9 |
0.000195 |
0.07335 |
b1830 |
prc |
-15.09 |
0.015143 |
131 -- 161 |
7 -- 38 |
carboxy-terminal protease for penicillin-binding protein 3 |
|
_____________130______________________________162\n_____________|________________________________|\n5'-CGA...UCCAG___________U___UCUU____U________CAGAA...CGG-3'\n______________CUGAAUUCGGG_AUG____UGAU__GUGCGCG\n______________||||||||:||_|||____|:|:__:||||||\n______________GACUUAAGUCC_UAC____AUUG__UACGCGC\n3'-UUU...GUAGA___________C___UACU____UU_______AGAAAG-5'\n_____________|________________________________|\n_____________39_______________________________6\n |
155 -- 161 |
7 -- 13 |
-31.7028 kcal/mol |
7.25259 kcal/mol |
9.35859 kcal/mol |
130 162@LB@ | |@LB@5'-CGA...UCCAG U UCUU U CAGAA...CGG-3'@LB@ CUGAAUUCGGG AUG UGAU GUGCGCG@LB@ ||||||||:|| ||| |:|: :||||||@LB@ GACUUAAGUCC UAC AUUG UACGCGC@LB@3'-UUU...GUAGA C UACU UU AGAAAG-5'@LB@ | |@LB@ 39 6@LB@@LB@@LB@Energy -15.09 kcal/mol@LB@Hybridization Energy -31.7028 kcal/mol@LB@Unfolding Energy - mRNA 7.25259 kcal/mol@LB@Unfolding Energy - sRNA 9.35859 kcal/mol@LB@@LB@Position - mRNA 131 -- 161@LB@Position - sRNA 7 -- 38@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 7 -- 13@LB@ |
13 |
0.0003435 |
0.08948 |
b2551 |
glyA |
-14.51 |
0.019315 |
147 -- 213 |
7 -- 69 |
serine hydroxymethyltransferase |
|
_____________146____________________________________________________________________214\n_____________|______________________________________________________________________|\n5'-CAA...CCAAC___A______UAUAAA_______A________GUUAG___________A____CG____U__________AAAUG...UCG-3'\n______________AGG_CCGC_C______GGCCAAA_AUUUUAUU_____CUGAG_UCAGG_GAUG__GAUG_UAAA_GCGUG\n______________|||_||:|_|______|||||||_||||:||:_____||||:_|||||_||||__|||:_:|||_|||:|\n______________UCC_GGUG_G______CCGGUUU_UAAAGUAG_____GACUU_AGUCC_CUAC__CUAU_GUUU_CGCGC\n________3'-UUU________A_CACUCA________________A_________A__________UA____U____A_____AGAAAG-5'\n_____________|______________________________________________________________________|\n_____________70_____________________________________________________________________6\n |
162 -- 168 |
48 -- 54 |
-52.4461 kcal/mol |
16.168 kcal/mol |
21.7638 kcal/mol |
146 214@LB@ | |@LB@5'-CAA...CCAAC A UAUAAA A GUUAG A CG U AAAUG...UCG-3'@LB@ AGG CCGC C GGCCAAA AUUUUAUU CUGAG UCAGG GAUG GAUG UAAA GCGUG@LB@ ||| ||:| | ||||||| ||||:||: ||||: ||||| |||| |||: :||| |||:|@LB@ UCC GGUG G CCGGUUU UAAAGUAG GACUU AGUCC CUAC CUAU GUUU CGCGC@LB@ 3'-UUU A CACUCA A A UA U A AGAAAG-5'@LB@ | |@LB@ 70 6@LB@@LB@@LB@Energy -14.51 kcal/mol@LB@Hybridization Energy -52.4461 kcal/mol@LB@Unfolding Energy - mRNA 16.168 kcal/mol@LB@Unfolding Energy - sRNA 21.7638 kcal/mol@LB@@LB@Position - mRNA 147 -- 213@LB@Position - sRNA 7 -- 69@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 48 -- 54@LB@ |
28 |
0.001743 |
0.2094 |
b2308 |
hisQ |
-15.00 |
0.015715 |
1 -- 16 |
7 -- 21 |
histidine ABC transporter permease |
|
______________1_______________17\n______________|_______________|\n___________5'-_________C______AAGCA...UUG-3'\n______________GAUAACGAA_UGCGCG\n______________||||||:||_||||||\n______________CUAUUGUUU_ACGCGC\n3'-UUU...UACUA________________AGAAAG-5'\n_____________|________________|\n_____________22_______________6\n |
3 -- 9 |
13 -- 19 |
-21.0778 kcal/mol |
4.83206 kcal/mol |
1.24179 kcal/mol |
1 17@LB@ | |@LB@ 5'- C AAGCA...UUG-3'@LB@ GAUAACGAA UGCGCG@LB@ ||||||:|| ||||||@LB@ CUAUUGUUU ACGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -15.00 kcal/mol@LB@Hybridization Energy -21.0778 kcal/mol@LB@Unfolding Energy - mRNA 4.83206 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 1 -- 16@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 13 -- 19@LB@ |
29 |
0.001844 |
0.2094 |
b2047 |
wcaJ |
-13.26 |
0.032615 |
200 -- 222 |
7 -- 21 |
colanic biosynthesis UDP-glucose lipid carrier transferase |
|
_____________199_____________________223\n_____________|_______________________|\n5'-GCA...ACAAC__________CUAAAAAA_____AGCGA...UAU-3'\n______________GAUGACAAAU________GCGCG\n______________|||:||||||________|||||\n______________CUAUUGUUUA________CGCGC\n3'-UUU...UACUA_______________________AGAAAG-5'\n_____________|_______________________|\n_____________22______________________6\n |
203 -- 209 |
12 -- 18 |
-17.5174 kcal/mol |
3.01646 kcal/mol |
1.24179 kcal/mol |
199 223@LB@ | |@LB@5'-GCA...ACAAC CUAAAAAA AGCGA...UAU-3'@LB@ GAUGACAAAU GCGCG@LB@ |||:|||||| |||||@LB@ CUAUUGUUUA CGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -13.26 kcal/mol@LB@Hybridization Energy -17.5174 kcal/mol@LB@Unfolding Energy - mRNA 3.01646 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 200 -- 222@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 12 -- 18@LB@ |
31 |
0.001974 |
0.2094 |
b1080 |
flgI |
-10.59 |
0.096403 |
87 -- 101 |
7 -- 21 |
putative flagellar basal body protein |
|
_____________86______________102\n_____________|_______________|\n5'-AUU...ACUCA_______________CAUUG...AAA-3'\n______________GGUGGCGGAUGCGCG\n______________|:|::|::|||||||\n______________CUAUUGUUUACGCGC\n3'-UUU...UACUA_______________AGAAAG-5'\n_____________|_______________|\n_____________22______________6\n |
95 -- 101 |
7 -- 13 |
-22.6939 kcal/mol |
10.8668 kcal/mol |
1.24179 kcal/mol |
86 102@LB@ | |@LB@5'-AUU...ACUCA CAUUG...AAA-3'@LB@ GGUGGCGGAUGCGCG@LB@ |:|::|::|||||||@LB@ CUAUUGUUUACGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -22.6939 kcal/mol@LB@Unfolding Energy - mRNA 10.8668 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 87 -- 101@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 7 -- 13@LB@ |
32 |
0.001981 |
0.2094 |
b3110 |
yhaO |
-10.61 |
0.095420 |
268 -- 283 |
7 -- 23 |
putative transporter |
|
_____________267_______________284\n_____________|_________________|\n5'-AAU...AAUGA____G____________AGAAG...UCG-3'\n______________GUGA_AGCGAGUG_GCG\n______________:|||_|:|:|:||_|||\n______________UACU_UUGUUUAC_CGC\n3'-UUU...CCUAC____A________G___AGAAAG-5'\n_____________|_________________|\n_____________24________________6\n |
274 -- 280 |
11 -- 17 |
-15.5882 kcal/mol |
2.45682 kcal/mol |
2.52012 kcal/mol |
267 284@LB@ | |@LB@5'-AAU...AAUGA G AGAAG...UCG-3'@LB@ GUGA AGCGAGUG GCG@LB@ :||| |:|:|:|| |||@LB@ UACU UUGUUUAC CGC@LB@3'-UUU...CCUAC A G AGAAAG-5'@LB@ | |@LB@ 24 6@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -15.5882 kcal/mol@LB@Unfolding Energy - mRNA 2.45682 kcal/mol@LB@Unfolding Energy - sRNA 2.52012 kcal/mol@LB@@LB@Position - mRNA 268 -- 283@LB@Position - sRNA 7 -- 23@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 11 -- 17@LB@ |
36 |
0.002407 |
0.2206 |
b2550 |
yphH |
-13.17 |
0.033778 |
238 -- 251 |
7 -- 20 |
putative DNA-binding transcriptional regulator |
|
_____________237____________252\n_____________|______________|\n5'-AGG...CCACC______________AUUCU...UGG-3'\n______________AUAACAAAUGCGUG\n______________||||||||||||:|\n______________UAUUGUUUACGCGC\n3'-UUU...ACUAC______________AGAAAG-5'\n_____________|______________|\n_____________21_____________6\n |
245 -- 251 |
7 -- 13 |
-19.0929 kcal/mol |
4.67933 kcal/mol |
1.23906 kcal/mol |
237 252@LB@ | |@LB@5'-AGG...CCACC AUUCU...UGG-3'@LB@ AUAACAAAUGCGUG@LB@ ||||||||||||:|@LB@ UAUUGUUUACGCGC@LB@3'-UUU...ACUAC AGAAAG-5'@LB@ | |@LB@ 21 6@LB@@LB@@LB@Energy -13.17 kcal/mol@LB@Hybridization Energy -19.0929 kcal/mol@LB@Unfolding Energy - mRNA 4.67933 kcal/mol@LB@Unfolding Energy - sRNA 1.23906 kcal/mol@LB@@LB@Position - mRNA 238 -- 251@LB@Position - sRNA 7 -- 20@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 7 -- 13@LB@ |
43 |
0.003009 |
0.2325 |
b3429 |
glgA |
-8.59 |
0.206361 |
152 -- 163 |
7 -- 22 |
glycogen synthase |
|
_____________151______________164\n_____________|________________|\n5'-GUA...CGUGC________________AAAUG...ACG-3'\n______________UGGUAAC____GCGCG\n______________||:||||____|||||\n______________ACUAUUG____CGCGC\n3'-UUU...CUACU_______UUUA_____AGAAAG-5'\n_____________|________________|\n_____________23_______________6\n |
152 -- 158 |
16 -- 22 |
-13.429 kcal/mol |
3.59934 kcal/mol |
1.24379 kcal/mol |
151 164@LB@ | |@LB@5'-GUA...CGUGC AAAUG...ACG-3'@LB@ UGGUAAC GCGCG@LB@ ||:|||| |||||@LB@ ACUAUUG CGCGC@LB@3'-UUU...CUACU UUUA AGAAAG-5'@LB@ | |@LB@ 23 6@LB@@LB@@LB@Energy -8.59 kcal/mol@LB@Hybridization Energy -13.429 kcal/mol@LB@Unfolding Energy - mRNA 3.59934 kcal/mol@LB@Unfolding Energy - sRNA 1.24379 kcal/mol@LB@@LB@Position - mRNA 152 -- 163@LB@Position - sRNA 7 -- 22@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 16 -- 22@LB@ |
46 |
0.003408 |
0.2484 |
b2518 |
ndk |
-12.77 |
0.039848 |
1 -- 16 |
7 -- 21 |
multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase |
|
______________1_______________17\n______________|_______________|\n___________5'-___________A____GGGCA...AAA-3'\n______________GGUGAUGGAUG_CGUG\n______________|:|:|:::|||_||:|\n______________CUAUUGUUUAC_GCGC\n3'-UUU...UACUA________________AGAAAG-5'\n_____________|________________|\n_____________22_______________6\n |
5 -- 11 |
11 -- 17 |
-16.3595 kcal/mol |
2.34366 kcal/mol |
1.24179 kcal/mol |
1 17@LB@ | |@LB@ 5'- A GGGCA...AAA-3'@LB@ GGUGAUGGAUG CGUG@LB@ |:|:|:::||| ||:|@LB@ CUAUUGUUUAC GCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -12.77 kcal/mol@LB@Hybridization Energy -16.3595 kcal/mol@LB@Unfolding Energy - mRNA 2.34366 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 1 -- 16@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 11 -- 17@LB@ |
53 |
0.004896 |
0.3024 |
b3790 |
wecD |
-9.15 |
0.167607 |
125 -- 139 |
7 -- 21 |
TDP-fucosamine acetyltransferase |
|
_____________124_____________140\n_____________|_______________|\n5'-CUG...GGCUC_________G_____AAGCG...UGA-3'\n______________GAUGACGAG_GUGUG\n______________|||:||:|:_|:|:|\n______________CUAUUGUUU_CGCGC\n3'-UUU...UACUA_________A_____AGAAAG-5'\n_____________|_______________|\n_____________22______________6\n |
126 -- 132 |
14 -- 20 |
-15.9636 kcal/mol |
5.57309 kcal/mol |
1.24179 kcal/mol |
124 140@LB@ | |@LB@5'-CUG...GGCUC G AAGCG...UGA-3'@LB@ GAUGACGAG GUGUG@LB@ |||:||:|: |:|:|@LB@ CUAUUGUUU CGCGC@LB@3'-UUU...UACUA A AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -9.15 kcal/mol@LB@Hybridization Energy -15.9636 kcal/mol@LB@Unfolding Energy - mRNA 5.57309 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 125 -- 139@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 14 -- 20@LB@ |