41 |
0.01426 |
0.2859 |
ct_458 |
YhhY |
-4.46 |
0.446972 |
238 -- 245 |
81 -- 88 |
acetyltransferase |
|
_____________237______246\n_____________|________|\n5'-UUA...UCGGU________CCUGA...GAG-3'\n______________AUACGGUU\n______________||||||:|\n______________UAUGCCGA\n3'-UUU...GCCUC________UUGAG...GAA-5'\n_____________|________|\n_____________89_______80\n |
239 -- 245 |
81 -- 87 |
-8.66821 kcal/mol |
3.10635 kcal/mol |
1.09753 kcal/mol |
237 246@LB@ | |@LB@5'-UUA...UCGGU CCUGA...GAG-3'@LB@ AUACGGUU@LB@ ||||||:|@LB@ UAUGCCGA@LB@3'-UUU...GCCUC UUGAG...GAA-5'@LB@ | |@LB@ 89 80@LB@@LB@@LB@Energy -4.46 kcal/mol@LB@Hybridization Energy -8.66821 kcal/mol@LB@Unfolding Energy - mRNA 3.10635 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 238 -- 245@LB@Position - sRNA 81 -- 88@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 81 -- 87@LB@ |
42 |
0.01617 |
0.29 |
ct_610 |
N/A |
-8.69 |
0.058803 |
15 -- 22 |
80 -- 87 |
virulence protein CADD |
|
_____________14_______23\n_____________|________|\n5'-GAU...GCAGU________UUGUU...GGG-3'\n______________UGCGGCUG\n______________|:|||||:\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
16 -- 22 |
80 -- 86 |
-11.8172 kcal/mol |
2.02516 kcal/mol |
1.09752 kcal/mol |
14 23@LB@ | |@LB@5'-GAU...GCAGU UUGUU...GGG-3'@LB@ UGCGGCUG@LB@ |:|||||:@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -8.69 kcal/mol@LB@Hybridization Energy -11.8172 kcal/mol@LB@Unfolding Energy - mRNA 2.02516 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 15 -- 22@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 80 -- 86@LB@ |
43 |
0.01649 |
0.29 |
ct_590 |
N/A |
-9.68 |
0.033714 |
159 -- 170 |
17 -- 28 |
|
|
_____________158__________171\n_____________|____________|\n5'-AGU...CAAUU____________AAAGG...UCA-3'\n______________UUAUUCCAUGGU\n______________:||||||||||:\n______________GAUAAGGUACCG\n3'-UUU...UCUUC____________CAAUC...GAA-5'\n_____________|____________|\n_____________29___________16\n |
164 -- 170 |
17 -- 23 |
-16.2126 kcal/mol |
1.90936 kcal/mol |
4.62088 kcal/mol |
158 171@LB@ | |@LB@5'-AGU...CAAUU AAAGG...UCA-3'@LB@ UUAUUCCAUGGU@LB@ :||||||||||:@LB@ GAUAAGGUACCG@LB@3'-UUU...UCUUC CAAUC...GAA-5'@LB@ | |@LB@ 29 16@LB@@LB@@LB@Energy -9.68 kcal/mol@LB@Hybridization Energy -16.2126 kcal/mol@LB@Unfolding Energy - mRNA 1.90936 kcal/mol@LB@Unfolding Energy - sRNA 4.62088 kcal/mol@LB@@LB@Position - mRNA 159 -- 170@LB@Position - sRNA 17 -- 28@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 17 -- 23@LB@ |
44 |
0.01666 |
0.29 |
ct_438 |
rs7 |
-6.33 |
0.200160 |
214 -- 223 |
79 -- 88 |
30S ribosomal protein S7 |
|
_____________213________224\n_____________|__________|\n5'-GCA...ACGAC__________GAAGA...ACG-3'\n______________AUGCGGCUGA\n______________||:|||||:|\n______________UAUGCCGAUU\n3'-UUU...GCCUC__________GAGGU...GAA-5'\n_____________|__________|\n_____________89_________78\n |
217 -- 223 |
79 -- 85 |
-13.0034 kcal/mol |
5.57631 kcal/mol |
1.09753 kcal/mol |
213 224@LB@ | |@LB@5'-GCA...ACGAC GAAGA...ACG-3'@LB@ AUGCGGCUGA@LB@ ||:|||||:|@LB@ UAUGCCGAUU@LB@3'-UUU...GCCUC GAGGU...GAA-5'@LB@ | |@LB@ 89 78@LB@@LB@@LB@Energy -6.33 kcal/mol@LB@Hybridization Energy -13.0034 kcal/mol@LB@Unfolding Energy - mRNA 5.57631 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 214 -- 223@LB@Position - sRNA 79 -- 88@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 79 -- 85@LB@ |
45 |
0.01671 |
0.29 |
ct_469 |
N/A |
-9.81 |
0.031394 |
4 -- 20 |
17 -- 35 |
|
|
_____________3___________________21\n_____________|___________________|\n________5'-AUU___________________AACCU...UCU-3'\n______________UCAGAAGCU_UUUC_UGGU\n______________|||||||||_||:|_|||:\n______________AGUCUUCGA_AAGG_ACCG\n3'-UUU...AUCUC_________U____U____CAAUC...GAA-5'\n_____________|___________________|\n_____________36__________________16\n |
6 -- 12 |
27 -- 33 |
-19.4129 kcal/mol |
4.62874 kcal/mol |
4.9781 kcal/mol |
3 21@LB@ | |@LB@ 5'-AUU AACCU...UCU-3'@LB@ UCAGAAGCU UUUC UGGU@LB@ ||||||||| ||:| |||:@LB@ AGUCUUCGA AAGG ACCG@LB@3'-UUU...AUCUC U U CAAUC...GAA-5'@LB@ | |@LB@ 36 16@LB@@LB@@LB@Energy -9.81 kcal/mol@LB@Hybridization Energy -19.4129 kcal/mol@LB@Unfolding Energy - mRNA 4.62874 kcal/mol@LB@Unfolding Energy - sRNA 4.9781 kcal/mol@LB@@LB@Position - mRNA 4 -- 20@LB@Position - sRNA 17 -- 35@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 27 -- 33@LB@ |
46 |
0.01681 |
0.29 |
ct_425 |
N/A |
-8.97 |
0.050526 |
259 -- 284 |
2 -- 23 |
|
|
_____________258_________________________285\n_____________|___________________________|\n5'-CUU...UUCUA__________UC_____UUCU______AAUUU...AAG-3'\n______________CC_UGGCGUU__GAAUA____UCAGCU\n______________||_|||||||__|||||____:||:||\n______________GG_ACCGCAA__CUUAU____GGUUGA\n3'-UUU...GAUAA__U_______U________________A-5'\n_____________|___________________________|\n_____________24__________________________1\n |
261 -- 267 |
14 -- 20 |
-21.0816 kcal/mol |
4.01638 kcal/mol |
8.09761 kcal/mol |
258 285@LB@ | |@LB@5'-CUU...UUCUA UC UUCU AAUUU...AAG-3'@LB@ CC UGGCGUU GAAUA UCAGCU@LB@ || ||||||| ||||| :||:||@LB@ GG ACCGCAA CUUAU GGUUGA@LB@3'-UUU...GAUAA U U A-5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -8.97 kcal/mol@LB@Hybridization Energy -21.0816 kcal/mol@LB@Unfolding Energy - mRNA 4.01638 kcal/mol@LB@Unfolding Energy - sRNA 8.09761 kcal/mol@LB@@LB@Position - mRNA 259 -- 284@LB@Position - sRNA 2 -- 23@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 14 -- 20@LB@ |
47 |
0.01707 |
0.29 |
ct_577 |
N/A |
-4.79 |
0.394783 |
124 -- 141 |
41 -- 59 |
|
|
_____________123_________________142\n_____________|___________________|\n5'-GAU...CAAGC_______CCUAA_______AAAAG...AAU-3'\n______________CUCCUCU______AAACAC\n______________|:||:||______||||||\n______________GGGGGGA______UUUGUG\n3'-UUU...CUGAA_______CACAUG______AUCUC...GAA-5'\n_____________|___________________|\n_____________60__________________40\n |
124 -- 130 |
53 -- 59 |
-14.9438 kcal/mol |
1.33474 kcal/mol |
8.82318 kcal/mol |
123 142@LB@ | |@LB@5'-GAU...CAAGC CCUAA AAAAG...AAU-3'@LB@ CUCCUCU AAACAC@LB@ |:||:|| ||||||@LB@ GGGGGGA UUUGUG@LB@3'-UUU...CUGAA CACAUG AUCUC...GAA-5'@LB@ | |@LB@ 60 40@LB@@LB@@LB@Energy -4.79 kcal/mol@LB@Hybridization Energy -14.9438 kcal/mol@LB@Unfolding Energy - mRNA 1.33474 kcal/mol@LB@Unfolding Energy - sRNA 8.82318 kcal/mol@LB@@LB@Position - mRNA 124 -- 141@LB@Position - sRNA 41 -- 59@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 53 -- 59@LB@ |
48 |
0.01795 |
0.29 |
ct_863 |
N/A |
-9.34 |
0.040980 |
222 -- 242 |
40 -- 60 |
|
|
_____________221___________________243\n_____________|_____________________|\n5'-AAU...CCCUU______G_ACCG_________UCUCU...UUC-3'\n______________UCCUCC_U____ACAAACGCU\n______________|||:||_|____||||||:||\n______________AGGGGG_A____UGUUUGUGA\n3'-UUU...ACUGA______G_CACA_________UCUCA...GAA-5'\n_____________|_____________________|\n_____________61____________________39\n |
235 -- 241 |
41 -- 47 |
-20.8327 kcal/mol |
1.69613 kcal/mol |
9.79654 kcal/mol |
221 243@LB@ | |@LB@5'-AAU...CCCUU G ACCG UCUCU...UUC-3'@LB@ UCCUCC U ACAAACGCU@LB@ |||:|| | ||||||:||@LB@ AGGGGG A UGUUUGUGA@LB@3'-UUU...ACUGA G CACA UCUCA...GAA-5'@LB@ | |@LB@ 61 39@LB@@LB@@LB@Energy -9.34 kcal/mol@LB@Hybridization Energy -20.8327 kcal/mol@LB@Unfolding Energy - mRNA 1.69613 kcal/mol@LB@Unfolding Energy - sRNA 9.79654 kcal/mol@LB@@LB@Position - mRNA 222 -- 242@LB@Position - sRNA 40 -- 60@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 41 -- 47@LB@ |
49 |
0.01821 |
0.29 |
ct_733 |
N/A |
-8.44 |
0.067485 |
96 -- 102 |
80 -- 86 |
|
|
_____________95______103\n_____________|_______|\n5'-AUG...UGCCA_______UUGAU...CUA-3'\n______________GCGGCUA\n______________:||||||\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
96 -- 102 |
80 -- 86 |
-11.4095 kcal/mol |
1.90152 kcal/mol |
1.06449 kcal/mol |
95 103@LB@ | |@LB@5'-AUG...UGCCA UUGAU...CUA-3'@LB@ GCGGCUA@LB@ :||||||@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -8.44 kcal/mol@LB@Hybridization Energy -11.4095 kcal/mol@LB@Unfolding Energy - mRNA 1.90152 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 96 -- 102@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 80 -- 86@LB@ |
50 |
0.01829 |
0.29 |
ct_588 |
rbsU |
-10.49 |
0.021035 |
31 -- 46 |
21 -- 34 |
serine phosphatase RsbU |
|
_____________30_______________47\n_____________|________________|\n5'-GUC...GGGUC________CU______AGAUU...UCC-3'\n______________CAGAAGCU__AUUCCA\n______________||||||||__||||||\n______________GUCUUCGA__UAAGGU\n3'-UUU...UCUCA________________ACCGC...GAA-5'\n_____________|________________|\n_____________35_______________20\n |
32 -- 38 |
27 -- 33 |
-17.905 kcal/mol |
2.68182 kcal/mol |
4.73132 kcal/mol |
30 47@LB@ | |@LB@5'-GUC...GGGUC CU AGAUU...UCC-3'@LB@ CAGAAGCU AUUCCA@LB@ |||||||| ||||||@LB@ GUCUUCGA UAAGGU@LB@3'-UUU...UCUCA ACCGC...GAA-5'@LB@ | |@LB@ 35 20@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -17.905 kcal/mol@LB@Unfolding Energy - mRNA 2.68182 kcal/mol@LB@Unfolding Energy - sRNA 4.73132 kcal/mol@LB@@LB@Position - mRNA 31 -- 46@LB@Position - sRNA 21 -- 34@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 27 -- 33@LB@ |