| 74 |
0.005527 |
0.2441 |
bsu14880 |
ctaB |
-11.75 |
0.115909 |
1 -- 10 |
34 -- 43 |
protoheme IX farnesyltransferase 2 |
|
______________1_________11\n______________|_________|\n___________5'-__________AAUAA...UCG-3'\n______________GUCUGAUAGA\n______________:|||||||||\n______________UAGACUAUCU\n3'-UUU...AGAAC__________CCCCA...AUA-5'\n_____________|__________|\n_____________44_________33\n |
4 -- 10 |
34 -- 40 |
-13.2371 kcal/mol |
0.533082 kcal/mol |
0.957751 kcal/mol |
1 11@LB@ | |@LB@ 5'- AAUAA...UCG-3'@LB@ GUCUGAUAGA@LB@ :|||||||||@LB@ UAGACUAUCU@LB@3'-UUU...AGAAC CCCCA...AUA-5'@LB@ | |@LB@ 44 33@LB@@LB@@LB@Energy -11.75 kcal/mol@LB@Hybridization Energy -13.2371 kcal/mol@LB@Unfolding Energy - mRNA 0.533082 kcal/mol@LB@Unfolding Energy - sRNA 0.957751 kcal/mol@LB@@LB@Position - mRNA 1 -- 10@LB@Position - sRNA 34 -- 43@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 150 |
0.01344 |
0.2966 |
bsu27040 |
levG |
-16.98 |
0.011562 |
166 -- 191 |
30 -- 50 |
PTS system-fructose-specific transporter subunit IID |
|
_____________165_________________________192\n_____________|___________________________|\n5'-UUC...AUGAU_________GCCUAAAC__________GAAGA...CAA-3'\n______________GAUCUUGAU________GAU_GAGGGG\n______________|||||||||________|||_||||||\n______________CUAGAACUA________CUA_CUCCCC\n3'-UUU...AAAGC_________GA_________U______AACCC...AUA-5'\n_____________|___________________________|\n_____________51__________________________29\n |
168 -- 174 |
42 -- 48 |
-23.2775 kcal/mol |
5.32128 kcal/mol |
0.974272 kcal/mol |
165 192@LB@ | |@LB@5'-UUC...AUGAU GCCUAAAC GAAGA...CAA-3'@LB@ GAUCUUGAU GAU GAGGGG@LB@ ||||||||| ||| ||||||@LB@ CUAGAACUA CUA CUCCCC@LB@3'-UUU...AAAGC GA U AACCC...AUA-5'@LB@ | |@LB@ 51 29@LB@@LB@@LB@Energy -16.98 kcal/mol@LB@Hybridization Energy -23.2775 kcal/mol@LB@Unfolding Energy - mRNA 5.32128 kcal/mol@LB@Unfolding Energy - sRNA 0.974272 kcal/mol@LB@@LB@Position - mRNA 166 -- 191@LB@Position - sRNA 30 -- 50@LB@Position Seed - mRNA 168 -- 174@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 9 |
8.212e-05 |
0.03044 |
bsu07800 |
treP |
-22.21 |
0.000470 |
182 -- 210 |
21 -- 52 |
PTS system-trehalose-specific transporter subunit EIIBC |
|
_____________181____________________________________211\n_____________|______________________________________|\n5'-UUA...AAAAA_____AC__________________GGCAUG_______UGAAC...UUG-3'\n______________CGGAU___________GGAGGGGUU______GGGGAAC\n______________|||||___________:||||||||______|||||||\n______________GCCUA___________UCUCCCCAA______CCCCUUG\n3'-UUU...AAAAA_____GAACUAGACUA______________________UCUCU...AUA-5'\n_____________|______________________________________|\n_____________53_____________________________________20\n |
204 -- 210 |
21 -- 27 |
-29.9746 kcal/mol |
4.99416 kcal/mol |
2.77037 kcal/mol |
181 211@LB@ | |@LB@5'-UUA...AAAAA AC GGCAUG UGAAC...UUG-3'@LB@ CGGAU GGAGGGGUU GGGGAAC@LB@ ||||| :|||||||| |||||||@LB@ GCCUA UCUCCCCAA CCCCUUG@LB@3'-UUU...AAAAA GAACUAGACUA UCUCU...AUA-5'@LB@ | |@LB@ 53 20@LB@@LB@@LB@Energy -22.21 kcal/mol@LB@Hybridization Energy -29.9746 kcal/mol@LB@Unfolding Energy - mRNA 4.99416 kcal/mol@LB@Unfolding Energy - sRNA 2.77037 kcal/mol@LB@@LB@Position - mRNA 182 -- 210@LB@Position - sRNA 21 -- 52@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 142 |
0.01236 |
0.2883 |
bsu37940 |
ywdJ |
-14.78 |
0.033255 |
157 -- 193 |
27 -- 52 |
purine permease YwdJ |
|
_____________156___________________________________194\n_____________|_____________________________________|\n5'-GGA...GGAAA____GAG____U_______UUUUAAAG____A_____AGCUU...ACU-3'\n______________CGGA___UCUU_AUUUGAU________AGAG_GGUUG\n______________||||___||||_||:||||________||||_|||||\n______________GCCU___AGAA_UAGACUA________UCUC_CCAAC\n3'-UUU...AAAAA___________C___________________C_____CCCUU...AUA-5'\n_____________|_____________________________________|\n_____________53____________________________________26\n |
169 -- 175 |
37 -- 43 |
-23.5373 kcal/mol |
7.77274 kcal/mol |
0.980744 kcal/mol |
156 194@LB@ | |@LB@5'-GGA...GGAAA GAG U UUUUAAAG A AGCUU...ACU-3'@LB@ CGGA UCUU AUUUGAU AGAG GGUUG@LB@ |||| |||| ||:|||| |||| |||||@LB@ GCCU AGAA UAGACUA UCUC CCAAC@LB@3'-UUU...AAAAA C C CCCUU...AUA-5'@LB@ | |@LB@ 53 26@LB@@LB@@LB@Energy -14.78 kcal/mol@LB@Hybridization Energy -23.5373 kcal/mol@LB@Unfolding Energy - mRNA 7.77274 kcal/mol@LB@Unfolding Energy - sRNA 0.980744 kcal/mol@LB@@LB@Position - mRNA 157 -- 193@LB@Position - sRNA 27 -- 52@LB@Position Seed - mRNA 169 -- 175@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 147 |
0.013 |
0.2949 |
bsu12910 |
proG |
-10.46 |
0.183122 |
211 -- 241 |
23 -- 53 |
pyrroline-5-carboxylate reductase 3 |
|
_____________210________________________________242\n_____________|__________________________________|\n5'-UUC...ACAGA_____________G____U___CAGCA___C___UAUGA...UUG-3'\n______________UUGGAUU__GAUU_GAUA__GG_____UGG_GGA\n______________|:||||:__|||:_||||__||_____|||_|||\n______________AGCCUAG__CUAG_CUAU__CC_____ACC_CCU\n3'-UUU...AAAAA_______AA____A____CU__CCA_________UGUCU...AUA-5'\n_____________|__________________________________|\n_____________54_________________________________22\n |
211 -- 217 |
47 -- 53 |
-18.7228 kcal/mol |
7.27559 kcal/mol |
0.987321 kcal/mol |
210 242@LB@ | |@LB@5'-UUC...ACAGA G U CAGCA C UAUGA...UUG-3'@LB@ UUGGAUU GAUU GAUA GG UGG GGA@LB@ |:||||: |||: |||| || ||| |||@LB@ AGCCUAG CUAG CUAU CC ACC CCU@LB@3'-UUU...AAAAA AA A CU CCA UGUCU...AUA-5'@LB@ | |@LB@ 54 22@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -18.7228 kcal/mol@LB@Unfolding Energy - mRNA 7.27559 kcal/mol@LB@Unfolding Energy - sRNA 0.987321 kcal/mol@LB@@LB@Position - mRNA 211 -- 241@LB@Position - sRNA 23 -- 53@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 194 |
0.01929 |
0.3269 |
bsu14860 |
pycA |
-10.87 |
0.159030 |
149 -- 193 |
23 -- 51 |
pyruvate carboxylase |
|
_____________148___________________________________________194\n_____________|_____________________________________________|\n5'-GGG...GGGAA____AUUCCGCUA_______UUAUAUUCCAUUC____AAG_____GAAAA...UUG-3'\n______________GGAU_________UGAUAGA_____________GGGU___GGGGA\n______________||||_________|||||||_____________||||___|||||\n______________CCUA_________ACUAUCU_____________CCCA___CCCCU\n3'-UUU...AAAAG____GAACUAG_________C________________A_______UGUCU...AUA-5'\n_____________|_____________________________________________|\n_____________52____________________________________________22\n |
162 -- 168 |
34 -- 40 |
-22.9068 kcal/mol |
11.0566 kcal/mol |
0.980049 kcal/mol |
148 194@LB@ | |@LB@5'-GGG...GGGAA AUUCCGCUA UUAUAUUCCAUUC AAG GAAAA...UUG-3'@LB@ GGAU UGAUAGA GGGU GGGGA@LB@ |||| ||||||| |||| |||||@LB@ CCUA ACUAUCU CCCA CCCCU@LB@3'-UUU...AAAAG GAACUAG C A UGUCU...AUA-5'@LB@ | |@LB@ 52 22@LB@@LB@@LB@Energy -10.87 kcal/mol@LB@Hybridization Energy -22.9068 kcal/mol@LB@Unfolding Energy - mRNA 11.0566 kcal/mol@LB@Unfolding Energy - sRNA 0.980049 kcal/mol@LB@@LB@Position - mRNA 149 -- 193@LB@Position - sRNA 23 -- 51@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 157 |
0.01433 |
0.3008 |
bsu38150 |
qoxC |
-14.65 |
0.035334 |
274 -- 297 |
30 -- 53 |
quinol oxidase subunit 3 |
|
_____________273_______________________298\n_____________|_________________________|\n5'-ACC...UAUUC__________G____UUUU______CAG-3'\n______________UCGGGUUUUG_AUCU_____AGGGG\n______________||||:|:|||_||||_____|||||\n______________AGCCUAGAAC_UAGA_____UCCCC\n3'-UUU...AAAAA_______________CUAUC_____AACCC...AUA-5'\n_____________|_________________________|\n_____________54________________________29\n |
277 -- 283 |
44 -- 50 |
-24.1532 kcal/mol |
8.5194 kcal/mol |
0.985344 kcal/mol |
273 298@LB@ | |@LB@5'-ACC...UAUUC G UUUU CAG-3'@LB@ UCGGGUUUUG AUCU AGGGG@LB@ ||||:|:||| |||| |||||@LB@ AGCCUAGAAC UAGA UCCCC@LB@3'-UUU...AAAAA CUAUC AACCC...AUA-5'@LB@ | |@LB@ 54 29@LB@@LB@@LB@Energy -14.65 kcal/mol@LB@Hybridization Energy -24.1532 kcal/mol@LB@Unfolding Energy - mRNA 8.5194 kcal/mol@LB@Unfolding Energy - sRNA 0.985344 kcal/mol@LB@@LB@Position - mRNA 274 -- 297@LB@Position - sRNA 30 -- 53@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 29 |
0.0009972 |
0.1113 |
bsu38140 |
qoxD |
-9.49 |
0.251109 |
150 -- 190 |
24 -- 51 |
quinol oxidase subunit 4 |
|
_____________149_______________________________________191\n_____________|_________________________________________|\n5'-UUU...UGUAU_______C____UUAC___UGUCUAUCUCAU___A______GGUCU...CAG-3'\n______________GGAUUUU_AUCU____AGG____________GGG_UUGGGG\n______________||||:||_||||____||:____________|||_||||||\n______________CCUAGAA_UAGA____UCU____________CCC_AACCCC\n3'-UUU...AAAAG_______C____CUA___________________C______UUGUC...AUA-5'\n_____________|_________________________________________|\n_____________52________________________________________23\n |
150 -- 156 |
45 -- 51 |
-23.5355 kcal/mol |
13.0692 kcal/mol |
0.978921 kcal/mol |
149 191@LB@ | |@LB@5'-UUU...UGUAU C UUAC UGUCUAUCUCAU A GGUCU...CAG-3'@LB@ GGAUUUU AUCU AGG GGG UUGGGG@LB@ ||||:|| |||| ||: ||| ||||||@LB@ CCUAGAA UAGA UCU CCC AACCCC@LB@3'-UUU...AAAAG C CUA C UUGUC...AUA-5'@LB@ | |@LB@ 52 23@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -23.5355 kcal/mol@LB@Unfolding Energy - mRNA 13.0692 kcal/mol@LB@Unfolding Energy - sRNA 0.978921 kcal/mol@LB@@LB@Position - mRNA 150 -- 190@LB@Position - sRNA 24 -- 51@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 137 |
0.01211 |
0.2883 |
bsu27850 |
nadA |
-8.79 |
0.309443 |
168 -- 191 |
32 -- 52 |
quinolinate synthase A |
|
_____________167_______________________192\n_____________|_________________________|\n5'-UAC...UGUUA__UU___AAA__A____________AAUGC...UUA-3'\n______________CG__AUC___UG_AUCU_GUGGAGG\n______________||__|||___||_||||_:|:||||\n______________GC__UAG___AC_UAGA_UAUCUCC\n3'-UUU...AAAAA__C____A_________C_______CCAAC...AUA-5'\n_____________|_________________________|\n_____________53________________________31\n |
185 -- 191 |
32 -- 38 |
-13.8724 kcal/mol |
4.10431 kcal/mol |
0.976384 kcal/mol |
167 192@LB@ | |@LB@5'-UAC...UGUUA UU AAA A AAUGC...UUA-3'@LB@ CG AUC UG AUCU GUGGAGG@LB@ || ||| || |||| :|:||||@LB@ GC UAG AC UAGA UAUCUCC@LB@3'-UUU...AAAAA C A C CCAAC...AUA-5'@LB@ | |@LB@ 53 31@LB@@LB@@LB@Energy -8.79 kcal/mol@LB@Hybridization Energy -13.8724 kcal/mol@LB@Unfolding Energy - mRNA 4.10431 kcal/mol@LB@Unfolding Energy - sRNA 0.976384 kcal/mol@LB@@LB@Position - mRNA 168 -- 191@LB@Position - sRNA 32 -- 52@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 76 |
0.005654 |
0.2441 |
bsu14240 |
rok |
-14.05 |
0.045854 |
178 -- 222 |
9 -- 42 |
repressor rok |
|
_____________177______________________________________________223\n_____________|________________________________________________|\n5'-UUA...UUAAU______________ACAU__A_____GUUUAAUGAA____________UGCGC...UAU-3'\n______________UUUGAUAG_GGGGU____UG_GGAAU__________AGAGA__AGCUU\n______________|:||||||_|||||____||_||||:__________|||||__|||||\n______________AGACUAUC_CCCCA____AC_CCUUG__________UCUCU__UCGAA\n3'-UUU...GAACU________U___________C____________________CA_____GAGAGAUA-5'\n_____________|________________________________________________|\n_____________43_______________________________________________8\n |
179 -- 185 |
35 -- 41 |
-31.6296 kcal/mol |
7.67652 kcal/mol |
9.89852 kcal/mol |
177 223@LB@ | |@LB@5'-UUA...UUAAU ACAU A GUUUAAUGAA UGCGC...UAU-3'@LB@ UUUGAUAG GGGGU UG GGAAU AGAGA AGCUU@LB@ |:|||||| ||||| || ||||: ||||| |||||@LB@ AGACUAUC CCCCA AC CCUUG UCUCU UCGAA@LB@3'-UUU...GAACU U C CA GAGAGAUA-5'@LB@ | |@LB@ 43 8@LB@@LB@@LB@Energy -14.05 kcal/mol@LB@Hybridization Energy -31.6296 kcal/mol@LB@Unfolding Energy - mRNA 7.67652 kcal/mol@LB@Unfolding Energy - sRNA 9.89852 kcal/mol@LB@@LB@Position - mRNA 178 -- 222@LB@Position - sRNA 9 -- 42@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 35 -- 41@LB@ |
