| 161 |
0.01501 |
0.3104 |
b1709 |
btuD |
-8.32 |
0.227073 |
129 -- 137 |
1 -- 9 |
vitamin B12 ABC transporter ATPase |
|
_____________128_______138\n_____________|_________|\n5'-GCA...AUCCA_________CCCGG...GGC-3'\n______________GCGUUUUUC\n______________||||:||||\n______________CGCAGAAAG\n3'-UUU...UUACG_________-5'\n_____________|________|\n_____________10_______1\n |
131 -- 137 |
1 -- 7 |
-11.771 kcal/mol |
2.3321 kcal/mol |
1.11751 kcal/mol |
128 138@LB@ | |@LB@5'-GCA...AUCCA CCCGG...GGC-3'@LB@ GCGUUUUUC@LB@ ||||:||||@LB@ CGCAGAAAG@LB@3'-UUU...UUACG -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -8.32 kcal/mol@LB@Hybridization Energy -11.771 kcal/mol@LB@Unfolding Energy - mRNA 2.3321 kcal/mol@LB@Unfolding Energy - sRNA 1.11751 kcal/mol@LB@@LB@Position - mRNA 129 -- 137@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 131 -- 137@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 172 |
0.01719 |
0.3104 |
b0678 |
nagB |
-13.42 |
0.030481 |
5 -- 26 |
1 -- 17 |
glucosamine-6-phosphate deaminase |
|
_____________4______________________27\n_____________|______________________|\n_______5'-UAUC______UAAAC___________GUGAG...GUC-3'\n______________GCAAAU_____GCGUGUCUUUU\n______________:|||||_____|||:||||||:\n______________UGUUUA_____CGCGCAGAAAG\n3'-UUU...ACUAU______________________-5'\n_____________|_____________________|\n_____________18____________________1\n |
20 -- 26 |
1 -- 7 |
-18.2092 kcal/mol |
3.54695 kcal/mol |
1.23994 kcal/mol |
4 27@LB@ | |@LB@ 5'-UAUC UAAAC GUGAG...GUC-3'@LB@ GCAAAU GCGUGUCUUUU@LB@ :||||| |||:||||||:@LB@ UGUUUA CGCGCAGAAAG@LB@3'-UUU...ACUAU -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -13.42 kcal/mol@LB@Hybridization Energy -18.2092 kcal/mol@LB@Unfolding Energy - mRNA 3.54695 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 5 -- 26@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 177 |
0.01751 |
0.3104 |
b2900 |
yqfB |
-9.18 |
0.165418 |
52 -- 70 |
1 -- 17 |
UPF0267 family protein |
|
_____________51__________________71\n_____________|___________________|\n5'-UUC...ACGUC________U__GCC_____CCGCC...UCA-3'\n______________ACAAAUGC_CG___CUUUU\n______________||||||||_||___||||:\n______________UGUUUACG_GC___GAAAG\n3'-UUU...ACUAU________C__A_______-5'\n_____________|__________________|\n_____________18_________________1\n |
53 -- 59 |
10 -- 16 |
-13.5578 kcal/mol |
3.13415 kcal/mol |
1.23994 kcal/mol |
51 71@LB@ | |@LB@5'-UUC...ACGUC U GCC CCGCC...UCA-3'@LB@ ACAAAUGC CG CUUUU@LB@ |||||||| || ||||:@LB@ UGUUUACG GC GAAAG@LB@3'-UUU...ACUAU C A -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -13.5578 kcal/mol@LB@Unfolding Energy - mRNA 3.13415 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 52 -- 70@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 181 |
0.01793 |
0.3104 |
b1594 |
mlc |
-11.10 |
0.078496 |
11 -- 37 |
1 -- 18 |
glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
|
_____________10__________________________38\n_____________|___________________________|\n5'-AAA...UCAUG______GUCCGGC_______AA_____GUAUU...GUA-3'\n______________AACAAA_______UGCGCGU__CUUUC\n______________||||||_______|||||||__|||||\n______________UUGUUU_______ACGCGCA__GAAAG\n3'-UUU...UACUA___________________________-5'\n_____________|__________________________|\n_____________19_________________________1\n |
24 -- 30 |
6 -- 12 |
-16.8416 kcal/mol |
4.49753 kcal/mol |
1.24077 kcal/mol |
10 38@LB@ | |@LB@5'-AAA...UCAUG GUCCGGC AA GUAUU...GUA-3'@LB@ AACAAA UGCGCGU CUUUC@LB@ |||||| ||||||| |||||@LB@ UUGUUU ACGCGCA GAAAG@LB@3'-UUU...UACUA -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -11.10 kcal/mol@LB@Hybridization Energy -16.8416 kcal/mol@LB@Unfolding Energy - mRNA 4.49753 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 11 -- 37@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 192 |
0.01895 |
0.3104 |
b3333 |
gspL |
-4.89 |
0.645256 |
110 -- 132 |
1 -- 21 |
general secretory pathway component cryptic |
|
_____________109______________________133\n_____________|________________________|\n5'-GAU...CCAGG____________CAUAUU______AACCG...CGC-3'\n______________GAUGGCAAA_GC______UUUUUC\n______________|||::||||_||______|:||||\n______________CUAUUGUUU_CG______AGAAAG\n3'-UUU...UACUA_________A__CGC_________-5'\n_____________|_______________________|\n_____________22______________________1\n |
110 -- 116 |
15 -- 21 |
-12.6455 kcal/mol |
6.50221 kcal/mol |
1.25763 kcal/mol |
109 133@LB@ | |@LB@5'-GAU...CCAGG CAUAUU AACCG...CGC-3'@LB@ GAUGGCAAA GC UUUUUC@LB@ |||::|||| || |:||||@LB@ CUAUUGUUU CG AGAAAG@LB@3'-UUU...UACUA A CGC -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -4.89 kcal/mol@LB@Hybridization Energy -12.6455 kcal/mol@LB@Unfolding Energy - mRNA 6.50221 kcal/mol@LB@Unfolding Energy - sRNA 1.25763 kcal/mol@LB@@LB@Position - mRNA 110 -- 132@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 198 |
0.0193 |
0.3104 |
b2961 |
mutY |
-10.33 |
0.106403 |
22 -- 38 |
1 -- 15 |
adenine DNA glycosylase |
|
_____________21________________39\n_____________|_________________|\n5'-CGU...CGGUG_____A__U________AUAAA...UAU-3'\n______________AAAUG_CG_CGUUUUUC\n______________|||||_||_|||:||||\n______________UUUAC_GC_GCAGAAAG\n3'-UUU...UAUUG_________________-5'\n_____________|________________|\n_____________16_______________1\n |
32 -- 38 |
1 -- 7 |
-14.8981 kcal/mol |
3.3462 kcal/mol |
1.21803 kcal/mol |
21 39@LB@ | |@LB@5'-CGU...CGGUG A U AUAAA...UAU-3'@LB@ AAAUG CG CGUUUUUC@LB@ ||||| || |||:||||@LB@ UUUAC GC GCAGAAAG@LB@3'-UUU...UAUUG -5'@LB@ | |@LB@ 16 1@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -14.8981 kcal/mol@LB@Unfolding Energy - mRNA 3.3462 kcal/mol@LB@Unfolding Energy - sRNA 1.21803 kcal/mol@LB@@LB@Position - mRNA 22 -- 38@LB@Position - sRNA 1 -- 15@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 2 |
9.051e-06 |
0.01532 |
b2745 |
truD |
-15.77 |
0.011349 |
54 -- 69 |
2 -- 17 |
tRNA(Glu) pseudouridine(13) synthase |
|
_____________53_______________70\n_____________|________________|\n5'-AAC...AUUCC____________G___AUUGC...UGG-3'\n______________ACAAAUGCGCGU_UUU\n______________||||||||||||_|||\n______________UGUUUACGCGCA_AAA\n3'-UUU...ACUAU____________G___G-5'\n_____________|________________|\n_____________18_______________1\n |
59 -- 65 |
6 -- 12 |
-22.0257 kcal/mol |
5.01487 kcal/mol |
1.23894 kcal/mol |
53 70@LB@ | |@LB@5'-AAC...AUUCC G AUUGC...UGG-3'@LB@ ACAAAUGCGCGU UUU@LB@ |||||||||||| |||@LB@ UGUUUACGCGCA AAA@LB@3'-UUU...ACUAU G G-5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -15.77 kcal/mol@LB@Hybridization Energy -22.0257 kcal/mol@LB@Unfolding Energy - mRNA 5.01487 kcal/mol@LB@Unfolding Energy - sRNA 1.23894 kcal/mol@LB@@LB@Position - mRNA 54 -- 69@LB@Position - sRNA 2 -- 17@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 14 |
0.0004057 |
0.09812 |
b0886 |
cydC |
-15.95 |
0.010534 |
194 -- 211 |
2 -- 21 |
glutathione/cysteine ABC transporter export permease/ATPase |
|
_____________193__________________212\n_____________|____________________|\n5'-GCG...GAGGA___U________________GCUAC...UCG-3'\n______________GAU__UAAAUGCGCG_CUUU\n______________|||__:|||||||||_||||\n______________CUA__GUUUACGCGC_GAAA\n3'-UUU...UACUA___UU__________A____G-5'\n_____________|____________________|\n_____________22___________________1\n |
201 -- 207 |
7 -- 13 |
-19.6155 kcal/mol |
2.41081 kcal/mol |
1.25756 kcal/mol |
193 212@LB@ | |@LB@5'-GCG...GAGGA U GCUAC...UCG-3'@LB@ GAU UAAAUGCGCG CUUU@LB@ ||| :||||||||| ||||@LB@ CUA GUUUACGCGC GAAA@LB@3'-UUU...UACUA UU A G-5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -15.95 kcal/mol@LB@Hybridization Energy -19.6155 kcal/mol@LB@Unfolding Energy - mRNA 2.41081 kcal/mol@LB@Unfolding Energy - sRNA 1.25756 kcal/mol@LB@@LB@Position - mRNA 194 -- 211@LB@Position - sRNA 2 -- 21@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 26 |
0.001545 |
0.1943 |
b1678 |
ldtE |
-10.42 |
0.102915 |
208 -- 217 |
2 -- 11 |
murein L D-transpeptidase |
|
_____________207________218\n_____________|__________|\n5'-UCU...GAAAC__________GCUUA...GCC-3'\n______________GCGCGUCUUU\n______________||||||||||\n______________CGCGCAGAAA\n3'-UUU...GUUUA__________G-5'\n_____________|__________|\n_____________12_________1\n |
211 -- 217 |
2 -- 8 |
-16.5846 kcal/mol |
4.99595 kcal/mol |
1.16977 kcal/mol |
207 218@LB@ | |@LB@5'-UCU...GAAAC GCUUA...GCC-3'@LB@ GCGCGUCUUU@LB@ ||||||||||@LB@ CGCGCAGAAA@LB@3'-UUU...GUUUA G-5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -10.42 kcal/mol@LB@Hybridization Energy -16.5846 kcal/mol@LB@Unfolding Energy - mRNA 4.99595 kcal/mol@LB@Unfolding Energy - sRNA 1.16977 kcal/mol@LB@@LB@Position - mRNA 208 -- 217@LB@Position - sRNA 2 -- 11@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 40 |
0.002726 |
0.2279 |
b1799 |
dmlR |
-13.48 |
0.029707 |
223 -- 239 |
2 -- 20 |
transcriptional activator of dmlA |
b3060 |
_____________222_________________240\n_____________|___________________|\n5'-CGC...GCUGA_____U_____________AUGCU...CGG-3'\n______________AUGAU___UGCGCGUCUUU\n______________||:|:___|||||||||||\n______________UAUUG___ACGCGCAGAAA\n3'-UUU...ACUAC_____UUU___________G-5'\n_____________|___________________|\n_____________21__________________1\n |
233 -- 239 |
2 -- 8 |
-19.9945 kcal/mol |
5.2543 kcal/mol |
1.25604 kcal/mol |
222 240@LB@ | |@LB@5'-CGC...GCUGA U AUGCU...CGG-3'@LB@ AUGAU UGCGCGUCUUU@LB@ ||:|: |||||||||||@LB@ UAUUG ACGCGCAGAAA@LB@3'-UUU...ACUAC UUU G-5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -13.48 kcal/mol@LB@Hybridization Energy -19.9945 kcal/mol@LB@Unfolding Energy - mRNA 5.2543 kcal/mol@LB@Unfolding Energy - sRNA 1.25604 kcal/mol@LB@@LB@Position - mRNA 223 -- 239@LB@Position - sRNA 2 -- 20@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 2 -- 8@LB@ |
