| 125 |
0.004538 |
0.1258 |
b0951 |
pqiB |
-12.90 |
0.019327 |
185 -- 205 |
37 -- 57 |
paraquat-inducible SoxRS-regulated MCE domain protein |
|
_____________184___________________206\n_____________|_____________________|\n5'-CUG...AGCAU______UCCU___________AUCUA...UUC-3'\n______________GAGGAG____GACAGUAUGGA\n______________:||||:____||||:||||||\n______________UUCCUU____CUGUUAUACCU\n3'-UUU...GUUUU______CAUU___________CGCGU...ACG-5'\n_____________|_____________________|\n_____________58____________________36\n |
199 -- 205 |
37 -- 43 |
-21.8788 kcal/mol |
5.24969 kcal/mol |
3.68958 kcal/mol |
184 206@LB@ | |@LB@5'-CUG...AGCAU UCCU AUCUA...UUC-3'@LB@ GAGGAG GACAGUAUGGA@LB@ :||||: ||||:||||||@LB@ UUCCUU CUGUUAUACCU@LB@3'-UUU...GUUUU CAUU CGCGU...ACG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -21.8788 kcal/mol@LB@Unfolding Energy - mRNA 5.24969 kcal/mol@LB@Unfolding Energy - sRNA 3.68958 kcal/mol@LB@@LB@Position - mRNA 185 -- 205@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 29 |
0.0001601 |
0.01945 |
b3472 |
dcrB |
-12.60 |
0.023536 |
186 -- 203 |
41 -- 59 |
putative lipoprotein |
|
_____________185_________________204\n_____________|___________________|\n5'-UGG...UUAUC_____________U_____CGCAA...UCG-3'\n______________GAAAGGAAG_AAG_CAAUG\n______________:||||||||_|||_||||:\n______________UUUUCCUUC_UUC_GUUAU\n3'-UUU...AAGUU_________A___U_____ACCUC...ACG-5'\n_____________|___________________|\n_____________60__________________40\n |
188 -- 194 |
51 -- 57 |
-16.362 kcal/mol |
1.80431 kcal/mol |
1.95655 kcal/mol |
185 204@LB@ | |@LB@5'-UGG...UUAUC U CGCAA...UCG-3'@LB@ GAAAGGAAG AAG CAAUG@LB@ :|||||||| ||| ||||:@LB@ UUUUCCUUC UUC GUUAU@LB@3'-UUU...AAGUU A U ACCUC...ACG-5'@LB@ | |@LB@ 60 40@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -16.362 kcal/mol@LB@Unfolding Energy - mRNA 1.80431 kcal/mol@LB@Unfolding Energy - sRNA 1.95655 kcal/mol@LB@@LB@Position - mRNA 186 -- 203@LB@Position - sRNA 41 -- 59@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 68 |
0.001184 |
0.06134 |
b3188 |
sfsB |
-9.82 |
0.121108 |
186 -- 205 |
37 -- 57 |
malPQ operon transcriptional activator |
|
_____________185___________________206\n_____________|_____________________|\n5'-CGG...AACUU____________AAAA_____AAGUA...UGA-3'\n______________AAGG_AGUGAGG____AUGGA\n______________||||_|||:||:____|||||\n______________UUCC_UCAUUCU____UACCU\n3'-UUU...GUUUU____U_______GUUA_____CGCGU...ACG-5'\n_____________|_____________________|\n_____________58____________________36\n |
190 -- 196 |
46 -- 52 |
-17.294 kcal/mol |
3.7439 kcal/mol |
3.68958 kcal/mol |
185 206@LB@ | |@LB@5'-CGG...AACUU AAAA AAGUA...UGA-3'@LB@ AAGG AGUGAGG AUGGA@LB@ |||| |||:||: |||||@LB@ UUCC UCAUUCU UACCU@LB@3'-UUU...GUUUU U GUUA CGCGU...ACG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -9.82 kcal/mol@LB@Hybridization Energy -17.294 kcal/mol@LB@Unfolding Energy - mRNA 3.7439 kcal/mol@LB@Unfolding Energy - sRNA 3.68958 kcal/mol@LB@@LB@Position - mRNA 186 -- 205@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 110 |
0.003505 |
0.1114 |
b4111 |
proP |
-11.30 |
0.052648 |
186 -- 222 |
48 -- 93 |
proline/glycine betaine transporter |
|
_____________185________________________________________________223\n_____________|__________________________________________________|\n5'-CAC...CCAAC_________GA_____________U________________AAAA_____AACCG...GUA-3'\n______________UC_UGCGAG__AA____GCUAUGC_________GAAAAGGA____AGUAA\n______________||_|:|||:__||____|||||||_________:|||||||____|||||\n______________AG_AUGCUU__UU____CGAUACG_________UUUUUCCU____UCAUU\n3'-UUU...GCCGC__C______AG__AACA_______UCAUUAAGU_________________CUGUU...ACG-5'\n_____________|__________________________________________________|\n_____________94_________________________________________________47\n |
198 -- 204 |
70 -- 76 |
-22.6159 kcal/mol |
6.45165 kcal/mol |
4.87071 kcal/mol |
185 223@LB@ | |@LB@5'-CAC...CCAAC GA U AAAA AACCG...GUA-3'@LB@ UC UGCGAG AA GCUAUGC GAAAAGGA AGUAA@LB@ || |:|||: || ||||||| :||||||| |||||@LB@ AG AUGCUU UU CGAUACG UUUUUCCU UCAUU@LB@3'-UUU...GCCGC C AG AACA UCAUUAAGU CUGUU...ACG-5'@LB@ | |@LB@ 94 47@LB@@LB@@LB@Energy -11.30 kcal/mol@LB@Hybridization Energy -22.6159 kcal/mol@LB@Unfolding Energy - mRNA 6.45165 kcal/mol@LB@Unfolding Energy - sRNA 4.87071 kcal/mol@LB@@LB@Position - mRNA 186 -- 222@LB@Position - sRNA 48 -- 93@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 8 |
8.903e-06 |
0.003921 |
b1654 |
grxD |
-12.06 |
0.033180 |
187 -- 203 |
41 -- 57 |
glutaredoxin-4 |
|
_____________186_____________________204\n_____________|_______________________|\n5'-AAA...AGUUU_______C_______________ACCAC...CUG-3'\n______________GAGGAAG_AAGACAAU___GAGC\n______________:||||||_||||||||___||||\n______________UUCCUUC_UUCUGUUA___CUCG\n3'-UUU...GUUUU_______A________UAC____CGUUG...ACG-5'\n_____________|_______________________|\n_____________58______________________40\n |
196 -- 202 |
42 -- 48 |
-22.6133 kcal/mol |
5.89741 kcal/mol |
4.1846 kcal/mol |
186 204@LB@ | |@LB@5'-AAA...AGUUU C ACCAC...CUG-3'@LB@ GAGGAAG AAGACAAU GAGC@LB@ :|||||| |||||||| ||||@LB@ UUCCUUC UUCUGUUA CUCG@LB@3'-UUU...GUUUU A UAC CGUUG...ACG-5'@LB@ | |@LB@ 58 40@LB@@LB@@LB@Energy -12.06 kcal/mol@LB@Hybridization Energy -22.6133 kcal/mol@LB@Unfolding Energy - mRNA 5.89741 kcal/mol@LB@Unfolding Energy - sRNA 4.1846 kcal/mol@LB@@LB@Position - mRNA 187 -- 203@LB@Position - sRNA 41 -- 57@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 14 |
2.236e-05 |
0.005627 |
b3306 |
rpsH |
-12.22 |
0.029933 |
187 -- 206 |
35 -- 55 |
30S ribosomal subunit protein S8 |
|
_____________186____________________207\n_____________|______________________|\n5'-AGC...AUCAC______A_______________AUGCA...AAG-3'\n______________GGGAGU_AAGACAG_AU_GAGC\n______________||:|||_||||||:_||_||||\n______________CCUUCA_UUCUGUU_UA_CUCG\n3'-UUU...UUUUU______________A__C____CGUUG...ACG-5'\n_____________|______________________|\n_____________56_____________________34\n |
194 -- 200 |
43 -- 49 |
-20.142 kcal/mol |
3.78995 kcal/mol |
4.0932 kcal/mol |
186 207@LB@ | |@LB@5'-AGC...AUCAC A AUGCA...AAG-3'@LB@ GGGAGU AAGACAG AU GAGC@LB@ ||:||| ||||||: || ||||@LB@ CCUUCA UUCUGUU UA CUCG@LB@3'-UUU...UUUUU A C CGUUG...ACG-5'@LB@ | |@LB@ 56 34@LB@@LB@@LB@Energy -12.22 kcal/mol@LB@Hybridization Energy -20.142 kcal/mol@LB@Unfolding Energy - mRNA 3.78995 kcal/mol@LB@Unfolding Energy - sRNA 4.0932 kcal/mol@LB@@LB@Position - mRNA 187 -- 206@LB@Position - sRNA 35 -- 55@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 19 |
4.82e-05 |
0.008725 |
b2452 |
eutH |
-15.86 |
0.002353 |
187 -- 206 |
37 -- 56 |
ethanolamine transporter |
|
_____________186___________________207\n_____________|_____________________|\n5'-UUG...CUAAC_______A_____________AUUAA...UCC-3'\n______________AGGGAGU_AAGGCGAUG_GGA\n______________|||:|||_|||:|:||:_|||\n______________UCCUUCA_UUCUGUUAU_CCU\n3'-UUU...UUUUU_________________A___CGCGU...ACG-5'\n_____________|_____________________|\n_____________57____________________36\n |
197 -- 203 |
41 -- 47 |
-22.1606 kcal/mol |
2.59538 kcal/mol |
3.6645 kcal/mol |
186 207@LB@ | |@LB@5'-UUG...CUAAC A AUUAA...UCC-3'@LB@ AGGGAGU AAGGCGAUG GGA@LB@ |||:||| |||:|:||: |||@LB@ UCCUUCA UUCUGUUAU CCU@LB@3'-UUU...UUUUU A CGCGU...ACG-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -15.86 kcal/mol@LB@Hybridization Energy -22.1606 kcal/mol@LB@Unfolding Energy - mRNA 2.59538 kcal/mol@LB@Unfolding Energy - sRNA 3.6645 kcal/mol@LB@@LB@Position - mRNA 187 -- 206@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 21 |
6.29e-05 |
0.01049 |
b4040 |
ubiA |
-12.44 |
0.026053 |
187 -- 207 |
35 -- 59 |
p-hydroxybenzoate octaprenyltransferase |
|
_____________186_______________________208\n_____________|_________________________|\n5'-AGC...GUACU________AAA______________GGAGU...UAU-3'\n______________AAGAGGAA_______AAUAUGGAGU\n______________||:|||||_______|||||||||:\n______________UUUUCCUU_______UUAUACCUCG\n3'-UUU...AAGUU________CAUUCUG__________CGUUG...ACG-5'\n_____________|_________________________|\n_____________60________________________34\n |
201 -- 207 |
35 -- 41 |
-18.3412 kcal/mol |
1.63668 kcal/mol |
4.22714 kcal/mol |
186 208@LB@ | |@LB@5'-AGC...GUACU AAA GGAGU...UAU-3'@LB@ AAGAGGAA AAUAUGGAGU@LB@ ||:||||| |||||||||:@LB@ UUUUCCUU UUAUACCUCG@LB@3'-UUU...AAGUU CAUUCUG CGUUG...ACG-5'@LB@ | |@LB@ 60 34@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -18.3412 kcal/mol@LB@Unfolding Energy - mRNA 1.63668 kcal/mol@LB@Unfolding Energy - sRNA 4.22714 kcal/mol@LB@@LB@Position - mRNA 187 -- 207@LB@Position - sRNA 35 -- 59@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 35 |
0.0002679 |
0.02697 |
b2152 |
yeiB |
-13.89 |
0.009991 |
187 -- 220 |
20 -- 59 |
DUF418 family putative inner membrane protein |
|
_____________186______________________________________221\n_____________|________________________________________|\n5'-GCU...UGAUU______C_______ACC________________A______CGAUU...AUC-3'\n______________AAAAGG____AGGA____AUGGAGCGCAACGUC___CGCU\n______________||||||____|:||____|||||||||||||:|___||||\n______________UUUUCC____UUCU____UACCUCGCGUUGCGG___GCGA\n3'-UUU...AAGUU______UUCA____GUUA_______________GUA____ACUGC...ACG-5'\n_____________|________________________________________|\n_____________60_______________________________________19\n |
209 -- 215 |
27 -- 33 |
-38.6917 kcal/mol |
10.9969 kcal/mol |
13.8113 kcal/mol |
186 221@LB@ | |@LB@5'-GCU...UGAUU C ACC A CGAUU...AUC-3'@LB@ AAAAGG AGGA AUGGAGCGCAACGUC CGCU@LB@ |||||| |:|| |||||||||||||:| ||||@LB@ UUUUCC UUCU UACCUCGCGUUGCGG GCGA@LB@3'-UUU...AAGUU UUCA GUUA GUA ACUGC...ACG-5'@LB@ | |@LB@ 60 19@LB@@LB@@LB@Energy -13.89 kcal/mol@LB@Hybridization Energy -38.6917 kcal/mol@LB@Unfolding Energy - mRNA 10.9969 kcal/mol@LB@Unfolding Energy - sRNA 13.8113 kcal/mol@LB@@LB@Position - mRNA 187 -- 220@LB@Position - sRNA 20 -- 59@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 2 |
4.208e-07 |
0.0007412 |
b2531 |
iscR |
-21.46 |
0.000012 |
188 -- 264 |
2 -- 56 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________187___________________________________________________________________________265\n_____________|_____________________________________________________________________________|\n5'-AUG...UUUGA__U___________UG_GACUGACAUCUAAA______U_____GUGACCG__A______________C__A__U___AAGCG...AAC-3'\n______________GG_GAAGUAAGACA__A______________GGGCGC_AUGCC_______CA_UGCUUGACGUUGCG_UC_AC_CUG\n______________:|_|||||||||||__|______________|:||||_|:|||_______||_:||||||||||||:_||_||_|||\n______________UC_CUUCAUUCUGU__U______________CUCGCG_UGCGG_______GU_GCGAACUGCAACGU_AG_UG_GAC\n3'-UUU...UUUUU______________UA_AC__________________U______________A______________A_________G-5'\n_____________|_____________________________________________________________________________|\n_____________57____________________________________________________________________________1\n |
244 -- 250 |
14 -- 20 |
-58.8762 kcal/mol |
20.5805 kcal/mol |
16.8438 kcal/mol |
187 265@LB@ | |@LB@5'-AUG...UUUGA U UG GACUGACAUCUAAA U GUGACCG A C A U AAGCG...AAC-3'@LB@ GG GAAGUAAGACA A GGGCGC AUGCC CA UGCUUGACGUUGCG UC AC CUG@LB@ :| ||||||||||| | |:|||| |:||| || :||||||||||||: || || |||@LB@ UC CUUCAUUCUGU U CUCGCG UGCGG GU GCGAACUGCAACGU AG UG GAC@LB@3'-UUU...UUUUU UA AC U A A G-5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -21.46 kcal/mol@LB@Hybridization Energy -58.8762 kcal/mol@LB@Unfolding Energy - mRNA 20.5805 kcal/mol@LB@Unfolding Energy - sRNA 16.8438 kcal/mol@LB@@LB@Position - mRNA 188 -- 264@LB@Position - sRNA 2 -- 56@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 14 -- 20@LB@ |
