134 |
0.006141 |
0.1605 |
b3413 |
gntX |
-10.72 |
0.183370 |
226 -- 267 |
37 -- 75 |
DNA catabolic protein |
|
_____________225__________________________________________268\n_____________|____________________________________________|\n5'-CCC...AUGCU___________AAU__CACUGG____AGG_______________GUUCG...AUA-3'\n______________GGCUAUGC_CG___GC______CGUU___UCAUU_GGGGGAUUU\n______________|:|||::|_|:___||______||||___|||:|_:||||||||\n______________CUGAUGUG_GU___CG______GCAA___AGUGA_UCCCCUAAA\n3'-UUU...CGUUU________U_______UUAA______CAA_____G_________GGUAC...GCA-5'\n_____________|____________________________________________|\n_____________76___________________________________________36\n |
261 -- 267 |
37 -- 43 |
-30.3916 kcal/mol |
14.8943 kcal/mol |
4.77966 kcal/mol |
225 268@LB@ | |@LB@5'-CCC...AUGCU AAU CACUGG AGG GUUCG...AUA-3'@LB@ GGCUAUGC CG GC CGUU UCAUU GGGGGAUUU@LB@ |:|||::| |: || |||| |||:| :||||||||@LB@ CUGAUGUG GU CG GCAA AGUGA UCCCCUAAA@LB@3'-UUU...CGUUU U UUAA CAA G GGUAC...GCA-5'@LB@ | |@LB@ 76 36@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -30.3916 kcal/mol@LB@Unfolding Energy - mRNA 14.8943 kcal/mol@LB@Unfolding Energy - sRNA 4.77966 kcal/mol@LB@@LB@Position - mRNA 226 -- 267@LB@Position - sRNA 37 -- 75@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 37 -- 43@LB@ |
21 |
0.0001827 |
0.02926 |
b1937 |
fliE |
-13.91 |
0.039102 |
192 -- 221 |
38 -- 77 |
flagellar basal-body component |
|
_____________191________________________________________222\n_____________|__________________________________________|\n5'-CUG...UCCGG_____GAGA___U_______A_____________________GAAGG...GUU-3'\n______________GAGAC____AUG_CAGCGAU_____________CAGGGGAUU\n______________:||||____|::_||||:||_____________|||||||||\n______________UUCUG____UGU_GUCGUUA_____________GUCCCCUAA\n3'-UUU...CCCGU_____AUG____________AGCAACAAAGUGA_________AGGUA...GCA-5'\n_____________|__________________________________________|\n_____________78_________________________________________37\n |
215 -- 221 |
38 -- 44 |
-25.7557 kcal/mol |
7.06678 kcal/mol |
4.77969 kcal/mol |
191 222@LB@ | |@LB@5'-CUG...UCCGG GAGA U A GAAGG...GUU-3'@LB@ GAGAC AUG CAGCGAU CAGGGGAUU@LB@ :|||| |:: ||||:|| |||||||||@LB@ UUCUG UGU GUCGUUA GUCCCCUAA@LB@3'-UUU...CCCGU AUG AGCAACAAAGUGA AGGUA...GCA-5'@LB@ | |@LB@ 78 37@LB@@LB@@LB@Energy -13.91 kcal/mol@LB@Hybridization Energy -25.7557 kcal/mol@LB@Unfolding Energy - mRNA 7.06678 kcal/mol@LB@Unfolding Energy - sRNA 4.77969 kcal/mol@LB@@LB@Position - mRNA 192 -- 221@LB@Position - sRNA 38 -- 77@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 38 -- 44@LB@ |
24 |
0.0002076 |
0.02926 |
b3459 |
panM |
-18.00 |
0.002751 |
9 -- 48 |
38 -- 75 |
PanD autocleavage accelerator panothenate synthesis |
|
_____________8___________________________________________49\n_____________|___________________________________________|\n___5'-AAAAUAAC_______A_G___GGAAU_____ACUA________________AUGCU...UUG-3'\n______________GGC_ACA_A_GGC_____AAUUC______UCAUUCAGGGGAUU\n______________|:|_|||_|_:||_____|||||______|||:||||||||||\n______________CUG_UGU_U_UCG_____UUAAG______AGUGAGUCCCCUAA\n3'-UUU...CGUUU___A___G_G_____________CAACAA______________AGGUA...GCA-5'\n_____________|___________________________________________|\n_____________76__________________________________________37\n |
42 -- 48 |
38 -- 44 |
-31.5918 kcal/mol |
8.81239 kcal/mol |
4.77946 kcal/mol |
8 49@LB@ | |@LB@ 5'-AAAAUAAC A G GGAAU ACUA AUGCU...UUG-3'@LB@ GGC ACA A GGC AAUUC UCAUUCAGGGGAUU@LB@ |:| ||| | :|| ||||| |||:||||||||||@LB@ CUG UGU U UCG UUAAG AGUGAGUCCCCUAA@LB@3'-UUU...CGUUU A G G CAACAA AGGUA...GCA-5'@LB@ | |@LB@ 76 37@LB@@LB@@LB@Energy -18.00 kcal/mol@LB@Hybridization Energy -31.5918 kcal/mol@LB@Unfolding Energy - mRNA 8.81239 kcal/mol@LB@Unfolding Energy - sRNA 4.77946 kcal/mol@LB@@LB@Position - mRNA 9 -- 48@LB@Position - sRNA 38 -- 75@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 38 -- 44@LB@ |
25 |
0.0002079 |
0.02926 |
b4064 |
ghxP |
-13.58 |
0.046769 |
115 -- 151 |
38 -- 73 |
guanine/hypoxanthine permease high affinity; guanine/hypoxanthine:H+ symporter |
|
_____________114____________________________________152\n_____________|______________________________________|\n5'-UCG...CAAAC___GA_____G__GAUAAC________GG_________GUCCG...UAA-3'\n______________CUG___GCAG_AA______GUUUCGCU__CAGGGGAUU\n______________||:___:|||_||______|||||:||__|||||||||\n______________GAU___UGUC_UU______CAAAGUGA__GUCCCCUAA\n3'-UUU...UUUCU___GUG____G__AAGCAA___________________AGGUA...GCA-5'\n_____________|______________________________________|\n_____________74_____________________________________37\n |
145 -- 151 |
38 -- 44 |
-32.2199 kcal/mol |
13.8672 kcal/mol |
4.77333 kcal/mol |
114 152@LB@ | |@LB@5'-UCG...CAAAC GA G GAUAAC GG GUCCG...UAA-3'@LB@ CUG GCAG AA GUUUCGCU CAGGGGAUU@LB@ ||: :||| || |||||:|| |||||||||@LB@ GAU UGUC UU CAAAGUGA GUCCCCUAA@LB@3'-UUU...UUUCU GUG G AAGCAA AGGUA...GCA-5'@LB@ | |@LB@ 74 37@LB@@LB@@LB@Energy -13.58 kcal/mol@LB@Hybridization Energy -32.2199 kcal/mol@LB@Unfolding Energy - mRNA 13.8672 kcal/mol@LB@Unfolding Energy - sRNA 4.77333 kcal/mol@LB@@LB@Position - mRNA 115 -- 151@LB@Position - sRNA 38 -- 73@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 38 -- 44@LB@ |
30 |
0.0004324 |
0.05073 |
b3364 |
tsgA |
-16.38 |
0.008733 |
203 -- 236 |
38 -- 75 |
putative transporter |
|
_____________202_____________________________________237\n_____________|_______________________________________|\n5'-CCA...AUCAU___________________CAUCAA______CAU_____AGCUU...AUA-3'\n______________GACUA___ACAGCAAU_CG_______GCUCA___GGAUU\n______________|||||___||||||||_||_______:||||___|||||\n______________CUGAU___UGUCGUUA_GC_______UGAGU___CCUAA\n3'-UUU...CGUUU_____GUG________A__AACAAAG_____CC______AGGUA...GCA-5'\n_____________|_______________________________________|\n_____________76______________________________________37\n |
209 -- 215 |
60 -- 66 |
-26.4683 kcal/mol |
5.30565 kcal/mol |
4.77946 kcal/mol |
202 237@LB@ | |@LB@5'-CCA...AUCAU CAUCAA CAU AGCUU...AUA-3'@LB@ GACUA ACAGCAAU CG GCUCA GGAUU@LB@ ||||| |||||||| || :|||| |||||@LB@ CUGAU UGUCGUUA GC UGAGU CCUAA@LB@3'-UUU...CGUUU GUG A AACAAAG CC AGGUA...GCA-5'@LB@ | |@LB@ 76 37@LB@@LB@@LB@Energy -16.38 kcal/mol@LB@Hybridization Energy -26.4683 kcal/mol@LB@Unfolding Energy - mRNA 5.30565 kcal/mol@LB@Unfolding Energy - sRNA 4.77946 kcal/mol@LB@@LB@Position - mRNA 203 -- 236@LB@Position - sRNA 38 -- 75@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 60 -- 66@LB@ |
59 |
0.002304 |
0.1363 |
b2508 |
guaB |
-11.36 |
0.139274 |
1 -- 26 |
38 -- 71 |
IMP dehydrogenase |
|
______________1__________________________________27\n______________|__________________________________|\n___________5'-__UA_______AA____________G_________GAGAA...AGC-3'\n______________AC__ACGGUAA___________AUU_CAGGGGAUU\n______________||__||:|:||___________|:|_|||||||||\n______________UG__UGUCGUU___________UGA_GUCCCCUAA\n3'-UUU...UCUGA__UG_______AAGCAACAAAG_____________AGGUA...GCA-5'\n_____________|___________________________________|\n_____________72__________________________________37\n |
20 -- 26 |
38 -- 44 |
-21.1303 kcal/mol |
5.02575 kcal/mol |
4.74986 kcal/mol |
1 27@LB@ | |@LB@ 5'- UA AA G GAGAA...AGC-3'@LB@ AC ACGGUAA AUU CAGGGGAUU@LB@ || ||:|:|| |:| |||||||||@LB@ UG UGUCGUU UGA GUCCCCUAA@LB@3'-UUU...UCUGA UG AAGCAACAAAG AGGUA...GCA-5'@LB@ | |@LB@ 72 37@LB@@LB@@LB@Energy -11.36 kcal/mol@LB@Hybridization Energy -21.1303 kcal/mol@LB@Unfolding Energy - mRNA 5.02575 kcal/mol@LB@Unfolding Energy - sRNA 4.74986 kcal/mol@LB@@LB@Position - mRNA 1 -- 26@LB@Position - sRNA 38 -- 71@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 38 -- 44@LB@ |
96 |
0.004462 |
0.1538 |
b3260 |
dusB |
-10.19 |
0.227205 |
72 -- 117 |
38 -- 74 |
tRNA-dihydrouridine synthase B |
|
_____________71_____________________________________________118\n_____________|______________________________________________|\n5'-ACU...AUCGC__C____U__UUUUAAAU_______U___AUC__U_____A_____GGUCA...GAG-3'\n______________AC_ACGC_CA________GCAAUUC_UUG___CA_CUCAG_GGAUU\n______________||_||:|_||________|||||||_|||___||_|||||_|||||\n______________UG_UGUG_GU________CGUUAAG_AAC___GU_GAGUC_CCUAA\n3'-UUU...GUUUC__A____U_________________C___AAA________C_____AGGUA...GCA-5'\n_____________|______________________________________________|\n_____________75_____________________________________________37\n |
90 -- 96 |
58 -- 64 |
-26.7161 kcal/mol |
11.7467 kcal/mol |
4.77867 kcal/mol |
71 118@LB@ | |@LB@5'-ACU...AUCGC C U UUUUAAAU U AUC U A GGUCA...GAG-3'@LB@ AC ACGC CA GCAAUUC UUG CA CUCAG GGAUU@LB@ || ||:| || ||||||| ||| || ||||| |||||@LB@ UG UGUG GU CGUUAAG AAC GU GAGUC CCUAA@LB@3'-UUU...GUUUC A U C AAA C AGGUA...GCA-5'@LB@ | |@LB@ 75 37@LB@@LB@@LB@Energy -10.19 kcal/mol@LB@Hybridization Energy -26.7161 kcal/mol@LB@Unfolding Energy - mRNA 11.7467 kcal/mol@LB@Unfolding Energy - sRNA 4.77867 kcal/mol@LB@@LB@Position - mRNA 72 -- 117@LB@Position - sRNA 38 -- 74@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 58 -- 64@LB@ |
112 |
0.004986 |
0.1545 |
b0118 |
acnB |
-15.18 |
0.018766 |
221 -- 251 |
38 -- 71 |
aconitate hydratase 2; aconitase B; 2-methyl-cis-aconitate hydratase |
|
_____________220________________________________252\n_____________|__________________________________|\n5'-GAG...CGUAA_________UGAG___GC_______G________GCGCC...UGC-3'\n______________GCACGUAGC____CGU_____CGCU_AGGGGAUU\n______________:|||::|||____|||_____|:||_||||||||\n______________UGUGUGUCG____GCA_____GUGA_UCCCCUAA\n3'-UUU...UCUGA_________UUAA___ACAAA____G________AGGUA...GCA-5'\n_____________|__________________________________|\n_____________72_________________________________37\n |
245 -- 251 |
38 -- 44 |
-33.2374 kcal/mol |
13.3072 kcal/mol |
4.74986 kcal/mol |
220 252@LB@ | |@LB@5'-GAG...CGUAA UGAG GC G GCGCC...UGC-3'@LB@ GCACGUAGC CGU CGCU AGGGGAUU@LB@ :|||::||| ||| |:|| ||||||||@LB@ UGUGUGUCG GCA GUGA UCCCCUAA@LB@3'-UUU...UCUGA UUAA ACAAA G AGGUA...GCA-5'@LB@ | |@LB@ 72 37@LB@@LB@@LB@Energy -15.18 kcal/mol@LB@Hybridization Energy -33.2374 kcal/mol@LB@Unfolding Energy - mRNA 13.3072 kcal/mol@LB@Unfolding Energy - sRNA 4.74986 kcal/mol@LB@@LB@Position - mRNA 221 -- 251@LB@Position - sRNA 38 -- 71@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 38 -- 44@LB@ |
126 |
0.00562 |
0.157 |
b3017 |
ftsP |
-15.30 |
0.017476 |
190 -- 242 |
38 -- 84 |
septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) |
|
_____________189____________________________________________________243\n_____________|______________________________________________________|\n5'-GAC...UUUAC____A_____U__GU___U____CGG____CAG________GGCAUC_______GCACU...CGC-3'\n______________AUGG_GCAAA_AU__CAC_CAGU____CGU___UUCAUUCA______GGGGAUU\n______________||||_|||||_|:__|||_|||:____|||___||||:|||______|||||||\n______________UACC_CGUUU_UG__GUG_GUCG____GCA___AAGUGAGU______CCCCUAA\n3'-UUU...CCCUC__________C__AU___U____UUAA___ACA_____________________AGGUA...GCA-5'\n_____________|______________________________________________________|\n_____________85_____________________________________________________37\n |
236 -- 242 |
38 -- 44 |
-40.4092 kcal/mol |
11.1124 kcal/mol |
13.9994 kcal/mol |
189 243@LB@ | |@LB@5'-GAC...UUUAC A U GU U CGG CAG GGCAUC GCACU...CGC-3'@LB@ AUGG GCAAA AU CAC CAGU CGU UUCAUUCA GGGGAUU@LB@ |||| ||||| |: ||| |||: ||| ||||:||| |||||||@LB@ UACC CGUUU UG GUG GUCG GCA AAGUGAGU CCCCUAA@LB@3'-UUU...CCCUC C AU U UUAA ACA AGGUA...GCA-5'@LB@ | |@LB@ 85 37@LB@@LB@@LB@Energy -15.30 kcal/mol@LB@Hybridization Energy -40.4092 kcal/mol@LB@Unfolding Energy - mRNA 11.1124 kcal/mol@LB@Unfolding Energy - sRNA 13.9994 kcal/mol@LB@@LB@Position - mRNA 190 -- 242@LB@Position - sRNA 38 -- 84@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 38 -- 44@LB@ |
184 |
0.00937 |
0.1776 |
b2467 |
nudK |
-13.30 |
0.054361 |
69 -- 94 |
38 -- 78 |
GDP-mannose pyrophosphatase |
|
_____________68________________________________________95\n_____________|_________________________________________|\n5'-CAA...GGCAG______GU_________________________________AUUGA...AAG-3'\n______________AAGGAC__CAUGCGGCA_______________CAGGGGAUU\n______________||:|||__||::|:|||_______________|||||||||\n______________UUUCUG__GUGUGUCGU_______________GUCCCCUAA\n3'-UUU...ACCCG______AU_________UAAGCAACAAAGUGA_________AGGUA...GCA-5'\n_____________|_________________________________________|\n_____________79________________________________________37\n |
88 -- 94 |
38 -- 44 |
-30.5001 kcal/mol |
12.4248 kcal/mol |
4.77973 kcal/mol |
68 95@LB@ | |@LB@5'-CAA...GGCAG GU AUUGA...AAG-3'@LB@ AAGGAC CAUGCGGCA CAGGGGAUU@LB@ ||:||| ||::|:||| |||||||||@LB@ UUUCUG GUGUGUCGU GUCCCCUAA@LB@3'-UUU...ACCCG AU UAAGCAACAAAGUGA AGGUA...GCA-5'@LB@ | |@LB@ 79 37@LB@@LB@@LB@Energy -13.30 kcal/mol@LB@Hybridization Energy -30.5001 kcal/mol@LB@Unfolding Energy - mRNA 12.4248 kcal/mol@LB@Unfolding Energy - sRNA 4.77973 kcal/mol@LB@@LB@Position - mRNA 69 -- 94@LB@Position - sRNA 38 -- 78@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 38 -- 44@LB@ |