| 120 |
0.01039 |
0.2788 |
b2314 |
dedD |
-6.27 |
0.167184 |
42 -- 54 |
45 -- 58 |
membrane-anchored periplasmic protein involved in septation |
|
_____________41_____________55\n_____________|______________|\n5'-UUG...AGAAC______________UUUGG...AUU-3'\n______________AAC_UGCUUGAGCA\n______________|||_|||||:||||\n______________UUG_ACGAAUUCGU\n3'-UUU...CUACU___A__________UCUUC...CAA-5'\n_____________|______________|\n_____________59_____________44\n |
47 -- 53 |
46 -- 52 |
-15.7533 kcal/mol |
3.46622 kcal/mol |
6.01947 kcal/mol |
41 55@LB@ | |@LB@5'-UUG...AGAAC UUUGG...AUU-3'@LB@ AAC UGCUUGAGCA@LB@ ||| |||||:||||@LB@ UUG ACGAAUUCGU@LB@3'-UUU...CUACU A UCUUC...CAA-5'@LB@ | |@LB@ 59 44@LB@@LB@@LB@Energy -6.27 kcal/mol@LB@Hybridization Energy -15.7533 kcal/mol@LB@Unfolding Energy - mRNA 3.46622 kcal/mol@LB@Unfolding Energy - sRNA 6.01947 kcal/mol@LB@@LB@Position - mRNA 42 -- 54@LB@Position - sRNA 45 -- 58@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 129 |
0.01228 |
0.3033 |
b2249 |
yfaY |
-6.27 |
0.166554 |
88 -- 102 |
6 -- 22 |
inactive PncC family protein |
|
_____________87________________103\n_____________|_________________|\n5'-UUG...GGUUA_______UU________CCCUU...AGG-3'\n______________ACGCCAG____UCUGAU\n______________||:||||____||||||\n______________UGUGGUC____AGACUA\n3'-UUU...AGCAA_______CUUU______CACAA-5'\n_____________|_________________|\n_____________23________________5\n |
88 -- 94 |
16 -- 22 |
-16.5501 kcal/mol |
2.71406 kcal/mol |
7.56159 kcal/mol |
87 103@LB@ | |@LB@5'-UUG...GGUUA UU CCCUU...AGG-3'@LB@ ACGCCAG UCUGAU@LB@ ||:|||| ||||||@LB@ UGUGGUC AGACUA@LB@3'-UUU...AGCAA CUUU CACAA-5'@LB@ | |@LB@ 23 5@LB@@LB@@LB@Energy -6.27 kcal/mol@LB@Hybridization Energy -16.5501 kcal/mol@LB@Unfolding Energy - mRNA 2.71406 kcal/mol@LB@Unfolding Energy - sRNA 7.56159 kcal/mol@LB@@LB@Position - mRNA 88 -- 102@LB@Position - sRNA 6 -- 22@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 42 |
0.001686 |
0.1293 |
b2733 |
mutS |
-6.21 |
0.172669 |
203 -- 222 |
25 -- 42 |
methyl-directed mismatch repair protein |
|
_____________202__________________223\n_____________|____________________|\n5'-GAU...CCCAU______AA_________U__ACGCC...UGG-3'\n______________GAGUGC__UAGAAAAUU_CG\n______________:||::|__||:||||||_||\n______________UUCGUG__AUUUUUUAA_GC\n3'-UUU...CGUUC______A_____________AAUGU...CAA-5'\n_____________|____________________|\n_____________43___________________24\n |
213 -- 219 |
27 -- 33 |
-10.4027 kcal/mol |
2.54535 kcal/mol |
1.64855 kcal/mol |
202 223@LB@ | |@LB@5'-GAU...CCCAU AA U ACGCC...UGG-3'@LB@ GAGUGC UAGAAAAUU CG@LB@ :||::| ||:|||||| ||@LB@ UUCGUG AUUUUUUAA GC@LB@3'-UUU...CGUUC A AAUGU...CAA-5'@LB@ | |@LB@ 43 24@LB@@LB@@LB@Energy -6.21 kcal/mol@LB@Hybridization Energy -10.4027 kcal/mol@LB@Unfolding Energy - mRNA 2.54535 kcal/mol@LB@Unfolding Energy - sRNA 1.64855 kcal/mol@LB@@LB@Position - mRNA 203 -- 222@LB@Position - sRNA 25 -- 42@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 117 |
0.009786 |
0.2694 |
b1706 |
ydiU |
-6.16 |
0.177349 |
6 -- 27 |
36 -- 55 |
UPF0061 family protein |
|
_____________5______________________28\n_____________|______________________|\n______5'-UGCAA____AUCAUU____________GAUAC...AUA-3'\n______________UUGC______GCGGGAGGCAUU\n______________||||______||::||:|||:|\n______________AACG______CGUUCUUCGUGA\n3'-UUU...CUUUG____AAUU______________AUUUU...CAA-5'\n_____________|______________________|\n_____________56_____________________35\n |
21 -- 27 |
36 -- 42 |
-19.2761 kcal/mol |
6.93839 kcal/mol |
6.17795 kcal/mol |
5 28@LB@ | |@LB@ 5'-UGCAA AUCAUU GAUAC...AUA-3'@LB@ UUGC GCGGGAGGCAUU@LB@ |||| ||::||:|||:|@LB@ AACG CGUUCUUCGUGA@LB@3'-UUU...CUUUG AAUU AUUUU...CAA-5'@LB@ | |@LB@ 56 35@LB@@LB@@LB@Energy -6.16 kcal/mol@LB@Hybridization Energy -19.2761 kcal/mol@LB@Unfolding Energy - mRNA 6.93839 kcal/mol@LB@Unfolding Energy - sRNA 6.17795 kcal/mol@LB@@LB@Position - mRNA 6 -- 27@LB@Position - sRNA 36 -- 55@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 112 |
0.009574 |
0.2693 |
b2494 |
bepA |
-6.13 |
0.179960 |
208 -- 220 |
29 -- 41 |
OM protein maintenance and assembly metalloprotease and chaperone periplasmic |
|
_____________207___________221\n_____________|_____________|\n5'-UGA...GUUCA____G________AAACC...UGC-3'\n______________GGCA_UUGAAAAA\n______________:|||_||:|||||\n______________UCGU_AAUUUUUU\n3'-UUU...GUUCU____G________AAGCA...CAA-5'\n_____________|_____________|\n_____________42____________28\n |
214 -- 220 |
29 -- 35 |
-11.3192 kcal/mol |
3.5632 kcal/mol |
1.62306 kcal/mol |
207 221@LB@ | |@LB@5'-UGA...GUUCA G AAACC...UGC-3'@LB@ GGCA UUGAAAAA@LB@ :||| ||:|||||@LB@ UCGU AAUUUUUU@LB@3'-UUU...GUUCU G AAGCA...CAA-5'@LB@ | |@LB@ 42 28@LB@@LB@@LB@Energy -6.13 kcal/mol@LB@Hybridization Energy -11.3192 kcal/mol@LB@Unfolding Energy - mRNA 3.5632 kcal/mol@LB@Unfolding Energy - sRNA 1.62306 kcal/mol@LB@@LB@Position - mRNA 208 -- 220@LB@Position - sRNA 29 -- 41@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 136 |
0.01308 |
0.3087 |
b0131 |
panD |
-6.12 |
0.181240 |
260 -- 282 |
17 -- 40 |
aspartate 1-decarboxylase |
|
_____________259______________________283\n_____________|________________________|\n5'-AUU...GACCU_____AU_________________UUGAC...UUG-3'\n______________GCACU__GAAGGUUC_UUGCGCCA\n______________|||||__:||::|||_||:|:|||\n______________CGUGA__UUUUUAAG_AAUGUGGU\n3'-UUU...UUCUU_____AU________C________CCUUU...CAA-5'\n_____________|________________________|\n_____________41_______________________16\n |
268 -- 274 |
26 -- 32 |
-23.1255 kcal/mol |
7.80932 kcal/mol |
9.19627 kcal/mol |
259 283@LB@ | |@LB@5'-AUU...GACCU AU UUGAC...UUG-3'@LB@ GCACU GAAGGUUC UUGCGCCA@LB@ ||||| :||::||| ||:|:|||@LB@ CGUGA UUUUUAAG AAUGUGGU@LB@3'-UUU...UUCUU AU C CCUUU...CAA-5'@LB@ | |@LB@ 41 16@LB@@LB@@LB@Energy -6.12 kcal/mol@LB@Hybridization Energy -23.1255 kcal/mol@LB@Unfolding Energy - mRNA 7.80932 kcal/mol@LB@Unfolding Energy - sRNA 9.19627 kcal/mol@LB@@LB@Position - mRNA 260 -- 282@LB@Position - sRNA 17 -- 40@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 53 |
0.002646 |
0.1597 |
b1704 |
aroH |
-6.03 |
0.190589 |
111 -- 120 |
31 -- 40 |
3-deoxy-D-arabino-heptulosonate-7-phosphate synthase tryptophan repressible |
|
_____________110________121\n_____________|__________|\n5'-CCA...ACCUC__________UCAGC...CCC-3'\n______________GCACUUGAAA\n______________||||||:|||\n______________CGUGAAUUUU\n3'-UUU...UUCUU__________UUAAG...CAA-5'\n_____________|__________|\n_____________41_________30\n |
114 -- 120 |
31 -- 37 |
-11.574 kcal/mol |
3.92769 kcal/mol |
1.61955 kcal/mol |
110 121@LB@ | |@LB@5'-CCA...ACCUC UCAGC...CCC-3'@LB@ GCACUUGAAA@LB@ ||||||:|||@LB@ CGUGAAUUUU@LB@3'-UUU...UUCUU UUAAG...CAA-5'@LB@ | |@LB@ 41 30@LB@@LB@@LB@Energy -6.03 kcal/mol@LB@Hybridization Energy -11.574 kcal/mol@LB@Unfolding Energy - mRNA 3.92769 kcal/mol@LB@Unfolding Energy - sRNA 1.61955 kcal/mol@LB@@LB@Position - mRNA 111 -- 120@LB@Position - sRNA 31 -- 40@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 75 |
0.004391 |
0.1886 |
b3708 |
tnaA |
-6.02 |
0.191179 |
273 -- 300 |
28 -- 53 |
tryptophanase/L-cysteine desulfhydrase PLP-dependent |
|
_____________272_________________________300\n_____________|___________________________|\n5'-ACC...CUCGC_____UC__G________A___UU____-3'\n______________GCUUA__GU_AAGAGGCA_UUA__AAAU\n______________|||||__|:_||||:|||_|||__||||\n______________CGAAU__CG_UUCUUCGU_AAU__UUUA\n3'-UUU...UUGAA_____U____________G___UU____AGCAA...CAA-5'\n_____________|____________________________|\n_____________54___________________________27\n |
284 -- 290 |
38 -- 44 |
-17.9242 kcal/mol |
5.66853 kcal/mol |
6.23468 kcal/mol |
272 300@LB@ | |@LB@5'-ACC...CUCGC UC G A UU -3'@LB@ GCUUA GU AAGAGGCA UUA AAAU@LB@ ||||| |: ||||:||| ||| ||||@LB@ CGAAU CG UUCUUCGU AAU UUUA@LB@3'-UUU...UUGAA U G UU AGCAA...CAA-5'@LB@ | |@LB@ 54 27@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -17.9242 kcal/mol@LB@Unfolding Energy - mRNA 5.66853 kcal/mol@LB@Unfolding Energy - sRNA 6.23468 kcal/mol@LB@@LB@Position - mRNA 273 -- 300@LB@Position - sRNA 28 -- 53@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 172 |
0.01959 |
0.3668 |
b0336 |
codB |
-6.02 |
0.190787 |
88 -- 108 |
28 -- 40 |
cytosine transporter |
|
_____________87____________________109\n_____________|_____________________|\n5'-CCA...UUUUU_____CAUUCAUA________AUAUU...UUU-3'\n______________GCACU________UAAAAAAU\n______________|||||________||||||||\n______________CGUGA________AUUUUUUA\n3'-UUU...UUCUU_____________________AGCAA...CAA-5'\n_____________|_____________________|\n_____________41____________________27\n |
102 -- 108 |
28 -- 34 |
-8.50412 kcal/mol |
0.843154 kcal/mol |
1.63611 kcal/mol |
87 109@LB@ | |@LB@5'-CCA...UUUUU CAUUCAUA AUAUU...UUU-3'@LB@ GCACU UAAAAAAU@LB@ ||||| ||||||||@LB@ CGUGA AUUUUUUA@LB@3'-UUU...UUCUU AGCAA...CAA-5'@LB@ | |@LB@ 41 27@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -8.50412 kcal/mol@LB@Unfolding Energy - mRNA 0.843154 kcal/mol@LB@Unfolding Energy - sRNA 1.63611 kcal/mol@LB@@LB@Position - mRNA 88 -- 108@LB@Position - sRNA 28 -- 40@LB@Position Seed - mRNA 102 -- 108@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 168 |
0.01885 |
0.3614 |
b1792 |
yeaO |
-5.97 |
0.195997 |
133 -- 142 |
25 -- 34 |
DUF488 family protein |
|
_____________132________143\n_____________|__________|\n5'-UGU...AGACA__________CUAAU...CCG-3'\n______________AAGAAAUUCG\n______________||:|||||||\n______________UUUUUUAAGC\n3'-UUU...GUGAA__________AAUGU...CAA-5'\n_____________|__________|\n_____________35_________24\n |
136 -- 142 |
25 -- 31 |
-8.43117 kcal/mol |
1.28773 kcal/mol |
1.16883 kcal/mol |
132 143@LB@ | |@LB@5'-UGU...AGACA CUAAU...CCG-3'@LB@ AAGAAAUUCG@LB@ ||:|||||||@LB@ UUUUUUAAGC@LB@3'-UUU...GUGAA AAUGU...CAA-5'@LB@ | |@LB@ 35 24@LB@@LB@@LB@Energy -5.97 kcal/mol@LB@Hybridization Energy -8.43117 kcal/mol@LB@Unfolding Energy - mRNA 1.28773 kcal/mol@LB@Unfolding Energy - sRNA 1.16883 kcal/mol@LB@@LB@Position - mRNA 133 -- 142@LB@Position - sRNA 25 -- 34@LB@Position Seed - mRNA 136 -- 142@LB@Position Seed - sRNA 25 -- 31@LB@ |
