73 |
0.001571 |
0.0758 |
b3746 |
ravA |
-8.41 |
0.246327 |
240 -- 262 |
54 -- 75 |
hexameric AAA+ MoxR family ATPase putative molecular chaperone |
|
_____________239_____________________263\n_____________|_______________________|\n5'-UGA...CCCGC___A_____UC___G________GCUUU...UAU-3'\n______________CUG_GCAGU__GUU_GAAAAGGG\n______________||:_|||||__:||_:||||:||\n______________GAU_CGUCA__UAA_UUUUUUCC\n3'-UUU...AACAC___A_____U____G________UUCAU...ACG-5'\n_____________|_______________________|\n_____________76______________________53\n |
256 -- 262 |
54 -- 60 |
-19.2007 kcal/mol |
7.09588 kcal/mol |
3.69534 kcal/mol |
239 263@LB@ | |@LB@5'-UGA...CCCGC A UC G GCUUU...UAU-3'@LB@ CUG GCAGU GUU GAAAAGGG@LB@ ||: ||||| :|| :||||:||@LB@ GAU CGUCA UAA UUUUUUCC@LB@3'-UUU...AACAC A U G UUCAU...ACG-5'@LB@ | |@LB@ 76 53@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -19.2007 kcal/mol@LB@Unfolding Energy - mRNA 7.09588 kcal/mol@LB@Unfolding Energy - sRNA 3.69534 kcal/mol@LB@@LB@Position - mRNA 240 -- 262@LB@Position - sRNA 54 -- 75@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 54 -- 60@LB@ |
74 |
0.001758 |
0.08273 |
b4012 |
yjaB |
-8.69 |
0.215298 |
234 -- 243 |
51 -- 60 |
GNAT-family putative N-acetyltransferase; acetyl coenzyme A-binding protein |
|
_____________233________244\n_____________|__________|\n5'-AAG...AUGAG__________AACUC...CAG-3'\n______________GAAGGGGAGG\n______________:||::|||:|\n______________UUUUUCCUUC\n3'-UUU...UAAGU__________AUUCU...ACG-5'\n_____________|__________|\n_____________61_________50\n |
237 -- 243 |
51 -- 57 |
-10.2171 kcal/mol |
0.810771 kcal/mol |
0.715621 kcal/mol |
233 244@LB@ | |@LB@5'-AAG...AUGAG AACUC...CAG-3'@LB@ GAAGGGGAGG@LB@ :||::|||:|@LB@ UUUUUCCUUC@LB@3'-UUU...UAAGU AUUCU...ACG-5'@LB@ | |@LB@ 61 50@LB@@LB@@LB@Energy -8.69 kcal/mol@LB@Hybridization Energy -10.2171 kcal/mol@LB@Unfolding Energy - mRNA 0.810771 kcal/mol@LB@Unfolding Energy - sRNA 0.715621 kcal/mol@LB@@LB@Position - mRNA 234 -- 243@LB@Position - sRNA 51 -- 60@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 51 -- 57@LB@ |
75 |
0.001837 |
0.08273 |
b1816 |
yoaE |
-14.98 |
0.004573 |
118 -- 155 |
1 -- 35 |
putative membrane protein/conserved protein |
|
_____________117____________________________________156\n_____________|______________________________________|\n5'-GAU...CUCUA___C__A___U_______C__U___U____A_______AUUAU...UUC-3'\n______________UGC_GC_CCU_UCGUUUG_AU_UUG_CGUU_CGCCUGC\n______________:||_:|_||:_|||:|||_|:_|||_|:||_|:|||||\n______________GCG_UG_GGG_AGCGAAC_UG_AAC_GUAA_GUGGACG\n3'-UUU...ACCUC___U__C___U__________C________________-5'\n_____________|_____________________________________|\n_____________36____________________________________1\n |
149 -- 155 |
1 -- 7 |
-36.6264 kcal/mol |
6.36146 kcal/mol |
15.286 kcal/mol |
117 156@LB@ | |@LB@5'-GAU...CUCUA C A U C U U A AUUAU...UUC-3'@LB@ UGC GC CCU UCGUUUG AU UUG CGUU CGCCUGC@LB@ :|| :| ||: |||:||| |: ||| |:|| |:|||||@LB@ GCG UG GGG AGCGAAC UG AAC GUAA GUGGACG@LB@3'-UUU...ACCUC U C U C -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -14.98 kcal/mol@LB@Hybridization Energy -36.6264 kcal/mol@LB@Unfolding Energy - mRNA 6.36146 kcal/mol@LB@Unfolding Energy - sRNA 15.286 kcal/mol@LB@@LB@Position - mRNA 118 -- 155@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 1 -- 7@LB@ |
76 |
0.001842 |
0.08273 |
b1717 |
rpmI |
-9.61 |
0.135308 |
218 -- 256 |
48 -- 92 |
50S ribosomal subunit protein L35 |
|
_____________217___________________________________________257\n_____________|_____________________________________________|\n5'-GCG...AAGAC_____________GC_____A___C____________ACC_____AGGUG...UGA-3'\n______________CGUACG___CGGU__UGCUA_GCG____UUCAAAAAA___GGUAA\n______________||||||___|::|__|||||_||:____|||||||||___:||||\n______________GCAUGC___GUUA__ACGAU_CGU____AAGUUUUUU___UCAUU\n3'-UUU...CCGCA______UUA____AC_____A___CAUU_________CCU_____CUGUU...ACG-5'\n_____________|_____________________________________________|\n_____________93____________________________________________47\n |
242 -- 248 |
56 -- 62 |
-26.2826 kcal/mol |
11.8203 kcal/mol |
4.85131 kcal/mol |
217 257@LB@ | |@LB@5'-GCG...AAGAC GC A C ACC AGGUG...UGA-3'@LB@ CGUACG CGGU UGCUA GCG UUCAAAAAA GGUAA@LB@ |||||| |::| ||||| ||: ||||||||| :||||@LB@ GCAUGC GUUA ACGAU CGU AAGUUUUUU UCAUU@LB@3'-UUU...CCGCA UUA AC A CAUU CCU CUGUU...ACG-5'@LB@ | |@LB@ 93 47@LB@@LB@@LB@Energy -9.61 kcal/mol@LB@Hybridization Energy -26.2826 kcal/mol@LB@Unfolding Energy - mRNA 11.8203 kcal/mol@LB@Unfolding Energy - sRNA 4.85131 kcal/mol@LB@@LB@Position - mRNA 218 -- 256@LB@Position - sRNA 48 -- 92@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 56 -- 62@LB@ |
77 |
0.00185 |
0.08273 |
b2325 |
yfcL |
-11.04 |
0.061434 |
190 -- 213 |
35 -- 57 |
uncharacterized protein |
|
_____________189______________________214\n_____________|________________________|\n5'-AAC...ACAAU______AG________CGC_____UUGAA...GCC-3'\n______________GAGGAA__AAGAUGAU___GGAGU\n______________:|||||__||||::||___||||:\n______________UUCCUU__UUCUGUUA___CCUCG\n3'-UUU...GUUUU______CA________UA______CGUUG...ACG-5'\n_____________|________________________|\n_____________58_______________________34\n |
199 -- 205 |
42 -- 48 |
-19.5886 kcal/mol |
4.3321 kcal/mol |
4.1846 kcal/mol |
189 214@LB@ | |@LB@5'-AAC...ACAAU AG CGC UUGAA...GCC-3'@LB@ GAGGAA AAGAUGAU GGAGU@LB@ :||||| ||||::|| ||||:@LB@ UUCCUU UUCUGUUA CCUCG@LB@3'-UUU...GUUUU CA UA CGUUG...ACG-5'@LB@ | |@LB@ 58 34@LB@@LB@@LB@Energy -11.04 kcal/mol@LB@Hybridization Energy -19.5886 kcal/mol@LB@Unfolding Energy - mRNA 4.3321 kcal/mol@LB@Unfolding Energy - sRNA 4.1846 kcal/mol@LB@@LB@Position - mRNA 190 -- 213@LB@Position - sRNA 35 -- 57@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 42 -- 48@LB@ |
78 |
0.001866 |
0.08273 |
b2952 |
yggT |
-14.70 |
0.005634 |
84 -- 104 |
37 -- 56 |
putative inner membrane protein; compensates for loss in K+ uptake |
|
_____________83____________________105\n_____________|_____________________|\n5'-AGG...UCUCU_____U__C____________AGCCG...ACA-3'\n______________GGGAA_GU_GGACGAUAUGGA\n______________:||||_||_:|||:|||||||\n______________UCCUU_CA_UCUGUUAUACCU\n3'-UUU...UUUUU________U____________CGCGU...ACG-5'\n_____________|_____________________|\n_____________57____________________36\n |
98 -- 104 |
37 -- 43 |
-24.1681 kcal/mol |
5.76987 kcal/mol |
3.6645 kcal/mol |
83 105@LB@ | |@LB@5'-AGG...UCUCU U C AGCCG...ACA-3'@LB@ GGGAA GU GGACGAUAUGGA@LB@ :|||| || :|||:|||||||@LB@ UCCUU CA UCUGUUAUACCU@LB@3'-UUU...UUUUU U CGCGU...ACG-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -14.70 kcal/mol@LB@Hybridization Energy -24.1681 kcal/mol@LB@Unfolding Energy - mRNA 5.76987 kcal/mol@LB@Unfolding Energy - sRNA 3.6645 kcal/mol@LB@@LB@Position - mRNA 84 -- 104@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 37 -- 43@LB@ |
79 |
0.001882 |
0.08273 |
b2219 |
atoS |
-12.26 |
0.029240 |
6 -- 44 |
51 -- 94 |
sensory histidine kinase in two-component regulatory system with AtoC |
|
_____________5_____________________________________________45\n_____________|_____________________________________________|\n______5'-UCAGG__________AA__A_____AA_______U__________C____CUCCG...AUA-3'\n______________GUUGUACGAA__GA____GC_____GGUA_UUCAAAGGGG_GAAG\n______________||:|||||||__:|____||_____:|||_||||||:::|_||||\n______________CAGCAUGCUU__UU____CG_____UCAU_AAGUUUUUUC_CUUC\n3'-UUU...AGCCG__________AG__AACA__AUACG____U_______________AUUCU...ACG-5'\n_____________|_____________________________________________|\n_____________95____________________________________________50\n |
9 -- 15 |
85 -- 91 |
-28.4119 kcal/mol |
11.2894 kcal/mol |
4.86774 kcal/mol |
5 45@LB@ | |@LB@ 5'-UCAGG AA A AA U C CUCCG...AUA-3'@LB@ GUUGUACGAA GA GC GGUA UUCAAAGGGG GAAG@LB@ ||:||||||| :| || :||| ||||||:::| ||||@LB@ CAGCAUGCUU UU CG UCAU AAGUUUUUUC CUUC@LB@3'-UUU...AGCCG AG AACA AUACG U AUUCU...ACG-5'@LB@ | |@LB@ 95 50@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -28.4119 kcal/mol@LB@Unfolding Energy - mRNA 11.2894 kcal/mol@LB@Unfolding Energy - sRNA 4.86774 kcal/mol@LB@@LB@Position - mRNA 6 -- 44@LB@Position - sRNA 51 -- 94@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 85 -- 91@LB@ |
80 |
0.001886 |
0.08273 |
b3205 |
yhbJ |
-9.88 |
0.117656 |
21 -- 27 |
1 -- 7 |
adaptor protein for GlmZ/GlmY sRNA decay glucosamine-6-phosphate-regulated; NTPase |
|
_____________20______28\n_____________|_______|\n5'-CGG...AAACG_______AUACU...CCG-3'\n______________CACCUGC\n______________|||||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
21 -- 27 |
1 -- 7 |
-13.6981 kcal/mol |
1.48735 kcal/mol |
2.34039 kcal/mol |
20 28@LB@ | |@LB@5'-CGG...AAACG AUACU...CCG-3'@LB@ CACCUGC@LB@ |||||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -13.6981 kcal/mol@LB@Unfolding Energy - mRNA 1.48735 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 21 -- 27@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 1 -- 7@LB@ |
81 |
0.001932 |
0.08273 |
b2763 |
cysI |
-12.36 |
0.027367 |
234 -- 285 |
1 -- 58 |
sulfite reductase beta subunit NAD(P)-binding heme-binding |
|
_____________233_________________________________________________________286\n_____________|___________________________________________________________|\n5'-GAA...UGGUC_______AACU_____ACGCC__________AA______A___AA_____AC_______GCGGC...CGG-3'\n______________GAAGGAA____GACAG_____GAGCGC_AUG______GC_UGA____GCA__UACCUGC\n______________:||||||____||||:_____||||||_|:|______||_|||____|||__:||||||\n______________UUUCCUU____CUGUU_____CUCGCG_UGC______CG_ACU____CGU__GUGGACG\n3'-UUU...AGUUU_______CAUU_____AUAC_______U___GGGUAG__A___GCAA___AA_______-5'\n_____________|__________________________________________________________|\n_____________59_________________________________________________________1\n |
279 -- 285 |
1 -- 7 |
-40.3147 kcal/mol |
11.0832 kcal/mol |
16.8724 kcal/mol |
233 286@LB@ | |@LB@5'-GAA...UGGUC AACU ACGCC AA A AA AC GCGGC...CGG-3'@LB@ GAAGGAA GACAG GAGCGC AUG GC UGA GCA UACCUGC@LB@ :|||||| ||||: |||||| |:| || ||| ||| :||||||@LB@ UUUCCUU CUGUU CUCGCG UGC CG ACU CGU GUGGACG@LB@3'-UUU...AGUUU CAUU AUAC U GGGUAG A GCAA AA -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -12.36 kcal/mol@LB@Hybridization Energy -40.3147 kcal/mol@LB@Unfolding Energy - mRNA 11.0832 kcal/mol@LB@Unfolding Energy - sRNA 16.8724 kcal/mol@LB@@LB@Position - mRNA 234 -- 285@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 1 -- 7@LB@ |
82 |
0.001946 |
0.08273 |
b2661 |
gabD |
-10.13 |
0.102437 |
19 -- 25 |
1 -- 7 |
succinate-semialdehyde dehydrogenase I NADP-dependent |
|
_____________18______26\n_____________|_______|\n5'-CAC...AUCCA_______AAUGC...CGG-3'\n______________CACCUGC\n______________|||||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
19 -- 25 |
1 -- 7 |
-13.7555 kcal/mol |
1.28845 kcal/mol |
2.34039 kcal/mol |
18 26@LB@ | |@LB@5'-CAC...AUCCA AAUGC...CGG-3'@LB@ CACCUGC@LB@ |||||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -10.13 kcal/mol@LB@Hybridization Energy -13.7555 kcal/mol@LB@Unfolding Energy - mRNA 1.28845 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 19 -- 25@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 1 -- 7@LB@ |