143 |
0.008308 |
0.2033 |
b2049 |
cpsB |
-11.81 |
0.062535 |
184 -- 242 |
25 -- 78 |
mannose-1-phosphate guanyltransferase |
|
_____________183_______________________________________________________________243\n_____________|_________________________________________________________________|\n5'-ACA...UAAAU____U_______U____A_______A________CUCUAUCCA__________________U___UCCGG...GCC-3'\n______________GAUA_UCGGGGA_AAUU_UGGC_GC_GUCG_AAA_________GUUGUGAUG____GCAGG_GGC\n______________:|:|_:|:||||_|||:_||||_||_|:||_|||_________:||:|||||____:||:|_|||\n______________UUGU_GGUCCCU_UUAG_ACCG_CG_CGGC_UUU_________UAAUACUAC____UGUUC_CCG\n3'-UUU...CGCGG_________________A____A_______A___AA________________UCAA_________UGUCG...GUG-5'\n_____________|_________________________________________________________________|\n_____________79________________________________________________________________24\n |
227 -- 233 |
37 -- 43 |
-41.0645 kcal/mol |
15.3492 kcal/mol |
13.8987 kcal/mol |
183 243@LB@ | |@LB@5'-ACA...UAAAU U U A A CUCUAUCCA U UCCGG...GCC-3'@LB@ GAUA UCGGGGA AAUU UGGC GC GUCG AAA GUUGUGAUG GCAGG GGC@LB@ :|:| :|:|||| |||: |||| || |:|| ||| :||:||||| :||:| |||@LB@ UUGU GGUCCCU UUAG ACCG CG CGGC UUU UAAUACUAC UGUUC CCG@LB@3'-UUU...CGCGG A A A AA UCAA UGUCG...GUG-5'@LB@ | |@LB@ 79 24@LB@@LB@@LB@Energy -11.81 kcal/mol@LB@Hybridization Energy -41.0645 kcal/mol@LB@Unfolding Energy - mRNA 15.3492 kcal/mol@LB@Unfolding Energy - sRNA 13.8987 kcal/mol@LB@@LB@Position - mRNA 184 -- 242@LB@Position - sRNA 25 -- 78@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 37 -- 43@LB@ |
153 |
0.009069 |
0.2059 |
b3529 |
yhjK |
-8.15 |
0.299018 |
186 -- 212 |
47 -- 74 |
cyclic-di-GMP phosphodiesterase |
|
_____________185__________________________213\n_____________|____________________________|\n5'-AGC...GAUUU_________GACAAU_____________CGCUC...AUC-3'\n______________CCGGGGGGA______UUGCG_CGUAAGU\n______________||:|||::|______:||||_|||||:|\n______________GGUCCCUUU______GACGC_GCAUUUA\n3'-UUU...GUUGU_________AGAACC_____G_______AUAAU...GUG-5'\n_____________|____________________________|\n_____________75___________________________46\n |
187 -- 193 |
67 -- 73 |
-27.1977 kcal/mol |
10.2409 kcal/mol |
8.80319 kcal/mol |
185 213@LB@ | |@LB@5'-AGC...GAUUU GACAAU CGCUC...AUC-3'@LB@ CCGGGGGGA UUGCG CGUAAGU@LB@ ||:|||::| :|||| |||||:|@LB@ GGUCCCUUU GACGC GCAUUUA@LB@3'-UUU...GUUGU AGAACC G AUAAU...GUG-5'@LB@ | |@LB@ 75 46@LB@@LB@@LB@Energy -8.15 kcal/mol@LB@Hybridization Energy -27.1977 kcal/mol@LB@Unfolding Energy - mRNA 10.2409 kcal/mol@LB@Unfolding Energy - sRNA 8.80319 kcal/mol@LB@@LB@Position - mRNA 186 -- 212@LB@Position - sRNA 47 -- 74@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 67 -- 73@LB@ |
164 |
0.009677 |
0.2068 |
b1956 |
yedQ |
-11.74 |
0.064514 |
187 -- 209 |
18 -- 41 |
putative membrane-anchored diguanylate cyclase |
|
_____________186______________________210\n_____________|________________________|\n5'-GAG...CAGGU________CGUC____________GAGAC...UAU-3'\n______________UGG_GAGU____AGGGUGCAGCAC\n______________||:_||||____||||::||||||\n______________ACU_CUCA____UCCCGUGUCGUG\n3'-UUU...AUAAU___A____AUGU____________ACAAA...GUG-5'\n_____________|________________________|\n_____________42_______________________17\n |
203 -- 209 |
18 -- 24 |
-27.1151 kcal/mol |
6.50018 kcal/mol |
8.87585 kcal/mol |
186 210@LB@ | |@LB@5'-GAG...CAGGU CGUC GAGAC...UAU-3'@LB@ UGG GAGU AGGGUGCAGCAC@LB@ ||: |||| ||||::||||||@LB@ ACU CUCA UCCCGUGUCGUG@LB@3'-UUU...AUAAU A AUGU ACAAA...GUG-5'@LB@ | |@LB@ 42 17@LB@@LB@@LB@Energy -11.74 kcal/mol@LB@Hybridization Energy -27.1151 kcal/mol@LB@Unfolding Energy - mRNA 6.50018 kcal/mol@LB@Unfolding Energy - sRNA 8.87585 kcal/mol@LB@@LB@Position - mRNA 187 -- 209@LB@Position - sRNA 18 -- 41@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 18 -- 24@LB@ |
198 |
0.01217 |
0.2164 |
b1236 |
galU |
-11.62 |
0.068156 |
187 -- 208 |
56 -- 74 |
glucose-1-phosphate uridylyltransferase |
|
_____________186____________________209\n_____________|______________________|\n5'-CAA...ACAGU_____A______AAA_______CAUUA...UGC-3'\n______________CCAGG_GAAUUU___UGGCUGC\n______________|||||_:|||:|___|||||||\n______________GGUCC_UUUAGA___ACCGACG\n3'-UUU...GUUGU_____C________________CGGCA...GUG-5'\n_____________|______________________|\n_____________75_____________________55\n |
202 -- 208 |
56 -- 62 |
-24.2568 kcal/mol |
4.50323 kcal/mol |
8.13729 kcal/mol |
186 209@LB@ | |@LB@5'-CAA...ACAGU A AAA CAUUA...UGC-3'@LB@ CCAGG GAAUUU UGGCUGC@LB@ ||||| :|||:| |||||||@LB@ GGUCC UUUAGA ACCGACG@LB@3'-UUU...GUUGU C CGGCA...GUG-5'@LB@ | |@LB@ 75 55@LB@@LB@@LB@Energy -11.62 kcal/mol@LB@Hybridization Energy -24.2568 kcal/mol@LB@Unfolding Energy - mRNA 4.50323 kcal/mol@LB@Unfolding Energy - sRNA 8.13729 kcal/mol@LB@@LB@Position - mRNA 187 -- 208@LB@Position - sRNA 56 -- 74@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 56 -- 62@LB@ |
171 |
0.01011 |
0.2071 |
b4086 |
alsC |
-10.38 |
0.118114 |
189 -- 207 |
53 -- 70 |
D-allose ABC transporter permease |
|
_____________188_________________208\n_____________|___________________|\n5'-CGC...GAAGA_______A____A__G___UUACC...CGA-3'\n______________GGAGAUU_UGGC_UG_GCU\n______________|||:||:_||||_||_||:\n______________CCUUUAG_ACCG_AC_CGG\n3'-UUU...UGGUC_______A_______G___CAUUU...GUG-5'\n_____________|___________________|\n_____________71__________________52\n |
189 -- 195 |
64 -- 70 |
-21.9341 kcal/mol |
4.72392 kcal/mol |
6.83419 kcal/mol |
188 208@LB@ | |@LB@5'-CGC...GAAGA A A G UUACC...CGA-3'@LB@ GGAGAUU UGGC UG GCU@LB@ |||:||: |||| || ||:@LB@ CCUUUAG ACCG AC CGG@LB@3'-UUU...UGGUC A G CAUUU...GUG-5'@LB@ | |@LB@ 71 52@LB@@LB@@LB@Energy -10.38 kcal/mol@LB@Hybridization Energy -21.9341 kcal/mol@LB@Unfolding Energy - mRNA 4.72392 kcal/mol@LB@Unfolding Energy - sRNA 6.83419 kcal/mol@LB@@LB@Position - mRNA 189 -- 207@LB@Position - sRNA 53 -- 70@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 64 -- 70@LB@ |
25 |
0.001541 |
0.1727 |
b1948 |
fliP |
-12.25 |
0.051366 |
190 -- 216 |
44 -- 71 |
flagellar biosynthesis protein |
|
_____________189__________________________217\n_____________|____________________________|\n5'-AUU...GUAGC________C__A_________UU_____CUGUC...GCG-3'\n______________GGGAGAUC_UG__UGCGUCGU__AUUGU\n______________||||:|||_||__||||:|||__|||:|\n______________CCCUUUAG_AC__ACGCGGCA__UAAUA\n3'-UUU...GUGGU________A__CG________UU_____AUACU...GUG-5'\n_____________|____________________________|\n_____________72___________________________43\n |
203 -- 209 |
51 -- 57 |
-29.2591 kcal/mol |
10.1171 kcal/mol |
6.89657 kcal/mol |
189 217@LB@ | |@LB@5'-AUU...GUAGC C A UU CUGUC...GCG-3'@LB@ GGGAGAUC UG UGCGUCGU AUUGU@LB@ ||||:||| || ||||:||| |||:|@LB@ CCCUUUAG AC ACGCGGCA UAAUA@LB@3'-UUU...GUGGU A CG UU AUACU...GUG-5'@LB@ | |@LB@ 72 43@LB@@LB@@LB@Energy -12.25 kcal/mol@LB@Hybridization Energy -29.2591 kcal/mol@LB@Unfolding Energy - mRNA 10.1171 kcal/mol@LB@Unfolding Energy - sRNA 6.89657 kcal/mol@LB@@LB@Position - mRNA 190 -- 216@LB@Position - sRNA 44 -- 71@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 51 -- 57@LB@ |
133 |
0.007533 |
0.1993 |
b2194 |
ccmH |
-11.64 |
0.067570 |
191 -- 199 |
1 -- 9 |
heme lyase CcmH subunit |
|
_____________190_______200\n_____________|_________|\n5'-CUG...UAAGG_________AAUGA...AGU-3'\n______________AGGCCGCAC\n______________|||||||||\n______________UCCGGCGUG\n3'-UUU...AAAAG_________-5'\n_____________|________|\n_____________10_______1\n |
193 -- 199 |
1 -- 7 |
-19.8862 kcal/mol |
2.96679 kcal/mol |
5.10726 kcal/mol |
190 200@LB@ | |@LB@5'-CUG...UAAGG AAUGA...AGU-3'@LB@ AGGCCGCAC@LB@ |||||||||@LB@ UCCGGCGUG@LB@3'-UUU...AAAAG -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -11.64 kcal/mol@LB@Hybridization Energy -19.8862 kcal/mol@LB@Unfolding Energy - mRNA 2.96679 kcal/mol@LB@Unfolding Energy - sRNA 5.10726 kcal/mol@LB@@LB@Position - mRNA 191 -- 199@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 1 -- 7@LB@ |
80 |
0.004451 |
0.1855 |
b3578 |
yiaN |
-12.19 |
0.052777 |
198 -- 212 |
52 -- 66 |
2 3-diketo-L-gulonate TRAP transporter large permease protein |
|
_____________197_____________213\n_____________|_______________|\n5'-GGC...GCUUA___A___________AUUUU...UCU-3'\n______________AUC_UGGCUGUGCUG\n______________|||_||||||:||:|\n______________UAG_ACCGACGCGGC\n3'-UUU...CCCUU___A___________AUUUA...GUG-5'\n_____________|_______________|\n_____________67______________51\n |
206 -- 212 |
52 -- 58 |
-22.6247 kcal/mol |
3.67694 kcal/mol |
6.76246 kcal/mol |
197 213@LB@ | |@LB@5'-GGC...GCUUA A AUUUU...UCU-3'@LB@ AUC UGGCUGUGCUG@LB@ ||| ||||||:||:|@LB@ UAG ACCGACGCGGC@LB@3'-UUU...CCCUU A AUUUA...GUG-5'@LB@ | |@LB@ 67 51@LB@@LB@@LB@Energy -12.19 kcal/mol@LB@Hybridization Energy -22.6247 kcal/mol@LB@Unfolding Energy - mRNA 3.67694 kcal/mol@LB@Unfolding Energy - sRNA 6.76246 kcal/mol@LB@@LB@Position - mRNA 198 -- 212@LB@Position - sRNA 52 -- 66@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 52 -- 58@LB@ |
176 |
0.01044 |
0.208 |
b0933 |
ssuB |
-9.69 |
0.158756 |
203 -- 226 |
69 -- 90 |
aliphatic sulfonate ABC transporter ATPase |
|
_____________202______________________227\n_____________|________________________|\n5'-AUU...GGUAU_________UC___UGA_______CACGC...AUA-3'\n______________GAAUACUGC__GUC___ACCAGGG\n______________|||||||||__|:|___|||||||\n______________CUUAUGACG__CGG___UGGUCCC\n3'-UUU...ACGCG______________UUG_______UUUAG...GUG-5'\n_____________|________________________|\n_____________91_______________________68\n |
220 -- 226 |
69 -- 75 |
-28.101 kcal/mol |
8.24441 kcal/mol |
10.1628 kcal/mol |
202 227@LB@ | |@LB@5'-AUU...GGUAU UC UGA CACGC...AUA-3'@LB@ GAAUACUGC GUC ACCAGGG@LB@ ||||||||| |:| |||||||@LB@ CUUAUGACG CGG UGGUCCC@LB@3'-UUU...ACGCG UUG UUUAG...GUG-5'@LB@ | |@LB@ 91 68@LB@@LB@@LB@Energy -9.69 kcal/mol@LB@Hybridization Energy -28.101 kcal/mol@LB@Unfolding Energy - mRNA 8.24441 kcal/mol@LB@Unfolding Energy - sRNA 10.1628 kcal/mol@LB@@LB@Position - mRNA 203 -- 226@LB@Position - sRNA 69 -- 90@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 69 -- 75@LB@ |
34 |
0.001871 |
0.1727 |
b4485 |
ytfR |
-15.36 |
0.012458 |
204 -- 227 |
64 -- 86 |
putative sugar ABC transporter ATPase |
|
_____________203_______________________228\n_____________|_________________________|\n5'-CCU...CCAUG__GAC__A_________________CUCCG...GCC-3'\n______________AC___CG_CCAACACCA_GGAGAUC\n______________||___||_|||||||||_|||:|||\n______________UG___GC_GGUUGUGGU_CCUUUAG\n3'-UUU...GCUUA__AC_____________C_______AACCG...GUG-5'\n_____________|_________________________|\n_____________87________________________63\n |
221 -- 227 |
64 -- 70 |
-26.9267 kcal/mol |
4.18191 kcal/mol |
7.38435 kcal/mol |
203 228@LB@ | |@LB@5'-CCU...CCAUG GAC A CUCCG...GCC-3'@LB@ AC CG CCAACACCA GGAGAUC@LB@ || || ||||||||| |||:|||@LB@ UG GC GGUUGUGGU CCUUUAG@LB@3'-UUU...GCUUA AC C AACCG...GUG-5'@LB@ | |@LB@ 87 63@LB@@LB@@LB@Energy -15.36 kcal/mol@LB@Hybridization Energy -26.9267 kcal/mol@LB@Unfolding Energy - mRNA 4.18191 kcal/mol@LB@Unfolding Energy - sRNA 7.38435 kcal/mol@LB@@LB@Position - mRNA 204 -- 227@LB@Position - sRNA 64 -- 86@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 64 -- 70@LB@ |