_CUUU____CCG_CGCG\n3'-UUU...CGCGG______________AGAA___A____GCAUU...GUG-5'\n_____________|__________________________|\n_____________79_________________________53\n |
220 -- 226 |
70 -- 76 |
-28.7218 kcal/mol |
8.65047 kcal/mol |
8.92888 kcal/mol |
217 239@LB@ | |@LB@5'-CGU...AAAAU U GACCU...CGG-3'@LB@ GACGCCAGG GAGA GGC GCGC@LB@ :||:||||| ||:| ||| ||||@LB@ UUGUGGUCC CUUU CCG CGCG@LB@3'-UUU...CGCGG AGAA A GCAUU...GUG-5'@LB@ | |@LB@ 79 53@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -28.7218 kcal/mol@LB@Unfolding Energy - mRNA 8.65047 kcal/mol@LB@Unfolding Energy - sRNA 8.92888 kcal/mol@LB@@LB@Position - mRNA 218 -- 238@LB@Position - sRNA 54 -- 78@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 88 |
0.004799 |
0.1855 |
b2213 |
ada |
-9.32 |
0.185618 |
222 -- 245 |
63 -- 86 |
fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase |
|
_____________221________________________246\n_____________|__________________________|\n5'-GGA...GCUUA____A__A__________C_______GUCUU...CCA-3'\n______________ACUG_CG_UCAACGCUGG___AAUCU\n______________||||_||_:||||:|::|___|||||\n______________UGAC_GC_GGUUGUGGUC___UUAGA\n3'-UUU...GCUUA__________________CCU_____ACCGA...GUG-5'\n_____________|__________________________|\n_____________87_________________________62\n |
233 -- 239 |
71 -- 77 |
-21.7615 kcal/mol |
5.05104 kcal/mol |
7.38602 kcal/mol |
221 246@LB@ | |@LB@5'-GGA...GCUUA A A C GUCUU...CCA-3'@LB@ ACUG CG UCAACGCUGG AAUCU@LB@ |||| || :||||:|::| |||||@LB@ UGAC GC GGUUGUGGUC UUAGA@LB@3'-UUU...GCUUA CCU ACCGA...GUG-5'@LB@ | |@LB@ 87 62@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -21.7615 kcal/mol@LB@Unfolding Energy - mRNA 5.05104 kcal/mol@LB@Unfolding Energy - sRNA 7.38602 kcal/mol@LB@@LB@Position - mRNA 222 -- 245@LB@Position - sRNA 63 -- 86@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 180 |
0.01069 |
0.2089 |
b4529 |
ydbJ |
-7.20 |
0.426635 |
222 -- 243 |
41 -- 61 |
DUF333 family putative lipoprotein |
|
_____________221____________________244\n_____________|______________________|\n5'-GCA...GGGUA__G_______C_UU________CGGCG...GUU-3'\n______________GG_UGUGCCG_U__AUUGUUGU\n______________||_||:||||_|__|||:||:|\n______________CC_ACGCGGC_A__UAAUAAUA\n3'-UUU...UAGAA__G_________UU________CUACU...GUG-5'\n_____________|______________________|\n_____________62_____________________40\n |
225 -- 231 |
52 -- 58 |
-21.8046 kcal/mol |
7.13894 kcal/mol |
7.46625 kcal/mol |
221 244@LB@ | |@LB@5'-GCA...GGGUA G C UU CGGCG...GUU-3'@LB@ GG UGUGCCG U AUUGUUGU@LB@ || ||:|||| | |||:||:|@LB@ CC ACGCGGC A UAAUAAUA@LB@3'-UUU...UAGAA G UU CUACU...GUG-5'@LB@ | |@LB@ 62 40@LB@@LB@@LB@Energy -7.20 kcal/mol@LB@Hybridization Energy -21.8046 kcal/mol@LB@Unfolding Energy - mRNA 7.13894 kcal/mol@LB@Unfolding Energy - sRNA 7.46625 kcal/mol@LB@@LB@Position - mRNA 222 -- 243@LB@Position - sRNA 41 -- 61@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 9 |
0.0003241 |
0.1198 |
b1110 |
ycfJ |
-9.50 |
0.172514 |
224 -- 251 |
52 -- 76 |
uncharacterized protein |
|
_____________223__________________________252\n_____________|____________________________|\n5'-ACU...GCGGG_______AUU__U___GCA_________GGCGU...AAU-3'\n______________UAUCGGG___GG_GUC___GCUGCGCUG\n______________:|:|:||___|:_:||___|||||||:|\n______________GUGGUCC___CU_UAG___CGACGCGGC\n3'-UUU...CGGUU____________U___AAC_________AUUUA...GUG-5'\n_____________|____________________________|\n_____________77___________________________51\n |
245 -- 251 |
52 -- 58 |
-26.6822 kcal/mol |
7.91875 kcal/mol |
9.26585 kcal/mol |
223 252@LB@ | |@LB@5'-ACU...GCGGG AUU U GCA GGCGU...AAU-3'@LB@ UAUCGGG GG GUC GCUGCGCUG@LB@ :|:|:|| |: :|| |||||||:|@LB@ GUGGUCC CU UAG CGACGCGGC@LB@3'-UUU...CGGUU U AAC AUUUA...GUG-5'@LB@ | |@LB@ 77 51@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -26.6822 kcal/mol@LB@Unfolding Energy - mRNA 7.91875 kcal/mol@LB@Unfolding Energy - sRNA 9.26585 kcal/mol@LB@@LB@Position - mRNA 224 -- 251@LB@Position - sRNA 52 -- 76@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 47 |
0.002359 |
0.1727 |
b1520 |
yneE |
-16.33 |
0.007995 |
225 -- 237 |
50 -- 62 |
bestrophin family putative inner membrane protein |
|
_____________224___________238\n_____________|_____________|\n5'-CGU...AACAC_____________UUUUU...UCU-3'\n______________UGGCUGCGCCGUA\n______________|||||||||||||\n______________ACCGACGCGGCAU\n3'-UUU...UUAGA_____________UUAAU...GUG-5'\n_____________|_____________|\n_____________63____________49\n |
231 -- 237 |
50 -- 56 |
-27.5123 kcal/mol |
5.30923 kcal/mol |
5.87004 kcal/mol |
224 238@LB@ | |@LB@5'-CGU...AACAC UUUUU...UCU-3'@LB@ UGGCUGCGCCGUA@LB@ |||||||||||||@LB@ ACCGACGCGGCAU@LB@3'-UUU...UUAGA UUAAU...GUG-5'@LB@ | |@LB@ 63 49@LB@@LB@@LB@Energy -16.33 kcal/mol@LB@Hybridization Energy -27.5123 kcal/mol@LB@Unfolding Energy - mRNA 5.30923 kcal/mol@LB@Unfolding Energy - sRNA 5.87004 kcal/mol@LB@@LB@Position - mRNA 225 -- 237@LB@Position - sRNA 50 -- 62@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 10 |
0.0003497 |
0.1198 |
b2023 |
hisH |
-14.83 |
0.015853 |
226 -- 277 |
39 -- 86 |
imidazole glycerol phosphate synthase glutamine amidotransferase subunit |
|
_____________225____________________________________________________278\n_____________|______________________________________________________|\n5'-GUG...UACCG___________CUGA___C__U_______GCCA_________CACG________ACCCA...CGG-3'\n______________GCUGCGCCAAC____ACU_GG_GAAGUCU____UUGCG_CGU_____GUUAUGA\n______________:||||||||||____||:_||_|||:|||____:||||_|||_____:||||||\n______________UGACGCGGUUG____UGG_CC_CUUUAGA____GACGC_GCA_____UAAUACU\n3'-UUU...GCUUA__________________U__________ACC______G___UUUAA_______ACUCA...GUG-5'\n_____________|______________________________________________________|\n_____________87_____________________________________________________38\n |
271 -- 277 |
39 -- 45 |
-47.4338 kcal/mol |
15.6024 kcal/mol |
16.9994 kcal/mol |
225 278@LB@ | |@LB@5'-GUG...UACCG CUGA C U GCCA CACG ACCCA...CGG-3'@LB@ GCUGCGCCAAC ACU GG GAAGUCU UUGCG CGU GUUAUGA@LB@ :|||||||||| ||: || |||:||| :|||| ||| :||||||@LB@ UGACGCGGUUG UGG CC CUUUAGA GACGC GCA UAAUACU@LB@3'-UUU...GCUUA U ACC G UUUAA ACUCA...GUG-5'@LB@ | |@LB@ 87 38@LB@@LB@@LB@Energy -14.83 kcal/mol@LB@Hybridization Energy -47.4338 kcal/mol@LB@Unfolding Energy - mRNA 15.6024 kcal/mol@LB@Unfolding Energy - sRNA 16.9994 kcal/mol@LB@@LB@Position - mRNA 226 -- 277@LB@Position - sRNA 39 -- 86@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 118 |
0.006444 |
0.1913 |
b0189 |
rof |
-9.63 |
0.163299 |
226 -- 241 |
29 -- 45 |
modulator of Rho-dependent transcription termination |
|
_____________225_______________242\n_____________|_________________|\n5'-AGG...AAUCA_________________UAAUC...GCG-3'\n______________AUUGUGAUGA_UUACGA\n______________|||:||||||_||||:|\n______________UAAUACUACU_AAUGUU\n3'-UUU...UUUAA__________C______CCCGU...GUG-5'\n_____________|_________________|\n_____________46________________28\n |
229 -- 235 |
36 -- 42 |
-15.4032 kcal/mol |
3.82623 kcal/mol |
1.94966 kcal/mol |
225 242@LB@ | |@LB@5'-AGG...AAUCA UAAUC...GCG-3'@LB@ AUUGUGAUGA UUACGA@LB@ |||:|||||| ||||:|@LB@ UAAUACUACU AAUGUU@LB@3'-UUU...UUUAA C CCCGU...GUG-5'@LB@ | |@LB@ 46 28@LB@@LB@@LB@Energy -9.63 kcal/mol@LB@Hybridization Energy -15.4032 kcal/mol@LB@Unfolding Energy - mRNA 3.82623 kcal/mol@LB@Unfolding Energy - sRNA 1.94966 kcal/mol@LB@@LB@Position - mRNA 226 -- 241@LB@Position - sRNA 29 -- 45@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 36 -- 42@LB@ |
