| 40 |
0.002113 |
0.1727 |
b2314 |
dedD |
-12.04 |
0.056230 |
10 -- 25 |
1 -- 19 |
membrane-anchored periplasmic protein involved in septation |
|
_____________9___________________26\n_____________|___________________|\n5'-UUG...GCGCC____GAA____________GGUGC...AUU-3'\n______________ACUG______GGGCCGCGC\n______________||||______:||||||:|\n______________UGAC______UCCGGCGUG\n3'-UUU...UGUCG____AAAAAG_________-5'\n_____________|__________________|\n_____________20_________________1\n |
19 -- 25 |
1 -- 7 |
-21.4331 kcal/mol |
3.12458 kcal/mol |
6.26391 kcal/mol |
9 26@LB@ | |@LB@5'-UUG...GCGCC GAA GGUGC...AUU-3'@LB@ ACUG GGGCCGCGC@LB@ |||| :||||||:|@LB@ UGAC UCCGGCGUG@LB@3'-UUU...UGUCG AAAAAG -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -21.4331 kcal/mol@LB@Unfolding Energy - mRNA 3.12458 kcal/mol@LB@Unfolding Energy - sRNA 6.26391 kcal/mol@LB@@LB@Position - mRNA 10 -- 25@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 115 |
0.006085 |
0.1855 |
b3030 |
parE |
-11.34 |
0.077071 |
10 -- 31 |
65 -- 86 |
DNA topoisomerase IV subunit B |
|
_____________9______________________32\n_____________|______________________|\n5'-UUU...AUCUG_____UG_____GAC_______GAAGU...ACC-3'\n______________GCUGC__CAACA___GGGAGAU\n______________:||||__|||||___||||:||\n______________UGACG__GUUGU___CCCUUUA\n3'-UUU...GCUUA_____CG_____GGU_______GAACC...GUG-5'\n_____________|______________________|\n_____________87_____________________64\n |
25 -- 31 |
65 -- 71 |
-24.4704 kcal/mol |
5.74549 kcal/mol |
7.38332 kcal/mol |
9 32@LB@ | |@LB@5'-UUU...AUCUG UG GAC GAAGU...ACC-3'@LB@ GCUGC CAACA GGGAGAU@LB@ :|||| ||||| ||||:||@LB@ UGACG GUUGU CCCUUUA@LB@3'-UUU...GCUUA CG GGU GAACC...GUG-5'@LB@ | |@LB@ 87 64@LB@@LB@@LB@Energy -11.34 kcal/mol@LB@Hybridization Energy -24.4704 kcal/mol@LB@Unfolding Energy - mRNA 5.74549 kcal/mol@LB@Unfolding Energy - sRNA 7.38332 kcal/mol@LB@@LB@Position - mRNA 10 -- 31@LB@Position - sRNA 65 -- 86@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 30 |
0.001614 |
0.1727 |
b3607 |
cysE |
-13.31 |
0.031682 |
13 -- 32 |
63 -- 81 |
serine acetyltransferase |
|
_____________12___________________33\n_____________|____________________|\n5'-CGG...GAAAU______A____A________AUCAA...CGA-3'\n______________GCCAAU_ACCG_GGAAAUUU\n______________|||||:_|||:_||||||:|\n______________CGGUUG_UGGU_CCUUUAGA\n3'-UUU...UGACG___________C________ACCGA...GUG-5'\n_____________|____________________|\n_____________82___________________62\n |
26 -- 32 |
63 -- 69 |
-21.8966 kcal/mol |
1.53041 kcal/mol |
7.0543 kcal/mol |
12 33@LB@ | |@LB@5'-CGG...GAAAU A A AUCAA...CGA-3'@LB@ GCCAAU ACCG GGAAAUUU@LB@ |||||: |||: ||||||:|@LB@ CGGUUG UGGU CCUUUAGA@LB@3'-UUU...UGACG C ACCGA...GUG-5'@LB@ | |@LB@ 82 62@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -21.8966 kcal/mol@LB@Unfolding Energy - mRNA 1.53041 kcal/mol@LB@Unfolding Energy - sRNA 7.0543 kcal/mol@LB@@LB@Position - mRNA 13 -- 32@LB@Position - sRNA 63 -- 81@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 31 |
0.001682 |
0.1727 |
b1887 |
cheW |
-12.93 |
0.037697 |
13 -- 28 |
70 -- 86 |
purine-binding chemotaxis protein |
|
_____________12________________29\n_____________|_________________|\n5'-GUG...AAUUA_________________UUGUG...UCC-3'\n______________AUUG_GUCAACACCAGG\n______________|:||_|:||||||||||\n______________UGAC_CGGUUGUGGUCC\n3'-UUU...GCUUA____G____________CUUUA...GUG-5'\n_____________|_________________|\n_____________87________________69\n |
22 -- 28 |
70 -- 76 |
-24.746 kcal/mol |
4.53921 kcal/mol |
7.27772 kcal/mol |
12 29@LB@ | |@LB@5'-GUG...AAUUA UUGUG...UCC-3'@LB@ AUUG GUCAACACCAGG@LB@ |:|| |:||||||||||@LB@ UGAC CGGUUGUGGUCC@LB@3'-UUU...GCUUA G CUUUA...GUG-5'@LB@ | |@LB@ 87 69@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -24.746 kcal/mol@LB@Unfolding Energy - mRNA 4.53921 kcal/mol@LB@Unfolding Energy - sRNA 7.27772 kcal/mol@LB@@LB@Position - mRNA 13 -- 28@LB@Position - sRNA 70 -- 86@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 120 |
0.006631 |
0.1913 |
b0825 |
fsaA |
-14.24 |
0.020734 |
15 -- 76 |
31 -- 86 |
fructose-6-phosphate aldolase 1 |
b3946 |
_____________14_____________________________________________________________77\n_____________|______________________________________________________________|\n5'-CUU...AUACG__C____G__________CC___A___G_CGAGUA______AAU____AAAAUCAU______CUCUC...CCG-3'\n______________AC_GUGC_GAUACCGGGG__AUC_UGG_U______GCGCUG___AUUG________AGUUGC\n______________||_|:||_:|:|||:|||__|||_|||_|______||||:|___|||:________||||:|\n______________UG_CGCG_UUGUGGUCCC__UAG_ACC_A______CGCGGC___UAAU________UCAAUG\n3'-UUU...GCUUA__A____G__________UU___A___G_____________AUU____AAUACUAC______UUCCC...GUG-5'\n_____________|______________________________________________________________|\n_____________87_____________________________________________________________30\n |
26 -- 32 |
69 -- 75 |
-46.4097 kcal/mol |
15.1018 kcal/mol |
17.0646 kcal/mol |
14 77@LB@ | |@LB@5'-CUU...AUACG C G CC A G CGAGUA AAU AAAAUCAU CUCUC...CCG-3'@LB@ AC GUGC GAUACCGGGG AUC UGG U GCGCUG AUUG AGUUGC@LB@ || |:|| :|:|||:||| ||| ||| | ||||:| |||: ||||:|@LB@ UG CGCG UUGUGGUCCC UAG ACC A CGCGGC UAAU UCAAUG@LB@3'-UUU...GCUUA A G UU A G AUU AAUACUAC UUCCC...GUG-5'@LB@ | |@LB@ 87 30@LB@@LB@@LB@Energy -14.24 kcal/mol@LB@Hybridization Energy -46.4097 kcal/mol@LB@Unfolding Energy - mRNA 15.1018 kcal/mol@LB@Unfolding Energy - sRNA 17.0646 kcal/mol@LB@@LB@Position - mRNA 15 -- 76@LB@Position - sRNA 31 -- 86@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 17 |
0.0008046 |
0.1666 |
b0590 |
fepD |
-14.87 |
0.015550 |
17 -- 43 |
70 -- 94 |
ferrienterobactin ABC transporter permease |
|
_____________16__________________________44\n_____________|___________________________|\n5'-AAU...AACGA___AG___________GA_________UGCGU...AAU-3'\n______________GCG__GAAUACUGCGC__AACGCCGGG\n______________|||__|||||||||||__|||:||:||\n______________CGC__CUUAUGACGCG__UUGUGGUCC\n3'-UUU...CCCCA___G____________G__________CUUUA...GUG-5'\n_____________|___________________________|\n_____________95__________________________69\n |
37 -- 43 |
70 -- 76 |
-38.1858 kcal/mol |
10.2318 kcal/mol |
13.036 kcal/mol |
16 44@LB@ | |@LB@5'-AAU...AACGA AG GA UGCGU...AAU-3'@LB@ GCG GAAUACUGCGC AACGCCGGG@LB@ ||| ||||||||||| |||:||:||@LB@ CGC CUUAUGACGCG UUGUGGUCC@LB@3'-UUU...CCCCA G G CUUUA...GUG-5'@LB@ | |@LB@ 95 69@LB@@LB@@LB@Energy -14.87 kcal/mol@LB@Hybridization Energy -38.1858 kcal/mol@LB@Unfolding Energy - mRNA 10.2318 kcal/mol@LB@Unfolding Energy - sRNA 13.036 kcal/mol@LB@@LB@Position - mRNA 17 -- 43@LB@Position - sRNA 70 -- 94@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 66 |
0.003275 |
0.1727 |
b0394 |
mak |
-8.12 |
0.303293 |
18 -- 92 |
5 -- 77 |
manno(fructo)kinase |
|
_____________17_______________________________________________________________________________93\n_____________|________________________________________________________________________________|\n5'-GUU...CUUCU____G___C_______CGC____AA_A_G_____CC____AAUUUUUGA_______________GAUAA____CAC____UUGUC...GUG-3'\n______________GCAC_CAG_GAAAUCU___GGCU__G_C_GUAAA__AUUA_________AC_____CACAGCAU_____UUUC___GGCC\n______________:|||_|||_|||||||___||||__|_|_|||||__||||_________||_____|||||||:_____||||___||||\n______________UGUG_GUC_CUUUAGA___CCGA__C_G_CAUUU__UAAU_________UG_____GUGUCGUG_____AAAG___CCGG\n3'-UUU...GCGGU________C_______A______CG___G_____AA____ACUACUCAA__UUCCC________ACAA_____U______CGUG-5'\n_____________|________________________________________________________________________________|\n_____________78_______________________________________________________________________________4\n |
70 -- 76 |
18 -- 24 |
-46.4183 kcal/mol |
15.5654 kcal/mol |
22.7286 kcal/mol |
17 93@LB@ | |@LB@5'-GUU...CUUCU G C CGC AA A G CC AAUUUUUGA GAUAA CAC UUGUC...GUG-3'@LB@ GCAC CAG GAAAUCU GGCU G C GUAAA AUUA AC CACAGCAU UUUC GGCC@LB@ :||| ||| ||||||| |||| | | ||||| |||| || |||||||: |||| ||||@LB@ UGUG GUC CUUUAGA CCGA C G CAUUU UAAU UG GUGUCGUG AAAG CCGG@LB@3'-UUU...GCGGU C A CG G AA ACUACUCAA UUCCC ACAA U CGUG-5'@LB@ | |@LB@ 78 4@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -46.4183 kcal/mol@LB@Unfolding Energy - mRNA 15.5654 kcal/mol@LB@Unfolding Energy - sRNA 22.7286 kcal/mol@LB@@LB@Position - mRNA 18 -- 92@LB@Position - sRNA 5 -- 77@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 44 |
0.002208 |
0.1727 |
b1859 |
znuB |
-7.63 |
0.365449 |
19 -- 38 |
72 -- 88 |
zinc ABC transporter permease |
|
_____________18___________________39\n_____________|____________________|\n5'-AUG...AUGAA__________UGAAU_____CAUUU...AUU-3'\n______________GUGCUGUGCC_____CACCA\n______________:|:|||:|||_____|||||\n______________UAUGACGCGG_____GUGGU\n3'-UUU...GCGCU__________UU________CCCUU...GUG-5'\n_____________|____________________|\n_____________89___________________71\n |
22 -- 28 |
79 -- 85 |
-22.3137 kcal/mol |
7.44481 kcal/mol |
7.24148 kcal/mol |
18 39@LB@ | |@LB@5'-AUG...AUGAA UGAAU CAUUU...AUU-3'@LB@ GUGCUGUGCC CACCA@LB@ :|:|||:||| |||||@LB@ UAUGACGCGG GUGGU@LB@3'-UUU...GCGCU UU CCCUU...GUG-5'@LB@ | |@LB@ 89 71@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -22.3137 kcal/mol@LB@Unfolding Energy - mRNA 7.44481 kcal/mol@LB@Unfolding Energy - sRNA 7.24148 kcal/mol@LB@@LB@Position - mRNA 19 -- 38@LB@Position - sRNA 72 -- 88@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 172 |
0.0102 |
0.2071 |
b1383 |
ydbL |
-9.96 |
0.141752 |
21 -- 31 |
52 -- 62 |
DUF1318 family protein |
|
_____________20__________32\n_____________|___________|\n5'-AAA...UUUAC___________ACGUC...UAG-3'\n______________UGGCUGCGUUG\n______________||||||||::|\n______________ACCGACGCGGC\n3'-UUU...UUAGA___________AUUUA...GUG-5'\n_____________|___________|\n_____________63__________51\n |
25 -- 31 |
52 -- 58 |
-19.6889 kcal/mol |
4.85225 kcal/mol |
4.8804 kcal/mol |
20 32@LB@ | |@LB@5'-AAA...UUUAC ACGUC...UAG-3'@LB@ UGGCUGCGUUG@LB@ ||||||||::|@LB@ ACCGACGCGGC@LB@3'-UUU...UUAGA AUUUA...GUG-5'@LB@ | |@LB@ 63 51@LB@@LB@@LB@Energy -9.96 kcal/mol@LB@Hybridization Energy -19.6889 kcal/mol@LB@Unfolding Energy - mRNA 4.85225 kcal/mol@LB@Unfolding Energy - sRNA 4.8804 kcal/mol@LB@@LB@Position - mRNA 21 -- 31@LB@Position - sRNA 52 -- 62@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 42 |
0.002147 |
0.1727 |
b0082 |
rsmH |
-13.18 |
0.033634 |
23 -- 49 |
70 -- 94 |
16S rRNA m(4)C1402 methyltransferase SAM-dependent |
|
_____________22__________________________50\n_____________|___________________________|\n5'-UGG...UAAUC____C_________G____AU______CUGAC...GUC-3'\n______________GCGC_AGUACUGCG_CAAC__GCCGGG\n______________||||_|:|||||||_||||__:||:||\n______________CGCG_UUAUGACGC_GUUG__UGGUCC\n3'-UUU...CCCCA____C_________G____________CUUUA...GUG-5'\n_____________|___________________________|\n_____________95__________________________69\n |
30 -- 36 |
81 -- 87 |
-36.7334 kcal/mol |
10.4772 kcal/mol |
13.036 kcal/mol |
22 50@LB@ | |@LB@5'-UGG...UAAUC C G AU CUGAC...GUC-3'@LB@ GCGC AGUACUGCG CAAC GCCGGG@LB@ |||| |:||||||| |||| :||:||@LB@ CGCG UUAUGACGC GUUG UGGUCC@LB@3'-UUU...CCCCA C G CUUUA...GUG-5'@LB@ | |@LB@ 95 69@LB@@LB@@LB@Energy -13.18 kcal/mol@LB@Hybridization Energy -36.7334 kcal/mol@LB@Unfolding Energy - mRNA 10.4772 kcal/mol@LB@Unfolding Energy - sRNA 13.036 kcal/mol@LB@@LB@Position - mRNA 23 -- 49@LB@Position - sRNA 70 -- 94@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 81 -- 87@LB@ |
