| 13 |
0.002947 |
0.4469 |
lmo0233 |
N/A |
-20.88 |
0.006381 |
238 -- 276 |
156 -- 198 |
DNA repair protein RadA |
|
_____________237_____________________________________________277\n_____________|_______________________________________________|\n5'-AAA...GUGUC______GU__________________AA___________________UCCGA...CNN-3'\n______________AGGCAU__GGAUAUGAAU____CGGC__AAUG_GAUGG__GAAAAUG\n______________||||||__:||:|||||:____||||__||||_||||:__|||||::\n______________UCCGUA__UCUGUACUUG____GCCG__UUAC_CUACU__CUUUUGU\n3'-GUU...CCUAC__________________AUGU____G_____U_____UA_______UUAUU...GGA-5'\n_____________|_______________________________________________|\n_____________199_____________________________________________155\n |
271 -- 277 |
155 -- 161 |
-35.3246 kcal/mol |
8.28493 kcal/mol |
13.976 kcal/mol |
237 277@LB@ | |@LB@5'-AAA...GUGUC GU AA UCCGA...CNN-3'@LB@ AGGCAU GGAUAUGAAU CGGC AAUG GAUGG GAAAAUG@LB@ |||||| :||:|||||: |||| |||| ||||: |||||::@LB@ UCCGUA UCUGUACUUG GCCG UUAC CUACU CUUUUGU@LB@3'-GUU...CCUAC AUGU G U UA UUAUU...GGA-5'@LB@ | |@LB@ 199 155@LB@@LB@@LB@Energy -20.88 kcal/mol@LB@Hybridization Energy -35.3246 kcal/mol@LB@Unfolding Energy - mRNA 8.28493 kcal/mol@LB@Unfolding Energy - sRNA 13.976 kcal/mol@LB@@LB@Position - mRNA 238 -- 276@LB@Position - sRNA 156 -- 198@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 155 -- 161@LB@ |
| 16 |
0.003215 |
0.4469 |
lmo1403 |
mutS |
-20.74 |
0.006867 |
183 -- 222 |
169 -- 209 |
DNA mismatch repair protein MutS |
|
_____________182________________223\n_____________|__________________|\n5'-ACG...UGCUA__________________AGAAG...UGU-3'\n______________UAAUGAGA_GGAUGAAAA\n______________:|||||||_|:|||||||\n______________GUUACUCU_CUUACUUUU\n3'-GUU...UGCCG________A_________GUUUA...GGA-5'\n_____________|__________________|\n_____________210________________168\n |
172 -- 178 |
157 -- 163 |
-16.7756 kcal/mol |
1.79354 kcal/mol |
0.933292 kcal/mol |
182 223@LB@ | |@LB@5'-ACG...UGCUA AGAAG...UGU-3'@LB@ UAAUGAGA GGAUGAAAA@LB@ :||||||| |:|||||||@LB@ GUUACUCU CUUACUUUU@LB@3'-GUU...UGCCG A GUUUA...GGA-5'@LB@ | |@LB@ 210 168@LB@@LB@@LB@Energy -20.74 kcal/mol@LB@Hybridization Energy -16.7756 kcal/mol@LB@Unfolding Energy - mRNA 1.79354 kcal/mol@LB@Unfolding Energy - sRNA 0.933292 kcal/mol@LB@@LB@Position - mRNA 183 -- 222@LB@Position - sRNA 169 -- 209@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 157 -- 163@LB@ |
| 23 |
0.00382 |
0.4469 |
lmo1572 |
accA |
-20.61 |
0.007329 |
192 -- 226 |
157 -- 188 |
acetyl-CoA carboxylase carboxyltransferase subunit alpha |
|
_____________191______________________________________________________________________________227\n_____________|________________________________________________________________________________|\n5'-AGG...UUUAA__AU______GAAA__A____GA_____________A__UG__________________G___________AUU______ACCGA...CCA-3'\n______________GC__UCAUGU____GC_CCUG___GUAG_GGGGUGA_GU_______________AUGGC_AAUGAGAUGGA___UGAGAA\n______________||__||||||____||_|||:___:||:_|||:|||_|:_______________|:|||_|||||||||:|___|||:||\n______________CG__AGUACA____CG_GGAU___UAUU_CCCUACU_CG_______________UGCCG_UUACUCUACUU___ACUUUU\n3'-GUU...CGCAA__GU______AGCC__C____ACG____G_______C__UAUCUGUACUUGAUG_____G____________________GUUUA...GGA-5'\n_____________|________________________________________________________________________________|\n_____________189______________________________________________________________________________156\n |
211 -- 217 |
163 -- 169 |
-59.1532 kcal/mol |
18.9584 kcal/mol |
22.6787 kcal/mol |
191 227@LB@ | |@LB@5'-AGG...UUUAA AU GAAA A GA A UG G AUU ACCGA...CCA-3'@LB@ GC UCAUGU GC CCUG GUAG GGGGUGA GU AUGGC AAUGAGAUGGA UGAGAA@LB@ || |||||| || |||: :||: |||:||| |: |:||| |||||||||:| |||:||@LB@ CG AGUACA CG GGAU UAUU CCCUACU CG UGCCG UUACUCUACUU ACUUUU@LB@3'-GUU...CGCAA GU AGCC C ACG G C UAUCUGUACUUGAUG G GUUUA...GGA-5'@LB@ | |@LB@ 189 156@LB@@LB@@LB@Energy -20.61 kcal/mol@LB@Hybridization Energy -59.1532 kcal/mol@LB@Unfolding Energy - mRNA 18.9584 kcal/mol@LB@Unfolding Energy - sRNA 22.6787 kcal/mol@LB@@LB@Position - mRNA 192 -- 226@LB@Position - sRNA 157 -- 188@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 163 -- 169@LB@ |
| 25 |
0.004689 |
0.5029 |
lmo1584 |
N/A |
-20.33 |
0.008463 |
183 -- 211 |
169 -- 209 |
|
|
_____________182___________212\n_____________|_____________|\n5'-GAA...GGCGC_____________AAAUG...CUG-3'\n______________ACAUGGCUAAUGA\n______________|||:|||:|||||\n______________UGUGCCGGUUACU\n3'-GUU...CUUGA_____________CUACU...GGA-5'\n_____________|_____________|\n_____________210___________168\n |
205 -- 211 |
169 -- 175 |
-19.4521 kcal/mol |
2.17631 kcal/mol |
6.15322 kcal/mol |
182 212@LB@ | |@LB@5'-GAA...GGCGC AAAUG...CUG-3'@LB@ ACAUGGCUAAUGA@LB@ |||:|||:|||||@LB@ UGUGCCGGUUACU@LB@3'-GUU...CUUGA CUACU...GGA-5'@LB@ | |@LB@ 210 168@LB@@LB@@LB@Energy -20.33 kcal/mol@LB@Hybridization Energy -19.4521 kcal/mol@LB@Unfolding Energy - mRNA 2.17631 kcal/mol@LB@Unfolding Energy - sRNA 6.15322 kcal/mol@LB@@LB@Position - mRNA 183 -- 211@LB@Position - sRNA 169 -- 209@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 169 -- 175@LB@ |
| 75 |
0.01961 |
0.6733 |
lmo0383 |
N/A |
-20.23 |
0.008871 |
224 -- 265 |
150 -- 186 |
methylmalonate-semialdehyde dehydrogenase |
|
_____________223________________________________________266\n_____________|__________________________________________|\n5'-UUC...UUAAA_______AUUG_____G______UC___A_U___________AUAUG...AAG-3'\n______________GAAUUAU____ACGGC_AAUGGG__GAG_G_AAGACAGAUAA\n______________|||:||:____|||||_||||:|__||:_|_||:|||:||||\n______________CUUGAUG____UGCCG_UUACUC__CUU_C_UUUUGUUUAUU\n3'-GUU...CUGUA________________G______UA___A_____________ACUAA...GGA-5'\n_____________|__________________________________________|\n_____________187________________________________________149\n |
257 -- 263 |
152 -- 158 |
-34.2826 kcal/mol |
8.25616 kcal/mol |
13.66 kcal/mol |
223 266@LB@ | |@LB@5'-UUC...UUAAA AUUG G UC A U AUAUG...AAG-3'@LB@ GAAUUAU ACGGC AAUGGG GAG G AAGACAGAUAA@LB@ |||:||: ||||| ||||:| ||: | ||:|||:||||@LB@ CUUGAUG UGCCG UUACUC CUU C UUUUGUUUAUU@LB@3'-GUU...CUGUA G UA A ACUAA...GGA-5'@LB@ | |@LB@ 187 149@LB@@LB@@LB@Energy -20.23 kcal/mol@LB@Hybridization Energy -34.2826 kcal/mol@LB@Unfolding Energy - mRNA 8.25616 kcal/mol@LB@Unfolding Energy - sRNA 13.66 kcal/mol@LB@@LB@Position - mRNA 224 -- 265@LB@Position - sRNA 150 -- 186@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 152 -- 158@LB@ |
| 129 |
0.03464 |
0.6968 |
lmo0756 |
N/A |
-20.18 |
0.009099 |
160 -- 214 |
175 -- 223 |
ABC transporter ATP-binding protein |
|
_____________159__________215\n_____________|____________|\n5'-AGU...AUAGA_______G____AGAAG...UUU-3'\n______________GACGGGA_GGGG\n______________:||||||_|:||\n______________UUGCCCU_CUCC\n3'-GUU...ACGUA_______A____GUAUC...GGA-5'\n_____________|____________|\n_____________224__________174\n |
181 -- 187 |
201 -- 207 |
-16.8336 kcal/mol |
1.76926 kcal/mol |
3.58567 kcal/mol |
159 215@LB@ | |@LB@5'-AGU...AUAGA G AGAAG...UUU-3'@LB@ GACGGGA GGGG@LB@ :|||||| |:||@LB@ UUGCCCU CUCC@LB@3'-GUU...ACGUA A GUAUC...GGA-5'@LB@ | |@LB@ 224 174@LB@@LB@@LB@Energy -20.18 kcal/mol@LB@Hybridization Energy -16.8336 kcal/mol@LB@Unfolding Energy - mRNA 1.76926 kcal/mol@LB@Unfolding Energy - sRNA 3.58567 kcal/mol@LB@@LB@Position - mRNA 160 -- 214@LB@Position - sRNA 175 -- 223@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 201 -- 207@LB@ |
| 30 |
0.00607 |
0.5445 |
lmo0619 |
N/A |
-20.15 |
0.009257 |
186 -- 283 |
154 -- 223 |
lmo0619 |
|
_____________185_____________________________________________________________________________________________________284\n_____________|_______________________________________________________________________________________________________|\n5'-UAU...AACAG_____G__GC____CUU___________AAAAAG_____AGUAAAUUACUUCA_______AAAAAAGCGACCAAUU_________GUAUUA____________GGCGG...CAA-3'\n______________UCGGG_GU____GC___AU_GGAUGGGG______AGACA______________UGAAUUA________________UAC_GCCAA_______GAUGAAAACGA\n______________|||||_|:____||___|:_|||||:||______|||||______________||||:||________________:||_|||||_______:||||||||:|\n______________AGCCC_CG____CG___UG_CCUACUCC______UCUGU______________ACUUGAU________________GUG_CGGUU_______UUACUUUUGUU\n3'-GUU...GUACA_____G__GAUA__UAU__C________GUA________________________________________________C_____ACUCUAC___________UAUUA...GGA-5'\n_____________|_______________________________________________________________________________________________________|\n_____________224_____________________________________________________________________________________________________153\n |
277 -- 283 |
154 -- 160 |
-48.8019 kcal/mol |
13.571 kcal/mol |
22.2956 kcal/mol |
185 284@LB@ | |@LB@5'-UAU...AACAG G GC CUU AAAAAG AGUAAAUUACUUCA AAAAAAGCGACCAAUU GUAUUA GGCGG...CAA-3'@LB@ UCGGG GU GC AU GGAUGGGG AGACA UGAAUUA UAC GCCAA GAUGAAAACGA@LB@ ||||| |: || |: |||||:|| ||||| ||||:|| :|| ||||| :||||||||:|@LB@ AGCCC CG CG UG CCUACUCC UCUGU ACUUGAU GUG CGGUU UUACUUUUGUU@LB@3'-GUU...GUACA G GAUA UAU C GUA C ACUCUAC UAUUA...GGA-5'@LB@ | |@LB@ 224 153@LB@@LB@@LB@Energy -20.15 kcal/mol@LB@Hybridization Energy -48.8019 kcal/mol@LB@Unfolding Energy - mRNA 13.571 kcal/mol@LB@Unfolding Energy - sRNA 22.2956 kcal/mol@LB@@LB@Position - mRNA 186 -- 283@LB@Position - sRNA 154 -- 223@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 154 -- 160@LB@ |
| 47 |
0.01063 |
0.599 |
lmo0138 |
N/A |
-20.04 |
0.009767 |
146 -- 210 |
158 -- 213 |
lmo0138 |
|
_____________145_________________________________________________________________________211\n_____________|___________________________________________________________________________|\n5'-AAA...AAUGC____G_____U_____UAA_____A____UUCAUUAUU________________A___GCA___A__________UAAAA...GCA-3'\n______________GUGC__AUGC_AUAAU___GGGAU_AGGU_________AUAGACA_GAG__AUG_GGC____GA_AUGAGUGAAA\n______________|:||__||||_||||:___|||||_|||:_________|||||||_||:__|::_|||____||_||||:|||||\n______________CGCG__UACG_UAUUG___CCCUA_UCCG_________UAUCUGU_CUU__UGU_CCG____CU_UACUUACUUU\n3'-GUU...AAGCC____GA__________________C____________________A___GA___G___GUUA__C__________UGUUU...GGA-5'\n_____________|___________________________________________________________________________|\n_____________214_________________________________________________________________________157\n |
204 -- 210 |
158 -- 164 |
-47.7003 kcal/mol |
15.2802 kcal/mol |
21.9717 kcal/mol |
145 211@LB@ | |@LB@5'-AAA...AAUGC G U UAA A UUCAUUAUU A GCA A UAAAA...GCA-3'@LB@ GUGC AUGC AUAAU GGGAU AGGU AUAGACA GAG AUG GGC GA AUGAGUGAAA@LB@ |:|| |||| ||||: ||||| |||: ||||||| ||: |:: ||| || ||||:|||||@LB@ CGCG UACG UAUUG CCCUA UCCG UAUCUGU CUU UGU CCG CU UACUUACUUU@LB@3'-GUU...AAGCC GA C A GA G GUUA C UGUUU...GGA-5'@LB@ | |@LB@ 214 157@LB@@LB@@LB@Energy -20.04 kcal/mol@LB@Hybridization Energy -47.7003 kcal/mol@LB@Unfolding Energy - mRNA 15.2802 kcal/mol@LB@Unfolding Energy - sRNA 21.9717 kcal/mol@LB@@LB@Position - mRNA 146 -- 210@LB@Position - sRNA 158 -- 213@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 158 -- 164@LB@ |
| 80 |
0.02141 |
0.6733 |
lmo1147 |
N/A |
-19.90 |
0.010431 |
143 -- 214 |
146 -- 207 |
cobalamin biosynthesis protein CopB |
|
_____________142____________________________________________________________________215\n_____________|______________________________________________________________________|\n5'-UAU...AUUUG_______AUUUUUA________A____AUC____UGU_______A_______GAAUGGAC__________UGAUG...CAA-3'\n______________AGCGGGA_______GGGGC_UA_ACGU___GGAU___UACGCGG__AAUGAG________AUGAGUGAAA\n______________|:|||||_______|:|||_||_||:|___|:|:___|||:|||__||||||________||||:|||||\n______________UUGCCCU_______CUCCG_AU_UGUA___CUUG___AUGUGCC__UUACUC________UACUUACUUU\n3'-GUU...ACGUA_______A___________U__C_____________________GG________________________UGUUU...GGA-5'\n_____________|______________________________________________________________________|\n_____________208____________________________________________________________________145\n |
204 -- 210 |
158 -- 164 |
-42.8674 kcal/mol |
12.3523 kcal/mol |
18.5828 kcal/mol |
142 215@LB@ | |@LB@5'-UAU...AUUUG AUUUUUA A AUC UGU A GAAUGGAC UGAUG...CAA-3'@LB@ AGCGGGA GGGGC UA ACGU GGAU UACGCGG AAUGAG AUGAGUGAAA@LB@ |:||||| |:||| || ||:| |:|: |||:||| |||||| ||||:|||||@LB@ UUGCCCU CUCCG AU UGUA CUUG AUGUGCC UUACUC UACUUACUUU@LB@3'-GUU...ACGUA A U C GG UGUUU...GGA-5'@LB@ | |@LB@ 208 145@LB@@LB@@LB@Energy -19.90 kcal/mol@LB@Hybridization Energy -42.8674 kcal/mol@LB@Unfolding Energy - mRNA 12.3523 kcal/mol@LB@Unfolding Energy - sRNA 18.5828 kcal/mol@LB@@LB@Position - mRNA 143 -- 214@LB@Position - sRNA 146 -- 207@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 158 -- 164@LB@ |
| 46 |
0.01036 |
0.599 |
lmo2695 |
N/A |
-19.87 |
0.010617 |
150 -- 211 |
156 -- 209 |
dihydroxyacetone kinase subunit DhaK |
|
_____________149_________________________________________________________________212\n_____________|___________________________________________________________________|\n5'-UUA...UUCUA____A____AAU_____________________UAUAAAGGA____UUU__UC______________UCUUA...CUC-3'\n______________GUAA_GGGA___UGAGGUA_AGA___GGACUAU_________GGUU___UG__AGAUGAA_GAAGAU\n______________:|||_||||___|||||:|_|||___|:||||:_________||::___||__|||||||_|||:|:\n______________UAUU_CCCU___ACUCCGU_UCU___CUUGAUG_________CCGG___AC__UCUACUU_CUUUUG\n3'-GUU...AUACG____G______________A___GUA_______UG___________UU____________A______UUUAU...GGA-5'\n_____________|___________________________________________________________________|\n_____________210_________________________________________________________________155\n |
199 -- 205 |
163 -- 169 |
-36.4151 kcal/mol |
9.16424 kcal/mol |
18.7057 kcal/mol |
149 212@LB@ | |@LB@5'-UUA...UUCUA A AAU UAUAAAGGA UUU UC UCUUA...CUC-3'@LB@ GUAA GGGA UGAGGUA AGA GGACUAU GGUU UG AGAUGAA GAAGAU@LB@ :||| |||| |||||:| ||| |:||||: ||:: || ||||||| |||:|:@LB@ UAUU CCCU ACUCCGU UCU CUUGAUG CCGG AC UCUACUU CUUUUG@LB@3'-GUU...AUACG G A GUA UG UU A UUUAU...GGA-5'@LB@ | |@LB@ 210 155@LB@@LB@@LB@Energy -19.87 kcal/mol@LB@Hybridization Energy -36.4151 kcal/mol@LB@Unfolding Energy - mRNA 9.16424 kcal/mol@LB@Unfolding Energy - sRNA 18.7057 kcal/mol@LB@@LB@Position - mRNA 150 -- 211@LB@Position - sRNA 156 -- 209@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 163 -- 169@LB@ |
