| 174 |
0.01024 |
0.2071 |
b0889 |
lrp |
-11.01 |
0.089440 |
79 -- 112 |
38 -- 78 |
leucine-responsive global transcriptional regulator |
|
_____________78________________________________________113\n_____________|_________________________________________|\n5'-GUG...CCGUA_________C______________________CU_C_____UUCGG...AGC-3'\n______________GAC_CCAGG___AUU___GC_GCGCCGUGAAU__U_AUGAU\n______________:||_|||||___||:___||_|||||||:|||__|_|||||\n______________UUG_GGUCC___UAG___CG_CGCGGCAUUUA__A_UACUA\n3'-UUU...CGCGG___U_____CUU___AAC__A___________AU_A_____CUCAA...GUG-5'\n_____________|_________________________________________|\n_____________79________________________________________37\n |
96 -- 102 |
48 -- 54 |
-32.0055 kcal/mol |
11.6338 kcal/mol |
9.36467 kcal/mol |
78 113@LB@ | |@LB@5'-GUG...CCGUA C CU C UUCGG...AGC-3'@LB@ GAC CCAGG AUU GC GCGCCGUGAAU U AUGAU@LB@ :|| ||||| ||: || |||||||:||| | |||||@LB@ UUG GGUCC UAG CG CGCGGCAUUUA A UACUA@LB@3'-UUU...CGCGG U CUU AAC A AU A CUCAA...GUG-5'@LB@ | |@LB@ 79 37@LB@@LB@@LB@Energy -11.01 kcal/mol@LB@Hybridization Energy -32.0055 kcal/mol@LB@Unfolding Energy - mRNA 11.6338 kcal/mol@LB@Unfolding Energy - sRNA 9.36467 kcal/mol@LB@@LB@Position - mRNA 79 -- 112@LB@Position - sRNA 38 -- 78@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 127 |
0.007097 |
0.1961 |
b4065 |
yjcE |
-10.62 |
0.105957 |
81 -- 91 |
51 -- 62 |
putative cation/proton antiporter |
|
_____________80___________92\n_____________|____________|\n5'-UAU...GGCAA____________UUUUA...UGC-3'\n______________UGGCUGC_CCGU\n______________|||||||_||||\n______________ACCGACG_GGCA\n3'-UUU...UUAGA_______C____UUUAA...GUG-5'\n_____________|____________|\n_____________63___________50\n |
81 -- 87 |
56 -- 62 |
-18.8543 kcal/mol |
3.34811 kcal/mol |
4.8826 kcal/mol |
80 92@LB@ | |@LB@5'-UAU...GGCAA UUUUA...UGC-3'@LB@ UGGCUGC CCGU@LB@ ||||||| ||||@LB@ ACCGACG GGCA@LB@3'-UUU...UUAGA C UUUAA...GUG-5'@LB@ | |@LB@ 63 50@LB@@LB@@LB@Energy -10.62 kcal/mol@LB@Hybridization Energy -18.8543 kcal/mol@LB@Unfolding Energy - mRNA 3.34811 kcal/mol@LB@Unfolding Energy - sRNA 4.8826 kcal/mol@LB@@LB@Position - mRNA 81 -- 91@LB@Position - sRNA 51 -- 62@LB@Position Seed - mRNA 81 -- 87@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 191 |
0.01171 |
0.2159 |
b4221 |
tamB |
-9.06 |
0.207346 |
81 -- 101 |
52 -- 76 |
translocation and assembly module for autotransporter export inner membrane subunit |
|
_____________80_________________________102\n_____________|__________________________|\n5'-ACC...ACCGG__________________G_______GGAAU...AUC-3'\n______________UACCGGGG___UC__GGC_UGCGCUG\n______________:|||:|||___||__|||_|||||:|\n______________GUGGUCCC___AG__CCG_ACGCGGC\n3'-UUU...CGGUU________UUU__AA___________AUUUA...GUG-5'\n_____________|__________________________|\n_____________77_________________________51\n |
95 -- 101 |
52 -- 58 |
-29.4253 kcal/mol |
11.0996 kcal/mol |
9.26585 kcal/mol |
80 102@LB@ | |@LB@5'-ACC...ACCGG G GGAAU...AUC-3'@LB@ UACCGGGG UC GGC UGCGCUG@LB@ :|||:||| || ||| |||||:|@LB@ GUGGUCCC AG CCG ACGCGGC@LB@3'-UUU...CGGUU UUU AA AUUUA...GUG-5'@LB@ | |@LB@ 77 51@LB@@LB@@LB@Energy -9.06 kcal/mol@LB@Hybridization Energy -29.4253 kcal/mol@LB@Unfolding Energy - mRNA 11.0996 kcal/mol@LB@Unfolding Energy - sRNA 9.26585 kcal/mol@LB@@LB@Position - mRNA 81 -- 101@LB@Position - sRNA 52 -- 76@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 166 |
0.009748 |
0.2068 |
b1261 |
trpB |
-12.89 |
0.038353 |
88 -- 97 |
52 -- 61 |
tryptophan synthase beta subunit |
|
_____________87_________98\n_____________|__________|\n5'-UGG...AAACC__________GACUU...UCA-3'\n______________GGCUGCGCCG\n______________||||||||||\n______________CCGACGCGGC\n3'-UUU...UAGAA__________AUUUA...GUG-5'\n_____________|__________|\n_____________62_________51\n |
91 -- 97 |
52 -- 58 |
-23.3299 kcal/mol |
5.56351 kcal/mol |
4.87533 kcal/mol |
87 98@LB@ | |@LB@5'-UGG...AAACC GACUU...UCA-3'@LB@ GGCUGCGCCG@LB@ ||||||||||@LB@ CCGACGCGGC@LB@3'-UUU...UAGAA AUUUA...GUG-5'@LB@ | |@LB@ 62 51@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -23.3299 kcal/mol@LB@Unfolding Energy - mRNA 5.56351 kcal/mol@LB@Unfolding Energy - sRNA 4.87533 kcal/mol@LB@@LB@Position - mRNA 88 -- 97@LB@Position - sRNA 52 -- 61@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 197 |
0.01211 |
0.2164 |
b0495 |
ybbA |
-7.53 |
0.379415 |
88 -- 97 |
1 -- 10 |
putative ABC transporter ATPase |
|
_____________87_________98\n_____________|__________|\n5'-GCC...CAGGC__________UGGCA...UCA-3'\n______________CAGGCCGCGC\n______________||||||||:|\n______________GUCCGGCGUG\n3'-UUU...AAAAA__________-5'\n_____________|_________|\n_____________11________1\n |
91 -- 97 |
1 -- 7 |
-21.6304 kcal/mol |
8.71663 kcal/mol |
5.44172 kcal/mol |
87 98@LB@ | |@LB@5'-GCC...CAGGC UGGCA...UCA-3'@LB@ CAGGCCGCGC@LB@ ||||||||:|@LB@ GUCCGGCGUG@LB@3'-UUU...AAAAA -5'@LB@ | |@LB@ 11 1@LB@@LB@@LB@Energy -7.53 kcal/mol@LB@Hybridization Energy -21.6304 kcal/mol@LB@Unfolding Energy - mRNA 8.71663 kcal/mol@LB@Unfolding Energy - sRNA 5.44172 kcal/mol@LB@@LB@Position - mRNA 88 -- 97@LB@Position - sRNA 1 -- 10@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 6 |
0.0001378 |
0.08054 |
b3860 |
dsbA |
-12.69 |
0.042007 |
89 -- 111 |
55 -- 75 |
periplasmic protein disulfide isomerase I |
|
_____________88______________________112\n_____________|_______________________|\n5'-UUU...GGUUA_______A_____AC________ACAGA...AAC-3'\n______________ACCGGGG_AGAUU__UGGCUGCG\n______________|||:|||_|:||:__||||||||\n______________UGGUCCC_UUUAG__ACCGACGC\n3'-UUU...GGUUG_____________A_________GGCAU...GUG-5'\n_____________|_______________________|\n_____________76______________________54\n |
105 -- 111 |
55 -- 61 |
-30.5184 kcal/mol |
9.58616 kcal/mol |
8.24199 kcal/mol |
88 112@LB@ | |@LB@5'-UUU...GGUUA A AC ACAGA...AAC-3'@LB@ ACCGGGG AGAUU UGGCUGCG@LB@ |||:||| |:||: ||||||||@LB@ UGGUCCC UUUAG ACCGACGC@LB@3'-UUU...GGUUG A GGCAU...GUG-5'@LB@ | |@LB@ 76 54@LB@@LB@@LB@Energy -12.69 kcal/mol@LB@Hybridization Energy -30.5184 kcal/mol@LB@Unfolding Energy - mRNA 9.58616 kcal/mol@LB@Unfolding Energy - sRNA 8.24199 kcal/mol@LB@@LB@Position - mRNA 89 -- 111@LB@Position - sRNA 55 -- 75@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 128 |
0.007127 |
0.1961 |
b0696 |
kdpC |
-9.30 |
0.187437 |
90 -- 106 |
44 -- 60 |
potassium translocating ATPase subunit C |
|
_____________89________________107\n_____________|_________________|\n5'-GCG...GCCAU____________C____GGAUU...GGU-3'\n______________GUUGCGCCGUAA_UUAU\n______________|:||||||||||_||||\n______________CGACGCGGCAUU_AAUA\n3'-UUU...AGAAC____________U____AUACU...GUG-5'\n_____________|_________________|\n_____________61________________43\n |
95 -- 101 |
49 -- 55 |
-22.6138 kcal/mol |
6.57247 kcal/mol |
6.74006 kcal/mol |
89 107@LB@ | |@LB@5'-GCG...GCCAU C GGAUU...GGU-3'@LB@ GUUGCGCCGUAA UUAU@LB@ |:|||||||||| ||||@LB@ CGACGCGGCAUU AAUA@LB@3'-UUU...AGAAC U AUACU...GUG-5'@LB@ | |@LB@ 61 43@LB@@LB@@LB@Energy -9.30 kcal/mol@LB@Hybridization Energy -22.6138 kcal/mol@LB@Unfolding Energy - mRNA 6.57247 kcal/mol@LB@Unfolding Energy - sRNA 6.74006 kcal/mol@LB@@LB@Position - mRNA 90 -- 106@LB@Position - sRNA 44 -- 60@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 96 |
0.005105 |
0.1855 |
b0870 |
ltaE |
-12.99 |
0.036706 |
93 -- 116 |
68 -- 88 |
L-allo-threonine aldolase PLP-dependent |
|
_____________92_______________________117\n_____________|________________________|\n5'-GUC...UGUAU_________G___U______C___CGCGG...ACC-3'\n______________AUGCUGCGC_CAA_CAUCAG_GGA\n______________||:||||||_|||_||:|||_|||\n______________UAUGACGCG_GUU_GUGGUC_CCU\n3'-UUU...GCGCU________________________UUAGA...GUG-5'\n_____________|________________________|\n_____________89_______________________67\n |
95 -- 101 |
80 -- 86 |
-29.0922 kcal/mol |
8.72289 kcal/mol |
7.38144 kcal/mol |
92 117@LB@ | |@LB@5'-GUC...UGUAU G U C CGCGG...ACC-3'@LB@ AUGCUGCGC CAA CAUCAG GGA@LB@ ||:|||||| ||| ||:||| |||@LB@ UAUGACGCG GUU GUGGUC CCU@LB@3'-UUU...GCGCU UUAGA...GUG-5'@LB@ | |@LB@ 89 67@LB@@LB@@LB@Energy -12.99 kcal/mol@LB@Hybridization Energy -29.0922 kcal/mol@LB@Unfolding Energy - mRNA 8.72289 kcal/mol@LB@Unfolding Energy - sRNA 7.38144 kcal/mol@LB@@LB@Position - mRNA 93 -- 116@LB@Position - sRNA 68 -- 88@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 169 |
0.01004 |
0.2071 |
b2384 |
ypdE |
-12.38 |
0.048278 |
93 -- 137 |
31 -- 75 |
aminopeptidase |
b4305 b3898 |
_____________92______________________________________________138\n_____________|_______________________________________________|\n5'-AUU...UAUUU_______C__GGG____G_____AUCG___A_______C________CCCGC...UGC-3'\n______________GCCAGGG_AA____GGC_UGCGC____AAG_UGUUGUG_UG_GUUAC\n______________:||||||_||____|||_|||||____||:_|:||:||_||_|||||\n______________UGGUCCC_UU____CCG_ACGCG____UUU_AUAAUAC_AC_CAAUG\n3'-UUU...GGUUG_______U__AGAA_________GCA____A_______U__U_____UUCCC...GUG-5'\n_____________|_______________________________________________|\n_____________76______________________________________________30\n |
93 -- 99 |
69 -- 75 |
-40.1479 kcal/mol |
18.4667 kcal/mol |
9.29858 kcal/mol |
92 138@LB@ | |@LB@5'-AUU...UAUUU C GGG G AUCG A C CCCGC...UGC-3'@LB@ GCCAGGG AA GGC UGCGC AAG UGUUGUG UG GUUAC@LB@ :|||||| || ||| ||||| ||: |:||:|| || |||||@LB@ UGGUCCC UU CCG ACGCG UUU AUAAUAC AC CAAUG@LB@3'-UUU...GGUUG U AGAA GCA A U U UUCCC...GUG-5'@LB@ | |@LB@ 76 30@LB@@LB@@LB@Energy -12.38 kcal/mol@LB@Hybridization Energy -40.1479 kcal/mol@LB@Unfolding Energy - mRNA 18.4667 kcal/mol@LB@Unfolding Energy - sRNA 9.29858 kcal/mol@LB@@LB@Position - mRNA 93 -- 137@LB@Position - sRNA 31 -- 75@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 12 |
0.0004488 |
0.1198 |
b3133 |
agaV |
-20.63 |
0.001136 |
94 -- 118 |
64 -- 86 |
N-acetylgalactosamine-specific enzyme IIB component of PTS |
|
_____________93________________________119\n_____________|_________________________|\n5'-UCA...GGCGA_____A__________C_____C__AUUAU...UAG-3'\n______________GCUGC_GCCAACGCCA_GGGAA_UC\n______________:||||_||||||:|||_|||||_||\n______________UGACG_CGGUUGUGGU_CCCUU_AG\n3'-UUU...GCUUA______________________U__AACCG...GUG-5'\n_____________|_________________________|\n_____________87________________________63\n |
103 -- 109 |
72 -- 78 |
-36.2121 kcal/mol |
8.19626 kcal/mol |
7.38435 kcal/mol |
93 119@LB@ | |@LB@5'-UCA...GGCGA A C C AUUAU...UAG-3'@LB@ GCUGC GCCAACGCCA GGGAA UC@LB@ :|||| ||||||:||| ||||| ||@LB@ UGACG CGGUUGUGGU CCCUU AG@LB@3'-UUU...GCUUA U AACCG...GUG-5'@LB@ | |@LB@ 87 63@LB@@LB@@LB@Energy -20.63 kcal/mol@LB@Hybridization Energy -36.2121 kcal/mol@LB@Unfolding Energy - mRNA 8.19626 kcal/mol@LB@Unfolding Energy - sRNA 7.38435 kcal/mol@LB@@LB@Position - mRNA 94 -- 118@LB@Position - sRNA 64 -- 86@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 72 -- 78@LB@ |
