41 |
0.00276 |
0.2279 |
b0889 |
lrp |
-10.49 |
0.100208 |
207 -- 221 |
8 -- 21 |
leucine-responsive global transcriptional regulator |
|
_____________206_____________222\n_____________|_______________|\n5'-GUG...UGGUA_________AA____CCUGG...AGC-3'\n______________GAUAGCAAG__GCGC\n______________||||:|||:__||||\n______________CUAUUGUUU__CGCG\n3'-UUU...UACUA_________A_____CAGAAAG-5'\n_____________|_______________|\n_____________22______________7\n |
209 -- 215 |
13 -- 19 |
-15.2704 kcal/mol |
3.5472 kcal/mol |
1.23638 kcal/mol |
206 222@LB@ | |@LB@5'-GUG...UGGUA AA CCUGG...AGC-3'@LB@ GAUAGCAAG GCGC@LB@ ||||:|||: ||||@LB@ CUAUUGUUU CGCG@LB@3'-UUU...UACUA A CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -15.2704 kcal/mol@LB@Unfolding Energy - mRNA 3.5472 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 207 -- 221@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 13 -- 19@LB@ |
44 |
0.003062 |
0.2325 |
b3847 |
pepQ |
-9.98 |
0.122201 |
144 -- 157 |
8 -- 21 |
proline dipeptidase |
|
_____________143____________158\n_____________|______________|\n5'-UUG...CUCUG_____AC_______UAAGA...UUC-3'\n______________GAUGA__GAUGUGC\n______________|||:|__:|||:||\n______________CUAUU__UUACGCG\n3'-UUU...UACUA_____GU_______CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
151 -- 157 |
8 -- 14 |
-13.3112 kcal/mol |
2.09686 kcal/mol |
1.23638 kcal/mol |
143 158@LB@ | |@LB@5'-UUG...CUCUG AC UAAGA...UUC-3'@LB@ GAUGA GAUGUGC@LB@ |||:| :|||:||@LB@ CUAUU UUACGCG@LB@3'-UUU...UACUA GU CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -9.98 kcal/mol@LB@Hybridization Energy -13.3112 kcal/mol@LB@Unfolding Energy - mRNA 2.09686 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 144 -- 157@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 8 -- 14@LB@ |
58 |
0.00518 |
0.3024 |
b4068 |
yjcH |
-12.19 |
0.050580 |
228 -- 240 |
8 -- 21 |
DUF485 family inner membrane protein |
|
_____________227____________241\n_____________|______________|\n5'-ACC...GGAUA__A___________AUUUC...UGC-3'\n______________GA_GAC_AAUGCGC\n______________||_:||_|||||||\n______________CU_UUG_UUACGCG\n3'-UUU...UACUA__A___U_______CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
234 -- 240 |
8 -- 14 |
-14.481 kcal/mol |
1.05266 kcal/mol |
1.23638 kcal/mol |
227 241@LB@ | |@LB@5'-ACC...GGAUA A AUUUC...UGC-3'@LB@ GA GAC AAUGCGC@LB@ || :|| |||||||@LB@ CU UUG UUACGCG@LB@3'-UUU...UACUA A U CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -12.19 kcal/mol@LB@Hybridization Energy -14.481 kcal/mol@LB@Unfolding Energy - mRNA 1.05266 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 228 -- 240@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 8 -- 14@LB@ |
65 |
0.005951 |
0.3087 |
b0064 |
araC |
-16.15 |
0.009664 |
167 -- 213 |
8 -- 48 |
ara regulon transcriptional activator; autorepressor |
|
_____________166_____________________________________________214\n_____________|_______________________________________________|\n5'-GGA...CAAUU______U_________GGU____GU____AAAGUA____U__A____AAAAU...AUU-3'\n______________GGUUUC_UCUCUGAAU___GGGA__AUGA______UGGC_GA_GCGC\n______________::||||_|||||||||___||||__||||______|::|_:|_||||\n______________UUAAAG_AGAGACUUA___CCCU__UACU______AUUG_UU_CGCG\n3'-UUU...CGGUU______U_________AGU____AC______________U__A____CAGAAAG-5'\n_____________|_______________________________________________|\n_____________49______________________________________________7\n |
174 -- 180 |
35 -- 41 |
-36.5778 kcal/mol |
10.9694 kcal/mol |
9.45905 kcal/mol |
166 214@LB@ | |@LB@5'-GGA...CAAUU U GGU GU AAAGUA U A AAAAU...AUU-3'@LB@ GGUUUC UCUCUGAAU GGGA AUGA UGGC GA GCGC@LB@ ::|||| ||||||||| |||| |||| |::| :| ||||@LB@ UUAAAG AGAGACUUA CCCU UACU AUUG UU CGCG@LB@3'-UUU...CGGUU U AGU AC U A CAGAAAG-5'@LB@ | |@LB@ 49 7@LB@@LB@@LB@Energy -16.15 kcal/mol@LB@Hybridization Energy -36.5778 kcal/mol@LB@Unfolding Energy - mRNA 10.9694 kcal/mol@LB@Unfolding Energy - sRNA 9.45905 kcal/mol@LB@@LB@Position - mRNA 167 -- 213@LB@Position - sRNA 8 -- 48@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 35 -- 41@LB@ |
70 |
0.006501 |
0.3087 |
b3301 |
rplO |
-9.96 |
0.122936 |
194 -- 206 |
8 -- 20 |
50S ribosomal subunit protein L15 |
|
_____________193___________207\n_____________|_____________|\n5'-UUC...GAGGA____G________UUAAA...GUG-3'\n______________GUAA_AGAUGCGU\n______________:|||_|:|||||:\n______________UAUU_UUUACGCG\n3'-UUU...ACUAC____G________CAGAAAG-5'\n_____________|_____________|\n_____________21____________7\n |
200 -- 206 |
8 -- 14 |
-13.6668 kcal/mol |
2.47062 kcal/mol |
1.23367 kcal/mol |
193 207@LB@ | |@LB@5'-UUC...GAGGA G UUAAA...GUG-3'@LB@ GUAA AGAUGCGU@LB@ :||| |:|||||:@LB@ UAUU UUUACGCG@LB@3'-UUU...ACUAC G CAGAAAG-5'@LB@ | |@LB@ 21 7@LB@@LB@@LB@Energy -9.96 kcal/mol@LB@Hybridization Energy -13.6668 kcal/mol@LB@Unfolding Energy - mRNA 2.47062 kcal/mol@LB@Unfolding Energy - sRNA 1.23367 kcal/mol@LB@@LB@Position - mRNA 194 -- 206@LB@Position - sRNA 8 -- 20@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 8 -- 14@LB@ |
82 |
0.007621 |
0.3104 |
b3388 |
damX |
-7.48 |
0.304490 |
3 -- 13 |
8 -- 18 |
cell division protein that binds to the septal ring |
|
_____________2___________14\n_____________|___________|\n_________5'-GG__G________UUAAU...AAC-3'\n______________GA_AGAUGCGC\n______________:|_|:||||||\n______________UU_UUUACGCG\n3'-UUU...UACUA__G________CAGAAAG-5'\n_____________|___________|\n_____________19__________7\n |
7 -- 13 |
8 -- 14 |
-13.7317 kcal/mol |
5.04786 kcal/mol |
1.20363 kcal/mol |
2 14@LB@ | |@LB@ 5'-GG G UUAAU...AAC-3'@LB@ GA AGAUGCGC@LB@ :| |:||||||@LB@ UU UUUACGCG@LB@3'-UUU...UACUA G CAGAAAG-5'@LB@ | |@LB@ 19 7@LB@@LB@@LB@Energy -7.48 kcal/mol@LB@Hybridization Energy -13.7317 kcal/mol@LB@Unfolding Energy - mRNA 5.04786 kcal/mol@LB@Unfolding Energy - sRNA 1.20363 kcal/mol@LB@@LB@Position - mRNA 3 -- 13@LB@Position - sRNA 8 -- 18@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 8 -- 14@LB@ |
86 |
0.008729 |
0.3104 |
b4213 |
cpdB |
-12.03 |
0.054140 |
68 -- 81 |
8 -- 21 |
2':3'-cyclic-nucleotide 2'-phosphodiesterase |
|
_____________67_____________82\n_____________|______________|\n5'-UGA...CUAUC_U____________CAACU...AUA-3'\n______________G_UAAUGAAUGCGC\n______________|_|||::|||||||\n______________C_AUUGUUUACGCG\n3'-UUU...UACUA_U____________CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
75 -- 81 |
8 -- 14 |
-15.4826 kcal/mol |
2.2212 kcal/mol |
1.23638 kcal/mol |
67 82@LB@ | |@LB@5'-UGA...CUAUC U CAACU...AUA-3'@LB@ G UAAUGAAUGCGC@LB@ | |||::|||||||@LB@ C AUUGUUUACGCG@LB@3'-UUU...UACUA U CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -12.03 kcal/mol@LB@Hybridization Energy -15.4826 kcal/mol@LB@Unfolding Energy - mRNA 2.2212 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 68 -- 81@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 8 -- 14@LB@ |
99 |
0.009943 |
0.3104 |
b3405 |
ompR |
-10.46 |
0.101388 |
231 -- 245 |
8 -- 21 |
response regulator in two-component regulatory system with EnvZ |
|
_____________230_____________246\n_____________|_______________|\n5'-AAU...UGGUC________C______CUGCG...GCG-3'\n______________GAUGACGA_AUGCGC\n______________|||:||:|_||||||\n______________CUAUUGUU_UACGCG\n3'-UUU...UACUA_______________CAGAAAG-5'\n_____________|_______________|\n_____________22______________7\n |
232 -- 238 |
14 -- 20 |
-17.2341 kcal/mol |
5.5408 kcal/mol |
1.23638 kcal/mol |
230 246@LB@ | |@LB@5'-AAU...UGGUC C CUGCG...GCG-3'@LB@ GAUGACGA AUGCGC@LB@ |||:||:| ||||||@LB@ CUAUUGUU UACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -17.2341 kcal/mol@LB@Unfolding Energy - mRNA 5.5408 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 231 -- 245@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 14 -- 20@LB@ |
111 |
0.01125 |
0.3104 |
b0102 |
zapD |
-10.07 |
0.117779 |
99 -- 113 |
8 -- 22 |
FtsZ stabilizer |
|
_____________98______________114\n_____________|_______________|\n5'-ACC...GUCAU_________CG____ACCGG...CCA-3'\n______________UGAUAAUAA__GCGC\n______________||||||:||__||||\n______________ACUAUUGUU__CGCG\n3'-UUU...CUACU_________UA____CAGAAAG-5'\n_____________|_______________|\n_____________23______________7\n |
101 -- 107 |
14 -- 20 |
-15.8633 kcal/mol |
4.55182 kcal/mol |
1.23838 kcal/mol |
98 114@LB@ | |@LB@5'-ACC...GUCAU CG ACCGG...CCA-3'@LB@ UGAUAAUAA GCGC@LB@ ||||||:|| ||||@LB@ ACUAUUGUU CGCG@LB@3'-UUU...CUACU UA CAGAAAG-5'@LB@ | |@LB@ 23 7@LB@@LB@@LB@Energy -10.07 kcal/mol@LB@Hybridization Energy -15.8633 kcal/mol@LB@Unfolding Energy - mRNA 4.55182 kcal/mol@LB@Unfolding Energy - sRNA 1.23838 kcal/mol@LB@@LB@Position - mRNA 99 -- 113@LB@Position - sRNA 8 -- 22@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 14 -- 20@LB@ |
116 |
0.01184 |
0.3104 |
b1218 |
chaC |
-12.45 |
0.045440 |
10 -- 29 |
8 -- 30 |
cation transport regulator |
|
_____________9_______________________30\n_____________|_______________________|\n5'-AUA...GCCAA_______________________AUAAA...CGC-3'\n______________AGGG__GAUGAUGAUAAAUG_GC\n______________||||__||||||:|:|||||_||\n______________UCCC__CUACUAUUGUUUAC_CG\n3'-UUU...UUAAG____UA______________G__CAGAAAG-5'\n_____________|_______________________|\n_____________31______________________7\n |
21 -- 27 |
11 -- 17 |
-25.0616 kcal/mol |
5.19055 kcal/mol |
7.41684 kcal/mol |
9 30@LB@ | |@LB@5'-AUA...GCCAA AUAAA...CGC-3'@LB@ AGGG GAUGAUGAUAAAUG GC@LB@ |||| ||||||:|:||||| ||@LB@ UCCC CUACUAUUGUUUAC CG@LB@3'-UUU...UUAAG UA G CAGAAAG-5'@LB@ | |@LB@ 31 7@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -25.0616 kcal/mol@LB@Unfolding Energy - mRNA 5.19055 kcal/mol@LB@Unfolding Energy - sRNA 7.41684 kcal/mol@LB@@LB@Position - mRNA 10 -- 29@LB@Position - sRNA 8 -- 30@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 11 -- 17@LB@ |