| 147 |
0.005701 |
0.1366 |
b1622 |
malY |
-7.52 |
0.364460 |
44 -- 91 |
35 -- 85 |
PLP-dependent beta-cystathionase and maltose regulon regulator |
|
_____________43____________________________________________________92\n_____________|_____________________________________________________|\n5'-UCG...GAUAU____C____UAA_______GCACU__________CAAUC___________C__AGUAC...UCA-3'\n______________GUCG_UUGU___UGUGCAG_________GAAGGA_____GGGCAAU_UGG_GU\n______________:||:_||||___|:|||||_________:|||||_____:|:||||_|||_|:\n______________UAGU_AACA___AUACGUC_________UUUCCU_____UCUGUUA_ACC_CG\n3'-UUU...AUGCU____U____CG________AUUAAGUUU______UCAU________U___U__CGUUG...ACG-5'\n_____________|_____________________________________________________|\n_____________86____________________________________________________34\n |
79 -- 85 |
42 -- 48 |
-29.3049 kcal/mol |
13.5755 kcal/mol |
8.20283 kcal/mol |
43 92@LB@ | |@LB@5'-UCG...GAUAU C UAA GCACU CAAUC C AGUAC...UCA-3'@LB@ GUCG UUGU UGUGCAG GAAGGA GGGCAAU UGG GU@LB@ :||: |||| |:||||| :||||| :|:|||| ||| |:@LB@ UAGU AACA AUACGUC UUUCCU UCUGUUA ACC CG@LB@3'-UUU...AUGCU U CG AUUAAGUUU UCAU U U CGUUG...ACG-5'@LB@ | |@LB@ 86 34@LB@@LB@@LB@Energy -7.52 kcal/mol@LB@Hybridization Energy -29.3049 kcal/mol@LB@Unfolding Energy - mRNA 13.5755 kcal/mol@LB@Unfolding Energy - sRNA 8.20283 kcal/mol@LB@@LB@Position - mRNA 44 -- 91@LB@Position - sRNA 35 -- 85@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 58 |
0.0009751 |
0.05816 |
b3809 |
dapF |
-9.70 |
0.129467 |
46 -- 52 |
1 -- 7 |
diaminopimelate epimerase |
|
_____________45______53\n_____________|_______|\n5'-UCU...UUUCC_______AGAUA...UGG-3'\n______________CGCCUGC\n______________|:|||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
46 -- 52 |
1 -- 7 |
-13.4276 kcal/mol |
1.39772 kcal/mol |
2.34039 kcal/mol |
45 53@LB@ | |@LB@5'-UCU...UUUCC AGAUA...UGG-3'@LB@ CGCCUGC@LB@ |:|||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -13.4276 kcal/mol@LB@Unfolding Energy - mRNA 1.39772 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 46 -- 52@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 62 |
0.001027 |
0.05816 |
b0717 |
ybgP |
-6.75 |
0.488398 |
48 -- 57 |
53 -- 62 |
putative periplasmic pilin chaperone |
b3047 |
_____________47_________58\n_____________|__________|\n5'-GCG...GUUGG__________CAUGC...CCA-3'\n______________CGAGGAAGGA\n______________|:|::|||||\n______________GUUUUUUCCU\n3'-UUU...AUUAA__________UCAUU...ACG-5'\n_____________|__________|\n_____________63_________52\n |
51 -- 57 |
53 -- 59 |
-10.1576 kcal/mol |
0.982686 kcal/mol |
2.4254 kcal/mol |
47 58@LB@ | |@LB@5'-GCG...GUUGG CAUGC...CCA-3'@LB@ CGAGGAAGGA@LB@ |:|::|||||@LB@ GUUUUUUCCU@LB@3'-UUU...AUUAA UCAUU...ACG-5'@LB@ | |@LB@ 63 52@LB@@LB@@LB@Energy -6.75 kcal/mol@LB@Hybridization Energy -10.1576 kcal/mol@LB@Unfolding Energy - mRNA 0.982686 kcal/mol@LB@Unfolding Energy - sRNA 2.4254 kcal/mol@LB@@LB@Position - mRNA 48 -- 57@LB@Position - sRNA 53 -- 62@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 6 |
5.595e-06 |
0.003285 |
b2048 |
cpsG |
-15.91 |
0.002276 |
49 -- 82 |
20 -- 54 |
phosphomannomutase |
|
_____________48__________________________________83\n_____________|___________________________________|\n5'-GGG...AUCUC_________________U____UU___GG______ACGGA...GCG-3'\n______________GAAG_AGGAUGAUGUGG_GCGU__CGC__AUCGCU\n______________||||_|:||::||:|||_|||:__|||__||||||\n______________CUUC_UUCUGUUAUACC_CGCG__GCG__UAGCGA\n3'-UUU...UUUUC____A____________U____UU___GG______ACUGC...ACG-5'\n_____________|___________________________________|\n_____________55__________________________________19\n |
54 -- 60 |
42 -- 48 |
-40.4755 kcal/mol |
10.8622 kcal/mol |
13.7092 kcal/mol |
48 83@LB@ | |@LB@5'-GGG...AUCUC U UU GG ACGGA...GCG-3'@LB@ GAAG AGGAUGAUGUGG GCGU CGC AUCGCU@LB@ |||| |:||::||:||| |||: ||| ||||||@LB@ CUUC UUCUGUUAUACC CGCG GCG UAGCGA@LB@3'-UUU...UUUUC A U UU GG ACUGC...ACG-5'@LB@ | |@LB@ 55 19@LB@@LB@@LB@Energy -15.91 kcal/mol@LB@Hybridization Energy -40.4755 kcal/mol@LB@Unfolding Energy - mRNA 10.8622 kcal/mol@LB@Unfolding Energy - sRNA 13.7092 kcal/mol@LB@@LB@Position - mRNA 49 -- 82@LB@Position - sRNA 20 -- 54@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 43 |
0.0004177 |
0.03347 |
b3652 |
recG |
-10.52 |
0.082371 |
49 -- 71 |
17 -- 38 |
ATP-dependent DNA helicase |
|
_____________48______________________72\n_____________|_______________________|\n5'-CAA...AAGCA____AA_________________AGGCG...UGC-3'\n______________GAGC__CAACGCCUGUUGUUUGA\n______________||||__|||||||::|:|:||||\n______________CUCG__GUUGCGGGUAGCGAACU\n3'-UUU...UAUAC____C__________________GCAAC...ACG-5'\n_____________|_______________________|\n_____________39______________________16\n |
63 -- 69 |
19 -- 25 |
-31.2627 kcal/mol |
8.52631 kcal/mol |
12.2147 kcal/mol |
48 72@LB@ | |@LB@5'-CAA...AAGCA AA AGGCG...UGC-3'@LB@ GAGC CAACGCCUGUUGUUUGA@LB@ |||| |||||||::|:|:||||@LB@ CUCG GUUGCGGGUAGCGAACU@LB@3'-UUU...UAUAC C GCAAC...ACG-5'@LB@ | |@LB@ 39 16@LB@@LB@@LB@Energy -10.52 kcal/mol@LB@Hybridization Energy -31.2627 kcal/mol@LB@Unfolding Energy - mRNA 8.52631 kcal/mol@LB@Unfolding Energy - sRNA 12.2147 kcal/mol@LB@@LB@Position - mRNA 49 -- 71@LB@Position - sRNA 17 -- 38@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 19 -- 25@LB@ |
| 140 |
0.005308 |
0.1336 |
b0055 |
djlA |
-7.67 |
0.341620 |
49 -- 94 |
41 -- 89 |
membrane-anchored DnaK co-chaperone DNA-binding protein |
|
_____________48_________________________________________________95\n_____________|__________________________________________________|\n5'-GAC...GAAUA__________G______G___C_GC___G__U__C_______U_______CAAAU...UUG-3'\n______________GCG__UCAGU_GUGUUA_GCA_G__AUU_AA_GA___AGGUA_GAUAAUG\n______________:||__|||:|_|||:||_|||_|__|||_||_:|___|:|||_||:|||:\n______________UGC__AGUUA_CACGAU_CGU_C__UAA_UU_UU___UUCAU_CUGUUAU\n3'-UUU...CAGCA___UU_____A______A_____AU___G__U__UCC_____U_______ACCUC...ACG-5'\n_____________|__________________________________________________|\n_____________90_________________________________________________40\n |
88 -- 94 |
41 -- 47 |
-26.3807 kcal/mol |
12.8315 kcal/mol |
5.88014 kcal/mol |
48 95@LB@ | |@LB@5'-GAC...GAAUA G G C GC G U C U CAAAU...UUG-3'@LB@ GCG UCAGU GUGUUA GCA G AUU AA GA AGGUA GAUAAUG@LB@ :|| |||:| |||:|| ||| | ||| || :| |:||| ||:|||:@LB@ UGC AGUUA CACGAU CGU C UAA UU UU UUCAU CUGUUAU@LB@3'-UUU...CAGCA UU A A AU G U UCC U ACCUC...ACG-5'@LB@ | |@LB@ 90 40@LB@@LB@@LB@Energy -7.67 kcal/mol@LB@Hybridization Energy -26.3807 kcal/mol@LB@Unfolding Energy - mRNA 12.8315 kcal/mol@LB@Unfolding Energy - sRNA 5.88014 kcal/mol@LB@@LB@Position - mRNA 49 -- 94@LB@Position - sRNA 41 -- 89@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 71 |
0.001416 |
0.07026 |
b0880 |
cspD |
-7.58 |
0.355655 |
51 -- 57 |
1 -- 7 |
inhibitor of DNA replication cold shock protein homolog |
|
_____________50______58\n_____________|_______|\n5'-AUC...AUUCA_______CCCUU...CCA-3'\n______________UACCUGC\n______________:||||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
51 -- 57 |
1 -- 7 |
-10.3464 kcal/mol |
0.429757 kcal/mol |
2.34039 kcal/mol |
50 58@LB@ | |@LB@5'-AUC...AUUCA CCCUU...CCA-3'@LB@ UACCUGC@LB@ :||||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -7.58 kcal/mol@LB@Hybridization Energy -10.3464 kcal/mol@LB@Unfolding Energy - mRNA 0.429757 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 51 -- 57@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 137 |
0.005185 |
0.1333 |
b2256 |
arnD |
-10.61 |
0.078275 |
62 -- 106 |
20 -- 56 |
undecaprenyl phosphate-alpha-L-ara4FN deformylase |
|
_____________61____________________________________________107\n_____________|_____________________________________________|\n5'-UUC...AUAUC____C____A___UC___AACC____AUCC__________C____GCCUG...AGG-3'\n______________AGGA_GUAG_GCA__GUA____GAGC____GCAAUGCCCA_CGCU\n______________||||_|||:_:||__:||____||||____||||:|||||_||||\n______________UCCU_CAUU_UGU__UAU____CUCG____CGUUGCGGGU_GCGA\n3'-UUU...UUUUU____U____C________AC____________________A____ACUGC...ACG-5'\n_____________|_____________________________________________|\n_____________57____________________________________________19\n |
95 -- 101 |
25 -- 31 |
-37.0072 kcal/mol |
12.6417 kcal/mol |
13.7538 kcal/mol |
61 107@LB@ | |@LB@5'-UUC...AUAUC C A UC AACC AUCC C GCCUG...AGG-3'@LB@ AGGA GUAG GCA GUA GAGC GCAAUGCCCA CGCU@LB@ |||| |||: :|| :|| |||| ||||:||||| ||||@LB@ UCCU CAUU UGU UAU CUCG CGUUGCGGGU GCGA@LB@3'-UUU...UUUUU U C AC A ACUGC...ACG-5'@LB@ | |@LB@ 57 19@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -37.0072 kcal/mol@LB@Unfolding Energy - mRNA 12.6417 kcal/mol@LB@Unfolding Energy - sRNA 13.7538 kcal/mol@LB@@LB@Position - mRNA 62 -- 106@LB@Position - sRNA 20 -- 56@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 11 |
1.858e-05 |
0.005627 |
b4015 |
aceA |
-14.28 |
0.007567 |
72 -- 114 |
4 -- 39 |
isocitrate lyase |
|
_____________71___________________________________________115\n_____________|____________________________________________|\n5'-UUG...UCCCA_______UUUGAC______G____________GAA__GA_____ACUUC...UGA-3'\n______________GGGGCGU______GAUGCC_CA_CGCUUGAUG___CA__UCACC\n______________||:|||:______:|:|||_||_|||||||:|___||__|||||\n______________CCUCGCG______UUGCGG_GU_GCGAACUGC___GU__AGUGG\n3'-UUU...UUAUA______________________A_________AAC__A______ACG-5'\n_____________|____________________________________________|\n_____________40___________________________________________3\n |
96 -- 102 |
15 -- 21 |
-43.7402 kcal/mol |
14.1704 kcal/mol |
15.29 kcal/mol |
71 115@LB@ | |@LB@5'-UUG...UCCCA UUUGAC G GAA GA ACUUC...UGA-3'@LB@ GGGGCGU GAUGCC CA CGCUUGAUG CA UCACC@LB@ ||:|||: :|:||| || |||||||:| || |||||@LB@ CCUCGCG UUGCGG GU GCGAACUGC GU AGUGG@LB@3'-UUU...UUAUA A AAC A ACG-5'@LB@ | |@LB@ 40 3@LB@@LB@@LB@Energy -14.28 kcal/mol@LB@Hybridization Energy -43.7402 kcal/mol@LB@Unfolding Energy - mRNA 14.1704 kcal/mol@LB@Unfolding Energy - sRNA 15.29 kcal/mol@LB@@LB@Position - mRNA 72 -- 114@LB@Position - sRNA 4 -- 39@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 100 |
0.003303 |
0.1114 |
b1126 |
potA |
-10.42 |
0.087379 |
73 -- 89 |
61 -- 76 |
spermidine/putrescine ABC transporter ATPase |
|
_____________72________________90\n_____________|_________________|\n5'-CAA...AUAAA____A_C__________CAACA...UUC-3'\n______________GCUA_G_CAGUAAUUCA\n______________||||_|_||||||||||\n______________CGAU_C_GUCAUUAAGU\n3'-UUU...UAACA____A____________UUUUU...ACG-5'\n_____________|_________________|\n_____________77________________60\n |
83 -- 89 |
61 -- 67 |
-17.6149 kcal/mol |
3.71554 kcal/mol |
3.47887 kcal/mol |
72 90@LB@ | |@LB@5'-CAA...AUAAA A C CAACA...UUC-3'@LB@ GCUA G CAGUAAUUCA@LB@ |||| | ||||||||||@LB@ CGAU C GUCAUUAAGU@LB@3'-UUU...UAACA A UUUUU...ACG-5'@LB@ | |@LB@ 77 60@LB@@LB@@LB@Energy -10.42 kcal/mol@LB@Hybridization Energy -17.6149 kcal/mol@LB@Unfolding Energy - mRNA 3.71554 kcal/mol@LB@Unfolding Energy - sRNA 3.47887 kcal/mol@LB@@LB@Position - mRNA 73 -- 89@LB@Position - sRNA 61 -- 76@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 61 -- 67@LB@ |
