| 21 |
0.000535 |
0.08206 |
b1639 |
mliC |
-10.27 |
0.013452 |
27 -- 40 |
8 -- 21 |
inhibitor of c-type lysozyme membrane-bound; putative lipoprotein |
|
_____________26_____________41\n_____________|______________|\n5'-GCU...GGGAU______________CCUUC...UGG-3'\n______________UACCAGGAAAUCUG\n______________:|||||||||||||\n______________GUGGUCCUUUAGAC\n3'-UUU...GCAAU______________UACACAA-5'\n_____________|______________|\n_____________22_____________7\n |
32 -- 38 |
10 -- 16 |
-22.0821 kcal/mol |
4.25106 kcal/mol |
7.55865 kcal/mol |
26 41@LB@ | |@LB@5'-GCU...GGGAU CCUUC...UGG-3'@LB@ UACCAGGAAAUCUG@LB@ :|||||||||||||@LB@ GUGGUCCUUUAGAC@LB@3'-UUU...GCAAU UACACAA-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -22.0821 kcal/mol@LB@Unfolding Energy - mRNA 4.25106 kcal/mol@LB@Unfolding Energy - sRNA 7.55865 kcal/mol@LB@@LB@Position - mRNA 27 -- 40@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 10 |
0.0001005 |
0.03239 |
b1260 |
trpA |
-10.26 |
0.013526 |
184 -- 203 |
5 -- 22 |
tryptophan synthase alpha subunit |
|
_____________183__________________204\n_____________|____________________|\n5'-GCC...UGAAA____GAG_____________GAACG...CAU-3'\n______________GCAC___GGGAAAUCUGAUG\n______________:|||___:||||||||||||\n______________UGUG___UCCUUUAGACUAC\n3'-UUU...AGCAA____G_______________ACAA-5'\n_____________|____________________|\n_____________23___________________4\n |
192 -- 198 |
10 -- 16 |
-23.1901 kcal/mol |
5.35202 kcal/mol |
7.57357 kcal/mol |
183 204@LB@ | |@LB@5'-GCC...UGAAA GAG GAACG...CAU-3'@LB@ GCAC GGGAAAUCUGAUG@LB@ :||| :||||||||||||@LB@ UGUG UCCUUUAGACUAC@LB@3'-UUU...AGCAA G ACAA-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -10.26 kcal/mol@LB@Hybridization Energy -23.1901 kcal/mol@LB@Unfolding Energy - mRNA 5.35202 kcal/mol@LB@Unfolding Energy - sRNA 7.57357 kcal/mol@LB@@LB@Position - mRNA 184 -- 203@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 109 |
0.009396 |
0.2693 |
b1958 |
yedI |
-10.22 |
0.013950 |
83 -- 110 |
33 -- 54 |
DUF808 family inner membrane protein |
|
_____________82_____________________________111\n_____________|______________________________|\n5'-AAA...CAUUC______________AUAUAAUU________UUGUU...CCG-3'\n______________UGCU__GGCGAGAG________GCACUUGA\n______________||||__:||:|||:________||||||:|\n______________ACGA__UCGUUCUU________CGUGAAUU\n3'-UUU...UUUGA____AU________________________UUUUA...CAA-5'\n_____________|______________________________|\n_____________55_____________________________32\n |
104 -- 110 |
33 -- 39 |
-21.3805 kcal/mol |
4.98239 kcal/mol |
6.17798 kcal/mol |
82 111@LB@ | |@LB@5'-AAA...CAUUC AUAUAAUU UUGUU...CCG-3'@LB@ UGCU GGCGAGAG GCACUUGA@LB@ |||| :||:|||: ||||||:|@LB@ ACGA UCGUUCUU CGUGAAUU@LB@3'-UUU...UUUGA AU UUUUA...CAA-5'@LB@ | |@LB@ 55 32@LB@@LB@@LB@Energy -10.22 kcal/mol@LB@Hybridization Energy -21.3805 kcal/mol@LB@Unfolding Energy - mRNA 4.98239 kcal/mol@LB@Unfolding Energy - sRNA 6.17798 kcal/mol@LB@@LB@Position - mRNA 83 -- 110@LB@Position - sRNA 33 -- 54@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 27 |
0.0008083 |
0.09021 |
b2711 |
norW |
-10.17 |
0.014477 |
99 -- 112 |
13 -- 26 |
NADH:flavorubredoxin oxidoreductase |
|
_____________98_____________113\n_____________|______________|\n5'-GAA...CAGGA______________CGCCG...UUG-3'\n______________CGUUGCGCCAGGAA\n______________||||:|:|||||||\n______________GCAAUGUGGUCCUU\n3'-UUU...UUUAA______________UAGAC...CAA-5'\n_____________|______________|\n_____________27_____________12\n |
106 -- 112 |
13 -- 19 |
-23.5838 kcal/mol |
5.14562 kcal/mol |
8.27144 kcal/mol |
98 113@LB@ | |@LB@5'-GAA...CAGGA CGCCG...UUG-3'@LB@ CGUUGCGCCAGGAA@LB@ ||||:|:|||||||@LB@ GCAAUGUGGUCCUU@LB@3'-UUU...UUUAA UAGAC...CAA-5'@LB@ | |@LB@ 27 12@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -23.5838 kcal/mol@LB@Unfolding Energy - mRNA 5.14562 kcal/mol@LB@Unfolding Energy - sRNA 8.27144 kcal/mol@LB@@LB@Position - mRNA 99 -- 112@LB@Position - sRNA 13 -- 26@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 46 |
0.002046 |
0.1433 |
b3106 |
yhaK |
-10.10 |
0.015122 |
97 -- 120 |
7 -- 28 |
redox-sensitive bicupin |
|
_____________96_______________________121\n_____________|________________________|\n5'-UCC...GCCAU______CU__U_____________ACAUA...AAU-3'\n______________UUCGUU__CA_UCAGGAAAUUUGA\n______________||||||__||_:||||||||:|||\n______________AAGCAA__GU_GGUCCUUUAGACU\n3'-UUU...UUUUU______U_________________ACACAA-5'\n_____________|________________________|\n_____________29_______________________6\n |
111 -- 117 |
10 -- 16 |
-23.1033 kcal/mol |
4.40095 kcal/mol |
8.59864 kcal/mol |
96 121@LB@ | |@LB@5'-UCC...GCCAU CU U ACAUA...AAU-3'@LB@ UUCGUU CA UCAGGAAAUUUGA@LB@ |||||| || :||||||||:|||@LB@ AAGCAA GU GGUCCUUUAGACU@LB@3'-UUU...UUUUU U ACACAA-5'@LB@ | |@LB@ 29 6@LB@@LB@@LB@Energy -10.10 kcal/mol@LB@Hybridization Energy -23.1033 kcal/mol@LB@Unfolding Energy - mRNA 4.40095 kcal/mol@LB@Unfolding Energy - sRNA 8.59864 kcal/mol@LB@@LB@Position - mRNA 97 -- 120@LB@Position - sRNA 7 -- 28@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 35 |
0.001338 |
0.121 |
b0405 |
queA |
-9.92 |
0.017135 |
73 -- 106 |
26 -- 60 |
S-adenosylmethionine:tRNA ribosyltransferase-isomerase |
|
_____________72____________________________________107\n_____________|_____________________________________|\n5'-GGG...UCCGC_____GG___A__U_____U_________________AUCGA...GGC-3'\n______________GAGAU__GCU_AA_GCAGG_GAGC___UAAAAAAUUC\n______________||:|:__|||_||_|||:|_:|||___||||||||||\n______________CUUUG__CGA_UU_CGUUC_UUCG___AUUUUUUAAG\n3'-UUU...CCCUA_____AA___A_____________UGA__________CAAUG...CAA-5'\n_____________|_____________________________________|\n_____________61____________________________________25\n |
100 -- 106 |
26 -- 32 |
-25.4572 kcal/mol |
9.25896 kcal/mol |
6.27609 kcal/mol |
72 107@LB@ | |@LB@5'-GGG...UCCGC GG A U U AUCGA...GGC-3'@LB@ GAGAU GCU AA GCAGG GAGC UAAAAAAUUC@LB@ ||:|: ||| || |||:| :||| ||||||||||@LB@ CUUUG CGA UU CGUUC UUCG AUUUUUUAAG@LB@3'-UUU...CCCUA AA A UGA CAAUG...CAA-5'@LB@ | |@LB@ 61 25@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -25.4572 kcal/mol@LB@Unfolding Energy - mRNA 9.25896 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 73 -- 106@LB@Position - sRNA 26 -- 60@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 178 |
0.02074 |
0.3753 |
b4324 |
uxuR |
-9.92 |
0.017203 |
196 -- 210 |
8 -- 22 |
fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor |
|
_____________195_____________211\n_____________|_______________|\n5'-UAC...ACACA______U________CCACC...UGC-3'\n______________ACACCA_GAAAUCUG\n______________||||||_||||||||\n______________UGUGGU_CUUUAGAC\n3'-UUU...AGCAA______C________UACACAA-5'\n_____________|_______________|\n_____________23______________7\n |
203 -- 209 |
9 -- 15 |
-19.4171 kcal/mol |
1.94047 kcal/mol |
7.56026 kcal/mol |
195 211@LB@ | |@LB@5'-UAC...ACACA U CCACC...UGC-3'@LB@ ACACCA GAAAUCUG@LB@ |||||| ||||||||@LB@ UGUGGU CUUUAGAC@LB@3'-UUU...AGCAA C UACACAA-5'@LB@ | |@LB@ 23 7@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -19.4171 kcal/mol@LB@Unfolding Energy - mRNA 1.94047 kcal/mol@LB@Unfolding Energy - sRNA 7.56026 kcal/mol@LB@@LB@Position - mRNA 196 -- 210@LB@Position - sRNA 8 -- 22@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 40 |
0.001639 |
0.1292 |
b0156 |
erpA |
-9.82 |
0.018424 |
105 -- 133 |
14 -- 48 |
iron-sulfur cluster insertion protein |
|
_____________104_________________________________134\n_____________|___________________________________|\n5'-UAG...CAGCC________________________AA_________UAUUA...UAC-3'\n______________AGCGAGAA_UACUUGAA_____CG__AUACCAGGG\n______________|||:||||_:||||:||_____||__|:||||||:\n______________UCGUUCUU_GUGAAUUU_____GC__UGUGGUCCU\n3'-UUU...CGAAU________C________UUUAA__AA_________UUAGA...CAA-5'\n_____________|___________________________________|\n_____________49__________________________________13\n |
127 -- 133 |
14 -- 20 |
-29.1703 kcal/mol |
5.55319 kcal/mol |
13.801 kcal/mol |
104 134@LB@ | |@LB@5'-UAG...CAGCC AA UAUUA...UAC-3'@LB@ AGCGAGAA UACUUGAA CG AUACCAGGG@LB@ |||:|||| :||||:|| || |:||||||:@LB@ UCGUUCUU GUGAAUUU GC UGUGGUCCU@LB@3'-UUU...CGAAU C UUUAA AA UUAGA...CAA-5'@LB@ | |@LB@ 49 13@LB@@LB@@LB@Energy -9.82 kcal/mol@LB@Hybridization Energy -29.1703 kcal/mol@LB@Unfolding Energy - mRNA 5.55319 kcal/mol@LB@Unfolding Energy - sRNA 13.801 kcal/mol@LB@@LB@Position - mRNA 105 -- 133@LB@Position - sRNA 14 -- 48@LB@Position Seed - mRNA 127 -- 133@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 100 |
0.007523 |
0.2423 |
b1744 |
astE |
-9.81 |
0.018546 |
117 -- 135 |
36 -- 53 |
succinylglutamate desuccinylase |
|
_____________116_________________136\n_____________|___________________|\n5'-GGU...GCUGC__GAA______________GGAUG...UGC-3'\n______________GC___GGGCGGGAAGCACU\n______________||___::||::||||||||\n______________CG___UUCGUUCUUCGUGA\n3'-UUU...UUGAA__AA_______________AUUUU...CAA-5'\n_____________|___________________|\n_____________54__________________35\n |
129 -- 135 |
36 -- 42 |
-22.0517 kcal/mol |
6.14291 kcal/mol |
6.10238 kcal/mol |
116 136@LB@ | |@LB@5'-GGU...GCUGC GAA GGAUG...UGC-3'@LB@ GC GGGCGGGAAGCACU@LB@ || ::||::||||||||@LB@ CG UUCGUUCUUCGUGA@LB@3'-UUU...UUGAA AA AUUUU...CAA-5'@LB@ | |@LB@ 54 35@LB@@LB@@LB@Energy -9.81 kcal/mol@LB@Hybridization Energy -22.0517 kcal/mol@LB@Unfolding Energy - mRNA 6.14291 kcal/mol@LB@Unfolding Energy - sRNA 6.10238 kcal/mol@LB@@LB@Position - mRNA 117 -- 135@LB@Position - sRNA 36 -- 53@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 142 |
0.01375 |
0.3119 |
b4166 |
queG |
-9.76 |
0.019130 |
257 -- 284 |
36 -- 60 |
epoxyqueuosine reductase cobalamine-stimulated; queosine biosynthesis |
|
_____________256__________________________285\n_____________|____________________________|\n5'-CGC...GGGCU______GG____UC______U_______ACCGA...UCA-3'\n______________GGAACU__GCUU__AGCAGG_AGGUAUU\n______________|:||||__||||__||||:|_|:|:|:|\n______________CUUUGA__CGAA__UCGUUC_UUCGUGA\n3'-UUU...CCCUA______A_____U_______________AUUUU...CAA-5'\n_____________|____________________________|\n_____________61___________________________35\n |
278 -- 284 |
36 -- 42 |
-22.8123 kcal/mol |
6.80174 kcal/mol |
6.24973 kcal/mol |
256 285@LB@ | |@LB@5'-CGC...GGGCU GG UC U ACCGA...UCA-3'@LB@ GGAACU GCUU AGCAGG AGGUAUU@LB@ |:|||| |||| ||||:| |:|:|:|@LB@ CUUUGA CGAA UCGUUC UUCGUGA@LB@3'-UUU...CCCUA A U AUUUU...CAA-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -9.76 kcal/mol@LB@Hybridization Energy -22.8123 kcal/mol@LB@Unfolding Energy - mRNA 6.80174 kcal/mol@LB@Unfolding Energy - sRNA 6.24973 kcal/mol@LB@@LB@Position - mRNA 257 -- 284@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 36 -- 42@LB@ |
