| 136 |
0.005087 |
0.1318 |
b3057 |
bacA |
-11.47 |
0.047548 |
153 -- 174 |
49 -- 71 |
undecaprenyl pyrophosphate phosphatase |
|
_____________152_____________________175\n_____________|_______________________|\n5'-UUC...CAUAC_____________C___C_____CAUUU...UUG-3'\n______________GCAGUAGUUCGGA_AAG__GGUA\n______________||||||:|||::|_|||__:|||\n______________CGUCAUUAAGUUU_UUC__UCAU\n3'-UUU...CGAUA_____________U___CU____UCUGU...ACG-5'\n_____________|_______________________|\n_____________72______________________48\n |
156 -- 162 |
62 -- 68 |
-21.4579 kcal/mol |
5.97 kcal/mol |
4.02052 kcal/mol |
152 175@LB@ | |@LB@5'-UUC...CAUAC C C CAUUU...UUG-3'@LB@ GCAGUAGUUCGGA AAG GGUA@LB@ ||||||:|||::| ||| :|||@LB@ CGUCAUUAAGUUU UUC UCAU@LB@3'-UUU...CGAUA U CU UCUGU...ACG-5'@LB@ | |@LB@ 72 48@LB@@LB@@LB@Energy -11.47 kcal/mol@LB@Hybridization Energy -21.4579 kcal/mol@LB@Unfolding Energy - mRNA 5.97 kcal/mol@LB@Unfolding Energy - sRNA 4.02052 kcal/mol@LB@@LB@Position - mRNA 153 -- 174@LB@Position - sRNA 49 -- 71@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 137 |
0.005185 |
0.1333 |
b2256 |
arnD |
-10.61 |
0.078275 |
62 -- 106 |
20 -- 56 |
undecaprenyl phosphate-alpha-L-ara4FN deformylase |
|
_____________61____________________________________________107\n_____________|_____________________________________________|\n5'-UUC...AUAUC____C____A___UC___AACC____AUCC__________C____GCCUG...AGG-3'\n______________AGGA_GUAG_GCA__GUA____GAGC____GCAAUGCCCA_CGCU\n______________||||_|||:_:||__:||____||||____||||:|||||_||||\n______________UCCU_CAUU_UGU__UAU____CUCG____CGUUGCGGGU_GCGA\n3'-UUU...UUUUU____U____C________AC____________________A____ACUGC...ACG-5'\n_____________|_____________________________________________|\n_____________57____________________________________________19\n |
95 -- 101 |
25 -- 31 |
-37.0072 kcal/mol |
12.6417 kcal/mol |
13.7538 kcal/mol |
61 107@LB@ | |@LB@5'-UUC...AUAUC C A UC AACC AUCC C GCCUG...AGG-3'@LB@ AGGA GUAG GCA GUA GAGC GCAAUGCCCA CGCU@LB@ |||| |||: :|| :|| |||| ||||:||||| ||||@LB@ UCCU CAUU UGU UAU CUCG CGUUGCGGGU GCGA@LB@3'-UUU...UUUUU U C AC A ACUGC...ACG-5'@LB@ | |@LB@ 57 19@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -37.0072 kcal/mol@LB@Unfolding Energy - mRNA 12.6417 kcal/mol@LB@Unfolding Energy - sRNA 13.7538 kcal/mol@LB@@LB@Position - mRNA 62 -- 106@LB@Position - sRNA 20 -- 56@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 138 |
0.00525 |
0.1336 |
b0031 |
dapB |
-12.01 |
0.034078 |
16 -- 66 |
61 -- 114 |
dihydrodipicolinate reductase |
|
_____________15____________________________________________________________67\n_____________|_____________________________________________________________|\n5'-GUG...GAGGU__________________________ACCU____CAUGUU_______________C_____UCGAC...UGG-3'\n______________GCUGGCUC________UGGCGUCGUA____GUCA______AUUG_GC_AUGCAGU_AUUCA\n______________||:|:|||________:|||||||||____:|||______||||_||_|||||||_|||||\n______________CGGCUGAG________GCCGCAGCAU____UAGU______UAAC_CG_UACGUCA_UAAGU\n___3'-UUUUUUUU________UAGUUUCA__________GCU_______________A__A_______U_____UUUUU...ACG-5'\n_____________|_____________________________________________________________|\n_____________115___________________________________________________________60\n |
54 -- 60 |
67 -- 73 |
-49.0979 kcal/mol |
18.4253 kcal/mol |
18.6631 kcal/mol |
15 67@LB@ | |@LB@5'-GUG...GAGGU ACCU CAUGUU C UCGAC...UGG-3'@LB@ GCUGGCUC UGGCGUCGUA GUCA AUUG GC AUGCAGU AUUCA@LB@ ||:|:||| :||||||||| :||| |||| || ||||||| |||||@LB@ CGGCUGAG GCCGCAGCAU UAGU UAAC CG UACGUCA UAAGU@LB@ 3'-UUUUUUUU UAGUUUCA GCU A A U UUUUU...ACG-5'@LB@ | |@LB@ 115 60@LB@@LB@@LB@Energy -12.01 kcal/mol@LB@Hybridization Energy -49.0979 kcal/mol@LB@Unfolding Energy - mRNA 18.4253 kcal/mol@LB@Unfolding Energy - sRNA 18.6631 kcal/mol@LB@@LB@Position - mRNA 16 -- 66@LB@Position - sRNA 61 -- 114@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 139 |
0.00529 |
0.1336 |
b3211 |
yhcC |
-9.14 |
0.172713 |
199 -- 227 |
39 -- 75 |
putative Fe-S oxidoreductase Radical SAM superfamily protein |
|
_____________198___________________________________228\n_____________|_____________________________________|\n5'-UGC...UCAGA_________UA________UU________U_______UUUGG...GCC-3'\n______________UUAUGCAGU____CAGAAA________AG_CAAUAUG\n______________:||||||||____||:|||________||_|||||||\n______________GAUACGUCA____GUUUUU________UC_GUUAUAC\n3'-UUU...AACAC_________UUAA______UCCUUCAU__U_______CUCGC...ACG-5'\n_____________|_____________________________________|\n_____________76____________________________________38\n |
221 -- 227 |
39 -- 45 |
-19.1659 kcal/mol |
3.3824 kcal/mol |
6.6377 kcal/mol |
198 228@LB@ | |@LB@5'-UGC...UCAGA UA UU U UUUGG...GCC-3'@LB@ UUAUGCAGU CAGAAA AG CAAUAUG@LB@ :|||||||| ||:||| || |||||||@LB@ GAUACGUCA GUUUUU UC GUUAUAC@LB@3'-UUU...AACAC UUAA UCCUUCAU U CUCGC...ACG-5'@LB@ | |@LB@ 76 38@LB@@LB@@LB@Energy -9.14 kcal/mol@LB@Hybridization Energy -19.1659 kcal/mol@LB@Unfolding Energy - mRNA 3.3824 kcal/mol@LB@Unfolding Energy - sRNA 6.6377 kcal/mol@LB@@LB@Position - mRNA 199 -- 227@LB@Position - sRNA 39 -- 75@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 140 |
0.005308 |
0.1336 |
b0055 |
djlA |
-7.67 |
0.341620 |
49 -- 94 |
41 -- 89 |
membrane-anchored DnaK co-chaperone DNA-binding protein |
|
_____________48_________________________________________________95\n_____________|__________________________________________________|\n5'-GAC...GAAUA__________G______G___C_GC___G__U__C_______U_______CAAAU...UUG-3'\n______________GCG__UCAGU_GUGUUA_GCA_G__AUU_AA_GA___AGGUA_GAUAAUG\n______________:||__|||:|_|||:||_|||_|__|||_||_:|___|:|||_||:|||:\n______________UGC__AGUUA_CACGAU_CGU_C__UAA_UU_UU___UUCAU_CUGUUAU\n3'-UUU...CAGCA___UU_____A______A_____AU___G__U__UCC_____U_______ACCUC...ACG-5'\n_____________|__________________________________________________|\n_____________90_________________________________________________40\n |
88 -- 94 |
41 -- 47 |
-26.3807 kcal/mol |
12.8315 kcal/mol |
5.88014 kcal/mol |
48 95@LB@ | |@LB@5'-GAC...GAAUA G G C GC G U C U CAAAU...UUG-3'@LB@ GCG UCAGU GUGUUA GCA G AUU AA GA AGGUA GAUAAUG@LB@ :|| |||:| |||:|| ||| | ||| || :| |:||| ||:|||:@LB@ UGC AGUUA CACGAU CGU C UAA UU UU UUCAU CUGUUAU@LB@3'-UUU...CAGCA UU A A AU G U UCC U ACCUC...ACG-5'@LB@ | |@LB@ 90 40@LB@@LB@@LB@Energy -7.67 kcal/mol@LB@Hybridization Energy -26.3807 kcal/mol@LB@Unfolding Energy - mRNA 12.8315 kcal/mol@LB@Unfolding Energy - sRNA 5.88014 kcal/mol@LB@@LB@Position - mRNA 49 -- 94@LB@Position - sRNA 41 -- 89@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 141 |
0.005411 |
0.1351 |
b3260 |
dusB |
-10.20 |
0.098848 |
236 -- 254 |
20 -- 38 |
tRNA-dihydrouridine synthase B |
|
_____________235_________________255\n_____________|___________________|\n5'-ACU...CGCCU__U____________G___GGCAU...GAG-3'\n______________GA_CGCAGCGCCCAU_GCU\n______________||_||||:|||||||_|||\n______________CU_GCGUUGCGGGUA_CGA\n3'-UUU...UAUAC__C____________G___ACUGC...ACG-5'\n_____________|___________________|\n_____________39__________________19\n |
244 -- 250 |
24 -- 30 |
-30.8965 kcal/mol |
8.5282 kcal/mol |
12.1733 kcal/mol |
235 255@LB@ | |@LB@5'-ACU...CGCCU U G GGCAU...GAG-3'@LB@ GA CGCAGCGCCCAU GCU@LB@ || ||||:||||||| |||@LB@ CU GCGUUGCGGGUA CGA@LB@3'-UUU...UAUAC C G ACUGC...ACG-5'@LB@ | |@LB@ 39 19@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -30.8965 kcal/mol@LB@Unfolding Energy - mRNA 8.5282 kcal/mol@LB@Unfolding Energy - sRNA 12.1733 kcal/mol@LB@@LB@Position - mRNA 236 -- 254@LB@Position - sRNA 20 -- 38@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 143 |
0.005544 |
0.1363 |
b2936 |
loiP |
-13.30 |
0.014839 |
83 -- 152 |
1 -- 41 |
Phe-Phe periplasmic metalloprotease OM lipoprotein; low salt-inducible; Era-binding heat shock protein |
|
_____________82______________________________________________________________________153\n_____________|_______________________________________________________________________|\n5'-UUG...CUCGC___UU______UCUACU_______C____GCGCUUUUCCUUAUAC__AGACUGA____C____________AAACG...AAG-3'\n______________AUG__GCGCAA______CGCCCGU_CGCU________________UG_______GCGU_G_AUUCACCUGC\n______________|||__||||||______|||||:|_||||________________||_______:|||_|_||||||||||\n______________UAC__CGCGUU______GCGGGUA_GCGA________________AC_______UGCA_C_UAAGUGGACG\n3'-UUU...UGUUA___CU_____________________________________________________A_G__________-5'\n_____________|______________________________________________________________________|\n_____________42_____________________________________________________________________1\n |
146 -- 152 |
1 -- 7 |
-44.3719 kcal/mol |
15.78 kcal/mol |
15.2922 kcal/mol |
82 153@LB@ | |@LB@5'-UUG...CUCGC UU UCUACU C GCGCUUUUCCUUAUAC AGACUGA C AAACG...AAG-3'@LB@ AUG GCGCAA CGCCCGU CGCU UG GCGU G AUUCACCUGC@LB@ ||| |||||| |||||:| |||| || :||| | ||||||||||@LB@ UAC CGCGUU GCGGGUA GCGA AC UGCA C UAAGUGGACG@LB@3'-UUU...UGUUA CU A G -5'@LB@ | |@LB@ 42 1@LB@@LB@@LB@Energy -13.30 kcal/mol@LB@Hybridization Energy -44.3719 kcal/mol@LB@Unfolding Energy - mRNA 15.78 kcal/mol@LB@Unfolding Energy - sRNA 15.2922 kcal/mol@LB@@LB@Position - mRNA 83 -- 152@LB@Position - sRNA 1 -- 41@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 144 |
0.005571 |
0.1363 |
b1843 |
yobB |
-15.05 |
0.004361 |
174 -- 196 |
50 -- 72 |
C-N hydrolase family protein |
|
_____________173_____________________197\n_____________|_______________________|\n5'-CCU...UAAUU______C____U___________CAUUA...CCA-3'\n______________UGCAGU_AUUU_GAAAAGGAAGU\n______________||||||_|||:_:||||||||||\n______________ACGUCA_UAAG_UUUUUCCUUCA\n3'-UUU...ACGAU______U____U___________UUCUG...ACG-5'\n_____________|_______________________|\n_____________73______________________49\n |
190 -- 196 |
50 -- 56 |
-24.355 kcal/mol |
5.29079 kcal/mol |
4.01539 kcal/mol |
173 197@LB@ | |@LB@5'-CCU...UAAUU C U CAUUA...CCA-3'@LB@ UGCAGU AUUU GAAAAGGAAGU@LB@ |||||| |||: :||||||||||@LB@ ACGUCA UAAG UUUUUCCUUCA@LB@3'-UUU...ACGAU U U UUCUG...ACG-5'@LB@ | |@LB@ 73 49@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -24.355 kcal/mol@LB@Unfolding Energy - mRNA 5.29079 kcal/mol@LB@Unfolding Energy - sRNA 4.01539 kcal/mol@LB@@LB@Position - mRNA 174 -- 196@LB@Position - sRNA 50 -- 72@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 145 |
0.00562 |
0.1365 |
b2532 |
trmJ |
-9.44 |
0.148020 |
215 -- 233 |
68 -- 84 |
tRNA mC32 mU32 2'-O-methyltransferase SAM-dependent |
|
_____________214_________________234\n_____________|___________________|\n5'-CGU...AAUAU__G__________G__G__ACGUC...UGU-3'\n______________UC_AAUUGUGCUG_UG_AG\n______________||_|||||||||:_||_||\n______________AG_UUAACACGAU_AC_UC\n3'-UUU...UGCUU________________G__AUUAA...ACG-5'\n_____________|___________________|\n_____________85__________________67\n |
221 -- 227 |
73 -- 79 |
-16.7979 kcal/mol |
3.71432 kcal/mol |
3.64047 kcal/mol |
214 234@LB@ | |@LB@5'-CGU...AAUAU G G G ACGUC...UGU-3'@LB@ UC AAUUGUGCUG UG AG@LB@ || |||||||||: || ||@LB@ AG UUAACACGAU AC UC@LB@3'-UUU...UGCUU G AUUAA...ACG-5'@LB@ | |@LB@ 85 67@LB@@LB@@LB@Energy -9.44 kcal/mol@LB@Hybridization Energy -16.7979 kcal/mol@LB@Unfolding Energy - mRNA 3.71432 kcal/mol@LB@Unfolding Energy - sRNA 3.64047 kcal/mol@LB@@LB@Position - mRNA 215 -- 233@LB@Position - sRNA 68 -- 84@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 73 -- 79@LB@ |
| 146 |
0.005657 |
0.1365 |
b4322 |
uxuA |
-7.47 |
0.371307 |
180 -- 195 |
52 -- 75 |
mannonate hydrolase |
|
_____________179______________________196\n_____________|________________________|\n5'-CAU...ACCCA________________________AAAUC...AUA-3'\n______________CUAUGU________GAAAGAGGAA\n______________|||||:________:|||:|||||\n______________GAUACG________UUUUUUCCUU\n3'-UUU...AACAC______UCAUUAAG__________CAUUC...ACG-5'\n_____________|________________________|\n_____________76_______________________51\n |
189 -- 195 |
52 -- 58 |
-13.8583 kcal/mol |
2.68591 kcal/mol |
3.70263 kcal/mol |
179 196@LB@ | |@LB@5'-CAU...ACCCA AAAUC...AUA-3'@LB@ CUAUGU GAAAGAGGAA@LB@ |||||: :|||:|||||@LB@ GAUACG UUUUUUCCUU@LB@3'-UUU...AACAC UCAUUAAG CAUUC...ACG-5'@LB@ | |@LB@ 76 51@LB@@LB@@LB@Energy -7.47 kcal/mol@LB@Hybridization Energy -13.8583 kcal/mol@LB@Unfolding Energy - mRNA 2.68591 kcal/mol@LB@Unfolding Energy - sRNA 3.70263 kcal/mol@LB@@LB@Position - mRNA 180 -- 195@LB@Position - sRNA 52 -- 75@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 52 -- 58@LB@ |
