| 160 |
0.01746 |
0.3504 |
b4542 |
yohO |
-11.65 |
0.004993 |
133 -- 150 |
23 -- 41 |
putative membrane protein |
|
_____________132_________________151\n_____________|___________________|\n5'-UCG...CACUC_________U_________AACAA...GUG-3'\n______________GGCAUUUAA__GAUUCGUU\n______________:|||:||||__:|||||||\n______________UCGUGAAUU__UUAAGCAA\n3'-UUU...GUUCU_________UU________UGUGG...CAA-5'\n_____________|___________________|\n_____________42__________________22\n |
144 -- 150 |
23 -- 29 |
-16.4387 kcal/mol |
3.13759 kcal/mol |
1.64896 kcal/mol |
132 151@LB@ | |@LB@5'-UCG...CACUC U AACAA...GUG-3'@LB@ GGCAUUUAA GAUUCGUU@LB@ :|||:|||| :|||||||@LB@ UCGUGAAUU UUAAGCAA@LB@3'-UUU...GUUCU UU UGUGG...CAA-5'@LB@ | |@LB@ 42 22@LB@@LB@@LB@Energy -11.65 kcal/mol@LB@Hybridization Energy -16.4387 kcal/mol@LB@Unfolding Energy - mRNA 3.13759 kcal/mol@LB@Unfolding Energy - sRNA 1.64896 kcal/mol@LB@@LB@Position - mRNA 133 -- 150@LB@Position - sRNA 23 -- 41@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 48 |
0.002202 |
0.1465 |
b3209 |
elbB |
-11.61 |
0.005163 |
95 -- 137 |
2 -- 41 |
isoprenoid biosynthesis protein with amidotransferase-like domain |
|
_____________94__________________________________________138\n_____________|___________________________________________|\n5'-GCG...AAGAU___AAA_______U____________G_AUC____AA______GAUGC...GUG-3'\n______________AGC___ACUUAAA_GAUUUGUUACAU_A___AGUU__AUGUGU\n______________|||___|||||||_:|||:||||||:_|___|:|:__||||||\n______________UCG___UGAAUUU_UUAAGCAAUGUG_U___UUAG__UACACA\n3'-UUU...GUUCU_____________U____________G_CCU____AC______A-5'\n_____________|___________________________________________|\n_____________42__________________________________________1\n |
101 -- 107 |
32 -- 38 |
-29.0989 kcal/mol |
8.27062 kcal/mol |
9.22136 kcal/mol |
94 138@LB@ | |@LB@5'-GCG...AAGAU AAA U G AUC AA GAUGC...GUG-3'@LB@ AGC ACUUAAA GAUUUGUUACAU A AGUU AUGUGU@LB@ ||| ||||||| :|||:||||||: | |:|: ||||||@LB@ UCG UGAAUUU UUAAGCAAUGUG U UUAG UACACA@LB@3'-UUU...GUUCU U G CCU AC A-5'@LB@ | |@LB@ 42 1@LB@@LB@@LB@Energy -11.61 kcal/mol@LB@Hybridization Energy -29.0989 kcal/mol@LB@Unfolding Energy - mRNA 8.27062 kcal/mol@LB@Unfolding Energy - sRNA 9.22136 kcal/mol@LB@@LB@Position - mRNA 95 -- 137@LB@Position - sRNA 2 -- 41@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 31 |
0.0009469 |
0.09599 |
b0166 |
dapD |
-11.60 |
0.005180 |
96 -- 124 |
11 -- 40 |
2 3 4 5-tetrahydropyridine-2-carboxylate N-succinyltransferase |
|
_____________95_____________________________125\n_____________|______________________________|\n5'-UUG...GGCGU________UAACGA_______G________GCAUC...AGG-3'\n______________GCGCUUAA_______GUUGCA_CAGGAAGU\n______________||:|||||_______|||:||_||||||:|\n______________CGUGAAUU_______CAAUGU_GUCCUUUA\n3'-UUU...UUCUU________UUUUAAG______G________GACUA...CAA-5'\n_____________|______________________________|\n_____________41_____________________________10\n |
97 -- 103 |
33 -- 39 |
-29.7713 kcal/mol |
8.96001 kcal/mol |
9.20882 kcal/mol |
95 125@LB@ | |@LB@5'-UUG...GGCGU UAACGA G GCAUC...AGG-3'@LB@ GCGCUUAA GUUGCA CAGGAAGU@LB@ ||:||||| |||:|| ||||||:|@LB@ CGUGAAUU CAAUGU GUCCUUUA@LB@3'-UUU...UUCUU UUUUAAG G GACUA...CAA-5'@LB@ | |@LB@ 41 10@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -29.7713 kcal/mol@LB@Unfolding Energy - mRNA 8.96001 kcal/mol@LB@Unfolding Energy - sRNA 9.20882 kcal/mol@LB@@LB@Position - mRNA 96 -- 124@LB@Position - sRNA 11 -- 40@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 88 |
0.006209 |
0.2266 |
b1643 |
ydhI |
-11.55 |
0.005389 |
141 -- 153 |
28 -- 40 |
DUF1656 family putative inner membrane efflux pump associated protein |
|
_____________140___________154\n_____________|_____________|\n5'-UUU...UUUUC_____________AUUUA...GAU-3'\n______________GCACUUAAAGAAU\n______________|||||||||:|||\n______________CGUGAAUUUUUUA\n3'-UUU...UUCUU_____________AGCAA...CAA-5'\n_____________|_____________|\n_____________41____________27\n |
144 -- 150 |
31 -- 37 |
-15.2864 kcal/mol |
2.10141 kcal/mol |
1.63611 kcal/mol |
140 154@LB@ | |@LB@5'-UUU...UUUUC AUUUA...GAU-3'@LB@ GCACUUAAAGAAU@LB@ |||||||||:|||@LB@ CGUGAAUUUUUUA@LB@3'-UUU...UUCUU AGCAA...CAA-5'@LB@ | |@LB@ 41 27@LB@@LB@@LB@Energy -11.55 kcal/mol@LB@Hybridization Energy -15.2864 kcal/mol@LB@Unfolding Energy - mRNA 2.10141 kcal/mol@LB@Unfolding Energy - sRNA 1.63611 kcal/mol@LB@@LB@Position - mRNA 141 -- 153@LB@Position - sRNA 28 -- 40@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 29 |
0.000834 |
0.09021 |
b2798 |
ygdG |
-11.41 |
0.005967 |
211 -- 245 |
24 -- 57 |
Ssb-binding protein misidentified as ExoIX |
|
_____________210_________________________________246\n_____________|___________________________________|\n5'-CCA...UGUUC_________UUGUC__U_____GAAUCUU______CGCAU...UCG-3'\n______________AUUUGCUUA_____GA_GCACU_______AUUCGU\n______________|:|||||||_____||_|||||_______||||||\n______________UGAACGAAU_____CU_CGUGA_______UAAGCA\n3'-UUU...UACUU_________UCGUU__U_____AUUUUU_______AUGUG...CAA-5'\n_____________|___________________________________|\n_____________58__________________________________23\n |
213 -- 219 |
49 -- 55 |
-23.2646 kcal/mol |
5.57825 kcal/mol |
6.27607 kcal/mol |
210 246@LB@ | |@LB@5'-CCA...UGUUC UUGUC U GAAUCUU CGCAU...UCG-3'@LB@ AUUUGCUUA GA GCACU AUUCGU@LB@ |:||||||| || ||||| ||||||@LB@ UGAACGAAU CU CGUGA UAAGCA@LB@3'-UUU...UACUU UCGUU U AUUUUU AUGUG...CAA-5'@LB@ | |@LB@ 58 23@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -23.2646 kcal/mol@LB@Unfolding Energy - mRNA 5.57825 kcal/mol@LB@Unfolding Energy - sRNA 6.27607 kcal/mol@LB@@LB@Position - mRNA 211 -- 245@LB@Position - sRNA 24 -- 57@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 118 |
0.009927 |
0.271 |
b1654 |
grxD |
-11.37 |
0.006167 |
180 -- 241 |
7 -- 60 |
glutaredoxin-4 |
|
_____________179_______________________________________________________________242\n_____________|_________________________________________________________________|\n5'-AAA...GUAAA________AGG________CAAUG_____CACUAUCG_______C_A_________AUUG_____AAACC...CUG-3'\n______________GAAGUUUG___AAGCAAGA_____AGCAC________AAAAAAU_C___ACGCCAG_____CUGA\n______________|||::|||___||||||||_____|||||________|||||||_|___||:||||_____||||\n______________CUUUGAAC___UUCGUUCU_____UCGUG________UUUUUUA_G___UGUGGUC_____GACU\n3'-UUU...CCCUA________GAA__________________AA_____________A_CAA_______CUUUA____ACACAA-5'\n_____________|_________________________________________________________________|\n_____________61________________________________________________________________6\n |
227 -- 233 |
16 -- 22 |
-34.247 kcal/mol |
9.03509 kcal/mol |
13.8468 kcal/mol |
179 242@LB@ | |@LB@5'-AAA...GUAAA AGG CAAUG CACUAUCG C A AUUG AAACC...CUG-3'@LB@ GAAGUUUG AAGCAAGA AGCAC AAAAAAU C ACGCCAG CUGA@LB@ |||::||| |||||||| ||||| ||||||| | ||:|||| ||||@LB@ CUUUGAAC UUCGUUCU UCGUG UUUUUUA G UGUGGUC GACU@LB@3'-UUU...CCCUA GAA AA A CAA CUUUA ACACAA-5'@LB@ | |@LB@ 61 6@LB@@LB@@LB@Energy -11.37 kcal/mol@LB@Hybridization Energy -34.247 kcal/mol@LB@Unfolding Energy - mRNA 9.03509 kcal/mol@LB@Unfolding Energy - sRNA 13.8468 kcal/mol@LB@@LB@Position - mRNA 180 -- 241@LB@Position - sRNA 7 -- 60@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 83 |
0.005546 |
0.2146 |
b0221 |
fadE |
-11.24 |
0.006780 |
20 -- 32 |
37 -- 49 |
acyl coenzyme A dehydrogenase |
|
_____________19____________33\n_____________|_____________|\n5'-GUG...GCCAA_____________GGGCA...GGA-3'\n______________AAGCGAGAAGUAC\n______________||||:|||||:||\n______________UUCGUUCUUCGUG\n3'-UUU...ACGAA_____________AAUUU...CAA-5'\n_____________|_____________|\n_____________50____________36\n |
26 -- 32 |
37 -- 43 |
-19.9972 kcal/mol |
2.7283 kcal/mol |
6.03369 kcal/mol |
19 33@LB@ | |@LB@5'-GUG...GCCAA GGGCA...GGA-3'@LB@ AAGCGAGAAGUAC@LB@ ||||:|||||:||@LB@ UUCGUUCUUCGUG@LB@3'-UUU...ACGAA AAUUU...CAA-5'@LB@ | |@LB@ 50 36@LB@@LB@@LB@Energy -11.24 kcal/mol@LB@Hybridization Energy -19.9972 kcal/mol@LB@Unfolding Energy - mRNA 2.7283 kcal/mol@LB@Unfolding Energy - sRNA 6.03369 kcal/mol@LB@@LB@Position - mRNA 20 -- 32@LB@Position - sRNA 37 -- 49@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 44 |
0.001875 |
0.1369 |
b4485 |
ytfR |
-11.10 |
0.007490 |
215 -- 227 |
10 -- 22 |
putative sugar ABC transporter ATPase |
|
_____________214___________228\n_____________|_____________|\n5'-CCU...GACCA_____________CUCCG...GCC-3'\n______________ACACCAGGAGAUC\n______________|||||||||:|||\n______________UGUGGUCCUUUAG\n3'-UUU...AGCAA_____________ACUAC...CAA-5'\n_____________|_____________|\n_____________23____________9\n |
221 -- 227 |
10 -- 16 |
-21.5971 kcal/mol |
2.94097 kcal/mol |
7.55838 kcal/mol |
214 228@LB@ | |@LB@5'-CCU...GACCA CUCCG...GCC-3'@LB@ ACACCAGGAGAUC@LB@ |||||||||:|||@LB@ UGUGGUCCUUUAG@LB@3'-UUU...AGCAA ACUAC...CAA-5'@LB@ | |@LB@ 23 9@LB@@LB@@LB@Energy -11.10 kcal/mol@LB@Hybridization Energy -21.5971 kcal/mol@LB@Unfolding Energy - mRNA 2.94097 kcal/mol@LB@Unfolding Energy - sRNA 7.55838 kcal/mol@LB@@LB@Position - mRNA 215 -- 227@LB@Position - sRNA 10 -- 22@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 158 |
0.01725 |
0.3504 |
b3857 |
mobA |
-11.09 |
0.007545 |
184 -- 212 |
5 -- 35 |
molybdopterin-guanine dinucleotide synthase |
|
_____________183_____________________________213\n_____________|_______________________________|\n5'-UCC...CACAA_______GG___________U__________ACGAC...AAC-3'\n______________UAAAAGA__CG__AUAUCGG_GAAUCUGAUG\n______________|||||:|__||__|:|:|:|_:|||||||||\n______________AUUUUUU__GC__UGUGGUC_UUUAGACUAC\n3'-UUU...CGUGA_______AA__AA_______C__________ACAA-5'\n_____________|_______________________________|\n_____________36______________________________4\n |
184 -- 190 |
29 -- 35 |
-25.0811 kcal/mol |
5.24608 kcal/mol |
8.74745 kcal/mol |
183 213@LB@ | |@LB@5'-UCC...CACAA GG U ACGAC...AAC-3'@LB@ UAAAAGA CG AUAUCGG GAAUCUGAUG@LB@ |||||:| || |:|:|:| :|||||||||@LB@ AUUUUUU GC UGUGGUC UUUAGACUAC@LB@3'-UUU...CGUGA AA AA C ACAA-5'@LB@ | |@LB@ 36 4@LB@@LB@@LB@Energy -11.09 kcal/mol@LB@Hybridization Energy -25.0811 kcal/mol@LB@Unfolding Energy - mRNA 5.24608 kcal/mol@LB@Unfolding Energy - sRNA 8.74745 kcal/mol@LB@@LB@Position - mRNA 184 -- 212@LB@Position - sRNA 5 -- 35@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 18 |
0.0004863 |
0.08107 |
b2217 |
rcsB |
-10.91 |
0.008593 |
172 -- 193 |
39 -- 59 |
response regulator in two-component regulatory system with RcsC and YojN |
|
_____________171____________________194\n_____________|______________________|\n5'-AAC...GUCAA_________GU_______U___CUAUU...GCG-3'\n______________GAGCUUGCU__AGCAAGG_AGC\n______________:|:||||||__||||||:_|||\n______________UUUGAACGA__UCGUUCU_UCG\n3'-UUU...CCUAC_________AU___________UGAAU...CAA-5'\n_____________|______________________|\n_____________60_____________________38\n |
183 -- 189 |
42 -- 48 |
-25.4912 kcal/mol |
8.43277 kcal/mol |
6.15149 kcal/mol |
171 194@LB@ | |@LB@5'-AAC...GUCAA GU U CUAUU...GCG-3'@LB@ GAGCUUGCU AGCAAGG AGC@LB@ :|:|||||| ||||||: |||@LB@ UUUGAACGA UCGUUCU UCG@LB@3'-UUU...CCUAC AU UGAAU...CAA-5'@LB@ | |@LB@ 60 38@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -25.4912 kcal/mol@LB@Unfolding Energy - mRNA 8.43277 kcal/mol@LB@Unfolding Energy - sRNA 6.15149 kcal/mol@LB@@LB@Position - mRNA 172 -- 193@LB@Position - sRNA 39 -- 59@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 42 -- 48@LB@ |
