61 |
0.002486 |
0.1417 |
b1487 |
ddpA |
-13.46 |
0.049908 |
168 -- 192 |
43 -- 71 |
D D-dipeptide ABC transporter periplasmic binding protein |
|
_____________167___________________________193\n_____________|_____________________________|\n5'-UCA...CCCUG________________CAG____A_____AAACU...UGA-3'\n______________GCACACAGCA___CGU____UUA_UCAGG\n______________:|||||||||___|||____|:|_|||||\n______________UGUGUGUCGU___GCA____AGU_AGUCC\n3'-UUU...UCUGA__________UAA___ACAA___G_____CCUAA...GCA-5'\n_____________|_____________________________|\n_____________72____________________________42\n |
171 -- 177 |
62 -- 68 |
-25.043 kcal/mol |
7.26137 kcal/mol |
4.32409 kcal/mol |
167 193@LB@ | |@LB@5'-UCA...CCCUG CAG A AAACU...UGA-3'@LB@ GCACACAGCA CGU UUA UCAGG@LB@ :||||||||| ||| |:| |||||@LB@ UGUGUGUCGU GCA AGU AGUCC@LB@3'-UUU...UCUGA UAA ACAA G CCUAA...GCA-5'@LB@ | |@LB@ 72 42@LB@@LB@@LB@Energy -13.46 kcal/mol@LB@Hybridization Energy -25.043 kcal/mol@LB@Unfolding Energy - mRNA 7.26137 kcal/mol@LB@Unfolding Energy - sRNA 4.32409 kcal/mol@LB@@LB@Position - mRNA 168 -- 192@LB@Position - sRNA 43 -- 71@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 62 -- 68@LB@ |
74 |
0.003066 |
0.1452 |
b0467 |
priC |
-11.71 |
0.118543 |
157 -- 193 |
43 -- 75 |
primosomal replication protein N'' |
|
_____________156___________________________________194\n_____________|_____________________________________|\n5'-GGG...AGAGU______UUUA_____A_____AUCAU_______G___UCUUA...GUU-3'\n______________GGCUAC____GCAUA_CAAUU_____UUUCAUU_AGG\n______________|:||||____:||:|_|||||_____|||||:|_|||\n______________CUGAUG____UGUGU_GUUAA_____AAAGUGA_UCC\n3'-UUU...CGUUU_______________C_____GCAAC_______G___CCUAA...GCA-5'\n_____________|_____________________________________|\n_____________76____________________________________42\n |
183 -- 189 |
47 -- 53 |
-24.815 kcal/mol |
8.75149 kcal/mol |
4.35266 kcal/mol |
156 194@LB@ | |@LB@5'-GGG...AGAGU UUUA A AUCAU G UCUUA...GUU-3'@LB@ GGCUAC GCAUA CAAUU UUUCAUU AGG@LB@ |:|||| :||:| ||||| |||||:| |||@LB@ CUGAUG UGUGU GUUAA AAAGUGA UCC@LB@3'-UUU...CGUUU C GCAAC G CCUAA...GCA-5'@LB@ | |@LB@ 76 42@LB@@LB@@LB@Energy -11.71 kcal/mol@LB@Hybridization Energy -24.815 kcal/mol@LB@Unfolding Energy - mRNA 8.75149 kcal/mol@LB@Unfolding Energy - sRNA 4.35266 kcal/mol@LB@@LB@Position - mRNA 157 -- 193@LB@Position - sRNA 43 -- 75@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 47 -- 53@LB@ |
78 |
0.003218 |
0.1452 |
b1641 |
slyB |
-13.21 |
0.056987 |
203 -- 235 |
43 -- 75 |
outer membrane lipoprotein |
|
_____________202_________________________________236\n_____________|___________________________________|\n5'-CCG...UCAAU_____A___________G_________AUGG____UCUGU...AAG-3'\n______________GAUUA_ACGC_GU_AUU_GUUGUUUCA____UAGG\n______________||:||_||:|_|:_|||_|||||||||____:|||\n______________CUGAU_UGUG_CG_UAA_CAACAAAGU____GUCC\n3'-UUU...CGUUU_____G____U__U___G_________GA______CCUAA...GCA-5'\n_____________|___________________________________|\n_____________76__________________________________42\n |
221 -- 227 |
49 -- 55 |
-26.1882 kcal/mol |
8.63028 kcal/mol |
4.35266 kcal/mol |
202 236@LB@ | |@LB@5'-CCG...UCAAU A G AUGG UCUGU...AAG-3'@LB@ GAUUA ACGC GU AUU GUUGUUUCA UAGG@LB@ ||:|| ||:| |: ||| ||||||||| :|||@LB@ CUGAU UGUG CG UAA CAACAAAGU GUCC@LB@3'-UUU...CGUUU G U U G GA CCUAA...GCA-5'@LB@ | |@LB@ 76 42@LB@@LB@@LB@Energy -13.21 kcal/mol@LB@Hybridization Energy -26.1882 kcal/mol@LB@Unfolding Energy - mRNA 8.63028 kcal/mol@LB@Unfolding Energy - sRNA 4.35266 kcal/mol@LB@@LB@Position - mRNA 203 -- 235@LB@Position - sRNA 43 -- 75@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 49 -- 55@LB@ |
114 |
0.005004 |
0.1545 |
b0025 |
ribF |
-11.63 |
0.123109 |
210 -- 237 |
43 -- 71 |
bifunctional riboflavin kinase/FAD synthetase |
|
_____________209___________________________238\n_____________|_____________________________|\n5'-UGG...AGCUG__________UACAUAAUC____GC____CCCCG...GCG-3'\n______________AUACGCGGCA__________UCA__CAGG\n______________|:||:|:|||__________|||__||||\n______________UGUGUGUCGU__________AGU__GUCC\n3'-UUU...UCUGA__________UAAGCAACAA___GA____CCUAA...GCA-5'\n_____________|_____________________________|\n_____________72____________________________42\n |
213 -- 219 |
62 -- 68 |
-21.1915 kcal/mol |
5.23887 kcal/mol |
4.32409 kcal/mol |
209 238@LB@ | |@LB@5'-UGG...AGCUG UACAUAAUC GC CCCCG...GCG-3'@LB@ AUACGCGGCA UCA CAGG@LB@ |:||:|:||| ||| ||||@LB@ UGUGUGUCGU AGU GUCC@LB@3'-UUU...UCUGA UAAGCAACAA GA CCUAA...GCA-5'@LB@ | |@LB@ 72 42@LB@@LB@@LB@Energy -11.63 kcal/mol@LB@Hybridization Energy -21.1915 kcal/mol@LB@Unfolding Energy - mRNA 5.23887 kcal/mol@LB@Unfolding Energy - sRNA 4.32409 kcal/mol@LB@@LB@Position - mRNA 210 -- 237@LB@Position - sRNA 43 -- 71@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 62 -- 68@LB@ |
140 |
0.006445 |
0.1605 |
b0325 |
yahK |
-13.93 |
0.038719 |
67 -- 79 |
43 -- 55 |
broad specificity NADPH-dependent aldehyde reductase Zn-containing |
|
_____________66____________80\n_____________|_____________|\n5'-UUA...UGCUC_____________CUCGC...AAA-3'\n______________UGUUUCAUUCAGG\n______________|||||||:|||||\n______________ACAAAGUGAGUCC\n3'-UUU...AAGCA_____________CCUAA...GCA-5'\n_____________|_____________|\n_____________56____________42\n |
73 -- 79 |
43 -- 49 |
-18.9036 kcal/mol |
3.47822 kcal/mol |
1.49792 kcal/mol |
66 80@LB@ | |@LB@5'-UUA...UGCUC CUCGC...AAA-3'@LB@ UGUUUCAUUCAGG@LB@ |||||||:|||||@LB@ ACAAAGUGAGUCC@LB@3'-UUU...AAGCA CCUAA...GCA-5'@LB@ | |@LB@ 56 42@LB@@LB@@LB@Energy -13.93 kcal/mol@LB@Hybridization Energy -18.9036 kcal/mol@LB@Unfolding Energy - mRNA 3.47822 kcal/mol@LB@Unfolding Energy - sRNA 1.49792 kcal/mol@LB@@LB@Position - mRNA 67 -- 79@LB@Position - sRNA 43 -- 55@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 43 -- 49@LB@ |
168 |
0.008282 |
0.1723 |
b3822 |
recQ |
-12.50 |
0.081546 |
124 -- 155 |
43 -- 77 |
ATP-dependent DNA helicase |
|
_____________123___________________________________156\n_____________|_____________________________________|\n5'-CGC...UCUCA_______AAA____U_______C_________G____CGCUG...UUA-3'\n______________GAGACUA___GCAU_GCAGUUU______UCGC_CAGG\n______________:||||||___:||:_|||:||:______||:|_||||\n______________UUCUGAU___UGUG_CGUUAAG______AGUG_GUCC\n3'-UUU...CCCGU_______G______U_______CAACAA____A____CCUAA...GCA-5'\n_____________|_____________________________________|\n_____________78____________________________________42\n |
139 -- 145 |
58 -- 64 |
-25.7534 kcal/mol |
8.90299 kcal/mol |
4.3531 kcal/mol |
123 156@LB@ | |@LB@5'-CGC...UCUCA AAA U C G CGCUG...UUA-3'@LB@ GAGACUA GCAU GCAGUUU UCGC CAGG@LB@ :|||||| :||: |||:||: ||:| ||||@LB@ UUCUGAU UGUG CGUUAAG AGUG GUCC@LB@3'-UUU...CCCGU G U CAACAA A CCUAA...GCA-5'@LB@ | |@LB@ 78 42@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -25.7534 kcal/mol@LB@Unfolding Energy - mRNA 8.90299 kcal/mol@LB@Unfolding Energy - sRNA 4.3531 kcal/mol@LB@@LB@Position - mRNA 124 -- 155@LB@Position - sRNA 43 -- 77@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 58 -- 64@LB@ |
179 |
0.009001 |
0.1747 |
b2725 |
hycA |
-11.58 |
0.125812 |
239 -- 264 |
43 -- 70 |
regulator of the transcriptional regulator FhlA |
|
_____________238_____________________________265\n_____________|_______________________________|\n5'-UUA...UACAU__________CA____________CUA____ACCAG...AGG-3'\n______________CGCACAGCGG__UCG_____UCGC___CAGG\n______________|:||||||::__|||_____||:|___||||\n______________GUGUGUCGUU__AGC_____AGUG___GUCC\n3'-UUU...CUGAU__________A____AACAA____A______CCUAA...GCA-5'\n_____________|_______________________________|\n_____________71______________________________42\n |
242 -- 248 |
61 -- 67 |
-23.0547 kcal/mol |
7.15003 kcal/mol |
4.32399 kcal/mol |
238 265@LB@ | |@LB@5'-UUA...UACAU CA CUA ACCAG...AGG-3'@LB@ CGCACAGCGG UCG UCGC CAGG@LB@ |:||||||:: ||| ||:| ||||@LB@ GUGUGUCGUU AGC AGUG GUCC@LB@3'-UUU...CUGAU A AACAA A CCUAA...GCA-5'@LB@ | |@LB@ 71 42@LB@@LB@@LB@Energy -11.58 kcal/mol@LB@Hybridization Energy -23.0547 kcal/mol@LB@Unfolding Energy - mRNA 7.15003 kcal/mol@LB@Unfolding Energy - sRNA 4.32399 kcal/mol@LB@@LB@Position - mRNA 239 -- 264@LB@Position - sRNA 43 -- 70@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 61 -- 67@LB@ |
68 |
0.002787 |
0.1417 |
b3001 |
gpr |
-15.31 |
0.017381 |
36 -- 59 |
44 -- 69 |
L-glyceraldehyde 3-phosphate reductase |
|
_____________35__________________________60\n_____________|___________________________|\n5'-UCC...GUUAA________________CAC________UUGGU...GGC-3'\n______________ACGCGGCA__UCGUUG___UC_CUCAG\n______________||:|:|||__||||||___||_|||||\n______________UGUGUCGU__AGCAAC___AG_GAGUC\n3'-UUU...UGAUG________UA______AA___U_____CCCUA...GCA-5'\n_____________|___________________________|\n_____________70__________________________43\n |
37 -- 43 |
62 -- 68 |
-25.5933 kcal/mol |
6.1914 kcal/mol |
4.09554 kcal/mol |
35 60@LB@ | |@LB@5'-UCC...GUUAA CAC UUGGU...GGC-3'@LB@ ACGCGGCA UCGUUG UC CUCAG@LB@ ||:|:||| |||||| || |||||@LB@ UGUGUCGU AGCAAC AG GAGUC@LB@3'-UUU...UGAUG UA AA U CCCUA...GCA-5'@LB@ | |@LB@ 70 43@LB@@LB@@LB@Energy -15.31 kcal/mol@LB@Hybridization Energy -25.5933 kcal/mol@LB@Unfolding Energy - mRNA 6.1914 kcal/mol@LB@Unfolding Energy - sRNA 4.09554 kcal/mol@LB@@LB@Position - mRNA 36 -- 59@LB@Position - sRNA 44 -- 69@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 62 -- 68@LB@ |
86 |
0.003687 |
0.1509 |
b0774 |
bioA |
-10.95 |
0.166636 |
92 -- 152 |
44 -- 98 |
7 8-diaminopelargonic acid synthase PLP-dependent |
|
_____________91_____________________________________________________________153\n_____________|______________________________________________________________|\n5'-ACG...ACAAU_____G______C____A__CAU______UCUCCAAA___U__UU_________A_______UGUAG...AAG-3'\n______________GUCCA_CGUGGG_GGUG_GC___GGGGCU________ACG_GU__UUUGUUGUU__AUUCGG\n______________|:|||_||||||_|:||_||___::|:||________||:_|:__||:||||||__|:||:|\n______________CGGGU_GCACCC_CUAC_CG___UUCUGA________UGU_CG__AAGCAACAA__UGAGUC\n____3'-UUUUUUU_____A______U____C__U________UGUG__________UU_________AG______CCCUA...GCA-5'\n_____________|______________________________________________________________|\n_____________99_____________________________________________________________43\n |
139 -- 145 |
52 -- 58 |
-48.0349 kcal/mol |
20.1482 kcal/mol |
16.9429 kcal/mol |
91 153@LB@ | |@LB@5'-ACG...ACAAU G C A CAU UCUCCAAA U UU A UGUAG...AAG-3'@LB@ GUCCA CGUGGG GGUG GC GGGGCU ACG GU UUUGUUGUU AUUCGG@LB@ |:||| |||||| |:|| || ::|:|| ||: |: ||:|||||| |:||:|@LB@ CGGGU GCACCC CUAC CG UUCUGA UGU CG AAGCAACAA UGAGUC@LB@ 3'-UUUUUUU A U C U UGUG UU AG CCCUA...GCA-5'@LB@ | |@LB@ 99 43@LB@@LB@@LB@Energy -10.95 kcal/mol@LB@Hybridization Energy -48.0349 kcal/mol@LB@Unfolding Energy - mRNA 20.1482 kcal/mol@LB@Unfolding Energy - sRNA 16.9429 kcal/mol@LB@@LB@Position - mRNA 92 -- 152@LB@Position - sRNA 44 -- 98@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 52 -- 58@LB@ |
93 |
0.004161 |
0.1538 |
b4221 |
tamB |
-11.98 |
0.104509 |
154 -- 185 |
44 -- 78 |
translocation and assembly module for autotransporter export inner membrane subunit |
|
_____________153__________________________________186\n_____________|____________________________________|\n5'-ACC...CGGAU______GA____________ACA________A____UCUGG...AUC-3'\n______________AAAGAC___ACACGG__GUU____GUUUUAC_UCGG\n______________||||||___||||:|__:||____||||:||_||:|\n______________UUUCUG___UGUGUC__UAA____CAAAGUG_AGUC\n3'-UUU...ACCCG______AUG______GU___GCAA____________CCCUA...GCA-5'\n_____________|____________________________________|\n_____________79___________________________________43\n |
174 -- 180 |
48 -- 54 |
-22.2219 kcal/mol |
6.10136 kcal/mol |
4.13875 kcal/mol |
153 186@LB@ | |@LB@5'-ACC...CGGAU GA ACA A UCUGG...AUC-3'@LB@ AAAGAC ACACGG GUU GUUUUAC UCGG@LB@ |||||| ||||:| :|| ||||:|| ||:|@LB@ UUUCUG UGUGUC UAA CAAAGUG AGUC@LB@3'-UUU...ACCCG AUG GU GCAA CCCUA...GCA-5'@LB@ | |@LB@ 79 43@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -22.2219 kcal/mol@LB@Unfolding Energy - mRNA 6.10136 kcal/mol@LB@Unfolding Energy - sRNA 4.13875 kcal/mol@LB@@LB@Position - mRNA 154 -- 185@LB@Position - sRNA 44 -- 78@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 48 -- 54@LB@ |