170 |
0.01687 |
0.3104 |
b0033 |
carB |
-11.35 |
0.071227 |
1 -- 15 |
5 -- 17 |
carbamoyl-phosphate synthase large subunit |
|
______________1______________16\n______________|______________|\n___________5'-_____CC________ACGCA...CGU-3'\n______________GCAAA__UGCGUGUC\n______________:||||__||||:|||\n______________UGUUU__ACGCGCAG\n3'-UUU...ACUAU_______________AAAG-5'\n_____________|_______________|\n_____________18______________4\n |
9 -- 15 |
5 -- 11 |
-15.984 kcal/mol |
3.41554 kcal/mol |
1.22241 kcal/mol |
1 16@LB@ | |@LB@ 5'- CC ACGCA...CGU-3'@LB@ GCAAA UGCGUGUC@LB@ :|||| ||||:|||@LB@ UGUUU ACGCGCAG@LB@3'-UUU...ACUAU AAAG-5'@LB@ | |@LB@ 18 4@LB@@LB@@LB@Energy -11.35 kcal/mol@LB@Hybridization Energy -15.984 kcal/mol@LB@Unfolding Energy - mRNA 3.41554 kcal/mol@LB@Unfolding Energy - sRNA 1.22241 kcal/mol@LB@@LB@Position - mRNA 1 -- 15@LB@Position - sRNA 5 -- 17@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 5 -- 11@LB@ |
173 |
0.0173 |
0.3104 |
b0145 |
dksA |
-10.49 |
0.099910 |
175 -- 187 |
5 -- 21 |
transcriptional regulator of rRNA transcription; DnaK suppressor protein |
|
_____________174_______________188\n_____________|_________________|\n5'-AAU...GGAUC_________________AAGGA...AUG-3'\n______________GAUA____GUGCGUGUU\n______________||||____:||||:||:\n______________CUAU____UACGCGCAG\n3'-UUU...UACUA____UGUU_________AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
181 -- 187 |
5 -- 11 |
-14.603 kcal/mol |
2.85898 kcal/mol |
1.24955 kcal/mol |
174 188@LB@ | |@LB@5'-AAU...GGAUC AAGGA...AUG-3'@LB@ GAUA GUGCGUGUU@LB@ |||| :||||:||:@LB@ CUAU UACGCGCAG@LB@3'-UUU...UACUA UGUU AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -14.603 kcal/mol@LB@Unfolding Energy - mRNA 2.85898 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 175 -- 187@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 5 -- 11@LB@ |
178 |
0.01756 |
0.3104 |
b2017 |
yefM |
-12.99 |
0.036476 |
219 -- 231 |
5 -- 18 |
antitoxin of the YoeB-YefM toxin-antitoxin system |
|
_____________218____________232\n_____________|______________|\n5'-AUU...GCUAC______________AGAAU...AUG-3'\n______________AGCGAA_GCGCGUC\n______________|:|:||_|||||||\n______________UUGUUU_CGCGCAG\n3'-UUU...UACUA______A_______AAAG-5'\n_____________|______________|\n_____________19_____________4\n |
225 -- 231 |
5 -- 11 |
-18.6086 kcal/mol |
4.39571 kcal/mol |
1.2243 kcal/mol |
218 232@LB@ | |@LB@5'-AUU...GCUAC AGAAU...AUG-3'@LB@ AGCGAA GCGCGUC@LB@ |:|:|| |||||||@LB@ UUGUUU CGCGCAG@LB@3'-UUU...UACUA A AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -12.99 kcal/mol@LB@Hybridization Energy -18.6086 kcal/mol@LB@Unfolding Energy - mRNA 4.39571 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 219 -- 231@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 5 -- 11@LB@ |
186 |
0.01836 |
0.3104 |
b3521 |
yhjC |
-9.62 |
0.140197 |
158 -- 166 |
5 -- 13 |
LysR family putative transcriptional regulator |
|
_____________157_______167\n_____________|_________|\n5'-UUU...GCGAU_________ACUGU...UUU-3'\n______________AUGCGCGUU\n______________||||||||:\n______________UACGCGCAG\n3'-UUU...UUGUU_________AAAG-5'\n_____________|_________|\n_____________14________4\n |
160 -- 166 |
5 -- 11 |
-14.2497 kcal/mol |
3.47777 kcal/mol |
1.15134 kcal/mol |
157 167@LB@ | |@LB@5'-UUU...GCGAU ACUGU...UUU-3'@LB@ AUGCGCGUU@LB@ ||||||||:@LB@ UACGCGCAG@LB@3'-UUU...UUGUU AAAG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -9.62 kcal/mol@LB@Hybridization Energy -14.2497 kcal/mol@LB@Unfolding Energy - mRNA 3.47777 kcal/mol@LB@Unfolding Energy - sRNA 1.15134 kcal/mol@LB@@LB@Position - mRNA 158 -- 166@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 5 -- 11@LB@ |
187 |
0.01837 |
0.3104 |
b2151 |
galS |
-10.59 |
0.096282 |
222 -- 228 |
5 -- 11 |
galactose- and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor |
|
_____________221_____229\n_____________|_______|\n5'-UCU...AUGUA_______AGGCU...GUG-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
222 -- 228 |
5 -- 11 |
-14.6299 kcal/mol |
2.93004 kcal/mol |
1.11145 kcal/mol |
221 229@LB@ | |@LB@5'-UCU...AUGUA AGGCU...GUG-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -14.6299 kcal/mol@LB@Unfolding Energy - mRNA 2.93004 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 222 -- 228@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 5 -- 11@LB@ |
189 |
0.01853 |
0.3104 |
b3743 |
asnC |
-7.74 |
0.278830 |
255 -- 266 |
5 -- 18 |
transcriptional activator of asnA; autorepressor |
|
_____________254____________267\n_____________|______________|\n5'-AUU...UAAUG______________ACCGC...GCG-3'\n______________GGC_AAUGCGCG_C\n______________::|_||||||||_|\n______________UUG_UUACGCGC_G\n3'-UUU...UACUA___U________A_AAAG-5'\n_____________|______________|\n_____________19_____________4\n |
259 -- 265 |
7 -- 13 |
-14.4034 kcal/mol |
5.44099 kcal/mol |
1.2243 kcal/mol |
254 267@LB@ | |@LB@5'-AUU...UAAUG ACCGC...GCG-3'@LB@ GGC AAUGCGCG C@LB@ ::| |||||||| |@LB@ UUG UUACGCGC G@LB@3'-UUU...UACUA U A AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -7.74 kcal/mol@LB@Hybridization Energy -14.4034 kcal/mol@LB@Unfolding Energy - mRNA 5.44099 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 255 -- 266@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 7 -- 13@LB@ |
191 |
0.01886 |
0.3104 |
b3494 |
uspB |
-6.32 |
0.440313 |
280 -- 286 |
5 -- 11 |
universal stress (ethanol tolerance) protein B |
|
_____________279_____287\n_____________|_______|\n5'-AAU...ACUAC_______GUUAG...UGC-3'\n______________GCGCGUU\n______________||||||:\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
280 -- 286 |
5 -- 11 |
-11.0709 kcal/mol |
3.63469 kcal/mol |
1.11145 kcal/mol |
279 287@LB@ | |@LB@5'-AAU...ACUAC GUUAG...UGC-3'@LB@ GCGCGUU@LB@ ||||||:@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -6.32 kcal/mol@LB@Hybridization Energy -11.0709 kcal/mol@LB@Unfolding Energy - mRNA 3.63469 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 280 -- 286@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 5 -- 11@LB@ |
196 |
0.01921 |
0.3104 |
b2167 |
fruA |
-9.92 |
0.125082 |
150 -- 163 |
5 -- 22 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________149________________164\n_____________|__________________|\n5'-CGC...CGCAA__________________GACUU...AAA-3'\n______________UGAUGGC____GCGCGUC\n______________||||::|____|||||||\n______________ACUAUUG____CGCGCAG\n3'-UUU...CUACU_______UUUA_______AAAG-5'\n_____________|__________________|\n_____________23_________________4\n |
157 -- 163 |
5 -- 11 |
-18.2874 kcal/mol |
7.11819 kcal/mol |
1.25155 kcal/mol |
149 164@LB@ | |@LB@5'-CGC...CGCAA GACUU...AAA-3'@LB@ UGAUGGC GCGCGUC@LB@ ||||::| |||||||@LB@ ACUAUUG CGCGCAG@LB@3'-UUU...CUACU UUUA AAAG-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -18.2874 kcal/mol@LB@Unfolding Energy - mRNA 7.11819 kcal/mol@LB@Unfolding Energy - sRNA 1.25155 kcal/mol@LB@@LB@Position - mRNA 150 -- 163@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 5 -- 11@LB@ |
34 |
0.002145 |
0.2094 |
b1939 |
fliG |
-13.29 |
0.032191 |
145 -- 162 |
6 -- 22 |
flagellar motor switching and energizing component |
|
_____________144________________163\n_____________|__________________|\n5'-AGC...AUGUC_________UCC______GGUGG...AAG-3'\n______________UGAUAACGA___GCGCGU\n______________|||||||:|___||||||\n______________ACUAUUGUU___CGCGCA\n3'-UUU...CUACU_________UA_______GAAAG-5'\n_____________|__________________|\n_____________23_________________5\n |
147 -- 153 |
14 -- 20 |
-19.5862 kcal/mol |
5.04831 kcal/mol |
1.24718 kcal/mol |
144 163@LB@ | |@LB@5'-AGC...AUGUC UCC GGUGG...AAG-3'@LB@ UGAUAACGA GCGCGU@LB@ |||||||:| ||||||@LB@ ACUAUUGUU CGCGCA@LB@3'-UUU...CUACU UA GAAAG-5'@LB@ | |@LB@ 23 5@LB@@LB@@LB@Energy -13.29 kcal/mol@LB@Hybridization Energy -19.5862 kcal/mol@LB@Unfolding Energy - mRNA 5.04831 kcal/mol@LB@Unfolding Energy - sRNA 1.24718 kcal/mol@LB@@LB@Position - mRNA 145 -- 162@LB@Position - sRNA 6 -- 22@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 14 -- 20@LB@ |
52 |
0.004683 |
0.3024 |
b1130 |
phoP |
-12.79 |
0.039529 |
186 -- 208 |
6 -- 31 |
response regulator in two-component regulatory system with PhoQ |
|
_____________185________________________209\n_____________|__________________________|\n5'-GAG...UAAGA_________A________________ACUGG...CCA-3'\n______________CAGGGA_GA__AUAA_AAAUGCGCGU\n______________||||||_||__||||_||||||||||\n______________GUCCCU_CU__UAUU_UUUACGCGCA\n3'-UUU...CUUAA______A__AC____G__________GAAAG-5'\n_____________|__________________________|\n_____________32_________________________5\n |
202 -- 208 |
6 -- 12 |
-26.853 kcal/mol |
6.30535 kcal/mol |
7.75407 kcal/mol |
185 209@LB@ | |@LB@5'-GAG...UAAGA A ACUGG...CCA-3'@LB@ CAGGGA GA AUAA AAAUGCGCGU@LB@ |||||| || |||| ||||||||||@LB@ GUCCCU CU UAUU UUUACGCGCA@LB@3'-UUU...CUUAA A AC G GAAAG-5'@LB@ | |@LB@ 32 5@LB@@LB@@LB@Energy -12.79 kcal/mol@LB@Hybridization Energy -26.853 kcal/mol@LB@Unfolding Energy - mRNA 6.30535 kcal/mol@LB@Unfolding Energy - sRNA 7.75407 kcal/mol@LB@@LB@Position - mRNA 186 -- 208@LB@Position - sRNA 6 -- 31@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 6 -- 12@LB@ |