112 |
0.01125 |
0.3104 |
b2515 |
ispG |
-10.24 |
0.110168 |
132 -- 140 |
4 -- 12 |
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|
_____________131_______141\n_____________|_________|\n5'-CGU...CAGGU_________GACCC...UGA-3'\n______________UGCGCGUCU\n______________|||||||||\n______________ACGCGCAGA\n3'-UUU...UGUUU_________AAG-5'\n_____________|_________|\n_____________13________3\n |
134 -- 140 |
4 -- 10 |
-16.4542 kcal/mol |
5.04928 kcal/mol |
1.16019 kcal/mol |
131 141@LB@ | |@LB@5'-CGU...CAGGU GACCC...UGA-3'@LB@ UGCGCGUCU@LB@ |||||||||@LB@ ACGCGCAGA@LB@3'-UUU...UGUUU AAG-5'@LB@ | |@LB@ 13 3@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -16.4542 kcal/mol@LB@Unfolding Energy - mRNA 5.04928 kcal/mol@LB@Unfolding Energy - sRNA 1.16019 kcal/mol@LB@@LB@Position - mRNA 132 -- 140@LB@Position - sRNA 4 -- 12@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 4 -- 10@LB@ |
101 |
0.01005 |
0.3104 |
b3288 |
fmt |
-10.27 |
0.109217 |
249 -- 255 |
5 -- 11 |
10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase |
|
_____________248_____256\n_____________|_______|\n5'-AUU...UUGCA_______AUCUC...UGU-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
249 -- 255 |
5 -- 11 |
-14.5658 kcal/mol |
3.18739 kcal/mol |
1.11145 kcal/mol |
248 256@LB@ | |@LB@5'-AUU...UUGCA AUCUC...UGU-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -14.5658 kcal/mol@LB@Unfolding Energy - mRNA 3.18739 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 249 -- 255@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 5 -- 11@LB@ |
169 |
0.01667 |
0.3104 |
b3575 |
yiaK |
-9.90 |
0.125874 |
198 -- 219 |
8 -- 29 |
2 3-diketo-L-gulonate reductase NADH-dependent |
|
_____________197____________________220\n_____________|______________________|\n5'-UUU...AGCCU_______AA______UU__A__AGUUA...UCG-3'\n______________GGGAUGA__GUGACA__UG_GC\n______________|||||||__:|:|||__||_||\n______________CCCUACU__UAUUGU__AC_CG\n3'-UUU...UAAGU_______AC______UU__G__CAGAAAG-5'\n_____________|______________________|\n_____________30_____________________7\n |
198 -- 204 |
23 -- 29 |
-23.0827 kcal/mol |
5.7681 kcal/mol |
7.41331 kcal/mol |
197 220@LB@ | |@LB@5'-UUU...AGCCU AA UU A AGUUA...UCG-3'@LB@ GGGAUGA GUGACA UG GC@LB@ ||||||| :|:||| || ||@LB@ CCCUACU UAUUGU AC CG@LB@3'-UUU...UAAGU AC UU G CAGAAAG-5'@LB@ | |@LB@ 30 7@LB@@LB@@LB@Energy -9.90 kcal/mol@LB@Hybridization Energy -23.0827 kcal/mol@LB@Unfolding Energy - mRNA 5.7681 kcal/mol@LB@Unfolding Energy - sRNA 7.41331 kcal/mol@LB@@LB@Position - mRNA 198 -- 219@LB@Position - sRNA 8 -- 29@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 23 -- 29@LB@ |
86 |
0.008729 |
0.3104 |
b4213 |
cpdB |
-12.03 |
0.054140 |
68 -- 81 |
8 -- 21 |
2':3'-cyclic-nucleotide 2'-phosphodiesterase |
|
_____________67_____________82\n_____________|______________|\n5'-UGA...CUAUC_U____________CAACU...AUA-3'\n______________G_UAAUGAAUGCGC\n______________|_|||::|||||||\n______________C_AUUGUUUACGCG\n3'-UUU...UACUA_U____________CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
75 -- 81 |
8 -- 14 |
-15.4826 kcal/mol |
2.2212 kcal/mol |
1.23638 kcal/mol |
67 82@LB@ | |@LB@5'-UGA...CUAUC U CAACU...AUA-3'@LB@ G UAAUGAAUGCGC@LB@ | |||::|||||||@LB@ C AUUGUUUACGCG@LB@3'-UUU...UACUA U CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -12.03 kcal/mol@LB@Hybridization Energy -15.4826 kcal/mol@LB@Unfolding Energy - mRNA 2.2212 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 68 -- 81@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 8 -- 14@LB@ |
10 |
0.0002413 |
0.08171 |
b2594 |
rluD |
-15.70 |
0.011720 |
48 -- 64 |
5 -- 21 |
23S rRNA pseudouridine(1911 1915 1917) synthase |
|
_____________47________________65\n_____________|_________________|\n5'-CCC...CACCA____UUUC_________AUGAC...GUU-3'\n______________GAUA____AUGCGCGUC\n______________||||____|||||||||\n______________CUAU____UACGCGCAG\n3'-UUU...UACUA____UGUU_________AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
58 -- 64 |
5 -- 11 |
-19.7285 kcal/mol |
2.7828 kcal/mol |
1.24955 kcal/mol |
47 65@LB@ | |@LB@5'-CCC...CACCA UUUC AUGAC...GUU-3'@LB@ GAUA AUGCGCGUC@LB@ |||| |||||||||@LB@ CUAU UACGCGCAG@LB@3'-UUU...UACUA UGUU AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -15.70 kcal/mol@LB@Hybridization Energy -19.7285 kcal/mol@LB@Unfolding Energy - mRNA 2.7828 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 48 -- 64@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 5 -- 11@LB@ |
144 |
0.01383 |
0.3104 |
b1135 |
rluE |
-11.03 |
0.080673 |
174 -- 189 |
5 -- 20 |
23S rRNA pseudouridine(2457) synthase |
|
_____________173______________190\n_____________|________________|\n5'-UGU...CCGUC____A___________AUUAG...AAC-3'\n______________AUGA_AGAUGCGCGUU\n______________||:|_|:||||||||:\n______________UAUU_UUUACGCGCAG\n3'-UUU...ACUAC____G___________AAAG-5'\n_____________|________________|\n_____________21_______________4\n |
183 -- 189 |
5 -- 11 |
-17.9797 kcal/mol |
5.69694 kcal/mol |
1.24804 kcal/mol |
173 190@LB@ | |@LB@5'-UGU...CCGUC A AUUAG...AAC-3'@LB@ AUGA AGAUGCGCGUU@LB@ ||:| |:||||||||:@LB@ UAUU UUUACGCGCAG@LB@3'-UUU...ACUAC G AAAG-5'@LB@ | |@LB@ 21 4@LB@@LB@@LB@Energy -11.03 kcal/mol@LB@Hybridization Energy -17.9797 kcal/mol@LB@Unfolding Energy - mRNA 5.69694 kcal/mol@LB@Unfolding Energy - sRNA 1.24804 kcal/mol@LB@@LB@Position - mRNA 174 -- 189@LB@Position - sRNA 5 -- 20@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 5 -- 11@LB@ |
133 |
0.01287 |
0.3104 |
b3179 |
rlmE |
-8.60 |
0.205247 |
24 -- 43 |
1 -- 17 |
23S rRNA U2552 2'-O-ribose methyltransferase SAM-dependent |
|
_____________23___________________44\n_____________|____________________|\n5'-GCC...CUUGA__________CAGAC_____AGGUG...CCC-3'\n______________GCGGAUGUGC_____CUUUC\n______________:|::|||:||_____|||||\n______________UGUUUACGCG_____GAAAG\n3'-UUU...ACUAU__________CA________-5'\n_____________|___________________|\n_____________18__________________1\n |
27 -- 33 |
8 -- 14 |
-16.3409 kcal/mol |
6.50016 kcal/mol |
1.23994 kcal/mol |
23 44@LB@ | |@LB@5'-GCC...CUUGA CAGAC AGGUG...CCC-3'@LB@ GCGGAUGUGC CUUUC@LB@ :|::|||:|| |||||@LB@ UGUUUACGCG GAAAG@LB@3'-UUU...ACUAU CA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -16.3409 kcal/mol@LB@Unfolding Energy - mRNA 6.50016 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 24 -- 43@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 8 -- 14@LB@ |
76 |
0.007084 |
0.3087 |
b4214 |
cysQ |
-5.34 |
0.578728 |
11 -- 17 |
26 -- 32 |
3'(2') 5'-bisphosphate nucleotidase |
|
_____________10______18\n_____________|_______|\n5'-AAC...AAUCA_______CAUCC...ACA-3'\n______________UCAGGGA\n______________|||||||\n______________AGUCCCU\n3'-UUU...ACUUA_______ACUAC...AAG-5'\n_____________|_______|\n_____________33______25\n |
11 -- 17 |
26 -- 32 |
-11.6237 kcal/mol |
0.931861 kcal/mol |
5.35475 kcal/mol |
10 18@LB@ | |@LB@5'-AAC...AAUCA CAUCC...ACA-3'@LB@ UCAGGGA@LB@ |||||||@LB@ AGUCCCU@LB@3'-UUU...ACUUA ACUAC...AAG-5'@LB@ | |@LB@ 33 25@LB@@LB@@LB@Energy -5.34 kcal/mol@LB@Hybridization Energy -11.6237 kcal/mol@LB@Unfolding Energy - mRNA 0.931861 kcal/mol@LB@Unfolding Energy - sRNA 5.35475 kcal/mol@LB@@LB@Position - mRNA 11 -- 17@LB@Position - sRNA 26 -- 32@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 26 -- 32@LB@ |
151 |
0.01442 |
0.3104 |
b1395 |
paaH |
-15.43 |
0.013105 |
189 -- 216 |
8 -- 31 |
3-hydroxyadipyl-CoA dehydrogenase NAD+-dependent |
|
_____________188__________________________217\n_____________|____________________________|\n5'-GGC...GUUCA______AAUA_C________________AAACU...UGU-3'\n______________CGGGGA____G_AUGAUGAUAAAUGUGC\n______________|:||||____|_|||||:|:|||||:||\n______________GUCCCU____C_UACUAUUGUUUACGCG\n3'-UUU...CUUAA______A_____________________CAGAAAG-5'\n_____________|____________________________|\n_____________32___________________________7\n |
210 -- 216 |
8 -- 14 |
-28.6523 kcal/mol |
5.47369 kcal/mol |
7.74551 kcal/mol |
188 217@LB@ | |@LB@5'-GGC...GUUCA AAUA C AAACU...UGU-3'@LB@ CGGGGA G AUGAUGAUAAAUGUGC@LB@ |:|||| | |||||:|:|||||:||@LB@ GUCCCU C UACUAUUGUUUACGCG@LB@3'-UUU...CUUAA A CAGAAAG-5'@LB@ | |@LB@ 32 7@LB@@LB@@LB@Energy -15.43 kcal/mol@LB@Hybridization Energy -28.6523 kcal/mol@LB@Unfolding Energy - mRNA 5.47369 kcal/mol@LB@Unfolding Energy - sRNA 7.74551 kcal/mol@LB@@LB@Position - mRNA 189 -- 216@LB@Position - sRNA 8 -- 31@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 8 -- 14@LB@ |
39 |
0.002561 |
0.2224 |
b3845 |
fadA |
-14.30 |
0.021162 |
112 -- 126 |
5 -- 20 |
3-ketoacyl-CoA thiolase (thiolase I) |
|
_____________111______________127\n_____________|________________|\n5'-UCC...UCUGC________________AUAAC...AUU-3'\n______________GUAAUAAA_GCGCGUC\n______________:|||:|||_|||||||\n______________UAUUGUUU_CGCGCAG\n3'-UUU...ACUAC________A_______AAAG-5'\n_____________|________________|\n_____________21_______________4\n |
120 -- 126 |
5 -- 11 |
-19.3309 kcal/mol |
3.78617 kcal/mol |
1.24804 kcal/mol |
111 127@LB@ | |@LB@5'-UCC...UCUGC AUAAC...AUU-3'@LB@ GUAAUAAA GCGCGUC@LB@ :|||:||| |||||||@LB@ UAUUGUUU CGCGCAG@LB@3'-UUU...ACUAC A AAAG-5'@LB@ | |@LB@ 21 4@LB@@LB@@LB@Energy -14.30 kcal/mol@LB@Hybridization Energy -19.3309 kcal/mol@LB@Unfolding Energy - mRNA 3.78617 kcal/mol@LB@Unfolding Energy - sRNA 1.24804 kcal/mol@LB@@LB@Position - mRNA 112 -- 126@LB@Position - sRNA 5 -- 20@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 5 -- 11@LB@ |
141 |
0.01345 |
0.3104 |
b3311 |
rpsQ |
-8.13 |
0.242987 |
140 -- 150 |
8 -- 18 |
30S ribosomal subunit protein S17 |
|
_____________139_________151\n_____________|___________|\n5'-GGU...GUUGA___________CGCGA...UCU-3'\n______________AGCAAGUGCGU\n______________|:|||:||||:\n______________UUGUUUACGCG\n3'-UUU...UACUA___________CAGAAAG-5'\n_____________|___________|\n_____________19__________7\n |
144 -- 150 |
8 -- 14 |
-14.6725 kcal/mol |
5.33741 kcal/mol |
1.20363 kcal/mol |
139 151@LB@ | |@LB@5'-GGU...GUUGA CGCGA...UCU-3'@LB@ AGCAAGUGCGU@LB@ |:|||:||||:@LB@ UUGUUUACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 19 7@LB@@LB@@LB@Energy -8.13 kcal/mol@LB@Hybridization Energy -14.6725 kcal/mol@LB@Unfolding Energy - mRNA 5.33741 kcal/mol@LB@Unfolding Energy - sRNA 1.20363 kcal/mol@LB@@LB@Position - mRNA 140 -- 150@LB@Position - sRNA 8 -- 18@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 8 -- 14@LB@ |
70 |
0.006501 |
0.3087 |
b3301 |
rplO |
-9.96 |
0.122936 |
194 -- 206 |
8 -- 20 |
50S ribosomal subunit protein L15 |
|
_____________193___________207\n_____________|_____________|\n5'-UUC...GAGGA____G________UUAAA...GUG-3'\n______________GUAA_AGAUGCGU\n______________:|||_|:|||||:\n______________UAUU_UUUACGCG\n3'-UUU...ACUAC____G________CAGAAAG-5'\n_____________|_____________|\n_____________21____________7\n |
200 -- 206 |
8 -- 14 |
-13.6668 kcal/mol |
2.47062 kcal/mol |
1.23367 kcal/mol |
193 207@LB@ | |@LB@5'-UUC...GAGGA G UUAAA...GUG-3'@LB@ GUAA AGAUGCGU@LB@ :||| |:|||||:@LB@ UAUU UUUACGCG@LB@3'-UUU...ACUAC G CAGAAAG-5'@LB@ | |@LB@ 21 7@LB@@LB@@LB@Energy -9.96 kcal/mol@LB@Hybridization Energy -13.6668 kcal/mol@LB@Unfolding Energy - mRNA 2.47062 kcal/mol@LB@Unfolding Energy - sRNA 1.23367 kcal/mol@LB@@LB@Position - mRNA 194 -- 206@LB@Position - sRNA 8 -- 20@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 8 -- 14@LB@ |
197 |
0.01929 |
0.3104 |
b2185 |
rplY |
-8.58 |
0.206984 |
8 -- 20 |
7 -- 19 |
50S ribosomal subunit protein L25 |
|
_____________7_____________21\n_____________|_____________|\n____5'-CCAGUAC_____________AAAAA...GCA-3'\n______________UGGCAGGUGCGUG\n______________|::||::||||:|\n______________AUUGUUUACGCGC\n3'-UUU...CUACU_____________AGAAAG-5'\n_____________|_____________|\n_____________20____________6\n |
14 -- 20 |
7 -- 13 |
-17.3397 kcal/mol |
7.54262 kcal/mol |
1.21943 kcal/mol |
7 21@LB@ | |@LB@ 5'-CCAGUAC AAAAA...GCA-3'@LB@ UGGCAGGUGCGUG@LB@ |::||::||||:|@LB@ AUUGUUUACGCGC@LB@3'-UUU...CUACU AGAAAG-5'@LB@ | |@LB@ 20 6@LB@@LB@@LB@Energy -8.58 kcal/mol@LB@Hybridization Energy -17.3397 kcal/mol@LB@Unfolding Energy - mRNA 7.54262 kcal/mol@LB@Unfolding Energy - sRNA 1.21943 kcal/mol@LB@@LB@Position - mRNA 8 -- 20@LB@Position - sRNA 7 -- 19@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 7 -- 13@LB@ |
195 |
0.01912 |
0.3104 |
b3910 |
yiiM |
-10.43 |
0.102344 |
196 -- 205 |
9 -- 18 |
6-N-hydroxylaminopurine resistance protein |
|
_____________195________206\n_____________|__________|\n5'-UAA...GAGGG__________AUAUC...UGC-3'\n______________AACAGAUGCG\n______________||||:|||||\n______________UUGUUUACGC\n3'-UUU...UACUA__________GCAGAAAG-5'\n_____________|__________|\n_____________19_________8\n |
199 -- 205 |
9 -- 15 |
-13.3675 kcal/mol |
1.73119 kcal/mol |
1.20319 kcal/mol |
195 206@LB@ | |@LB@5'-UAA...GAGGG AUAUC...UGC-3'@LB@ AACAGAUGCG@LB@ ||||:|||||@LB@ UUGUUUACGC@LB@3'-UUU...UACUA GCAGAAAG-5'@LB@ | |@LB@ 19 8@LB@@LB@@LB@Energy -10.43 kcal/mol@LB@Hybridization Energy -13.3675 kcal/mol@LB@Unfolding Energy - mRNA 1.73119 kcal/mol@LB@Unfolding Energy - sRNA 1.20319 kcal/mol@LB@@LB@Position - mRNA 196 -- 205@LB@Position - sRNA 9 -- 18@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 9 -- 15@LB@ |
109 |
0.01118 |
0.3104 |
b3195 |
mlaF |
-11.81 |
0.058997 |
89 -- 105 |
1 -- 18 |
ABC transporter maintaining OM lipid asymmetry ATP-binding protein |
|
_____________88_________________106\n_____________|__________________|\n5'-UUU...AGUAA___________AG_____GCUAA...GAG-3'\n______________AACAAAUGC_C__CUUUC\n______________|||||||||_|__|||||\n______________UUGUUUACG_G__GAAAG\n3'-UUU...UACUA_________C_CA_____-5'\n_____________|_________________|\n_____________19________________1\n |
91 -- 97 |
10 -- 16 |
-16.9522 kcal/mol |
3.89814 kcal/mol |
1.24077 kcal/mol |
88 106@LB@ | |@LB@5'-UUU...AGUAA AG GCUAA...GAG-3'@LB@ AACAAAUGC C CUUUC@LB@ ||||||||| | |||||@LB@ UUGUUUACG G GAAAG@LB@3'-UUU...UACUA C CA -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -11.81 kcal/mol@LB@Hybridization Energy -16.9522 kcal/mol@LB@Unfolding Energy - mRNA 3.89814 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 89 -- 105@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 10 -- 16@LB@ |
153 |
0.0145 |
0.3104 |
b3866 |
yihI |
-12.31 |
0.048207 |
234 -- 252 |
5 -- 21 |
activator of Der GTPase |
|
_____________233_________________253\n_____________|___________________|\n5'-GAA...GCAAA___CAU_____A_______GAAAA...GUC-3'\n______________GGU___GCAAA_GCGCGUC\n______________|:|___:||||_|||||||\n______________CUA___UGUUU_CGCGCAG\n3'-UUU...UACUA___U_______A_______AAAG-5'\n_____________|___________________|\n_____________22__________________4\n |
246 -- 252 |
5 -- 11 |
-18.8767 kcal/mol |
5.31745 kcal/mol |
1.24955 kcal/mol |
233 253@LB@ | |@LB@5'-GAA...GCAAA CAU A GAAAA...GUC-3'@LB@ GGU GCAAA GCGCGUC@LB@ |:| :|||| |||||||@LB@ CUA UGUUU CGCGCAG@LB@3'-UUU...UACUA U A AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -12.31 kcal/mol@LB@Hybridization Energy -18.8767 kcal/mol@LB@Unfolding Energy - mRNA 5.31745 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 234 -- 252@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 5 -- 11@LB@ |
81 |
0.007385 |
0.3087 |
b0736 |
ybgC |
-11.71 |
0.061637 |
220 -- 237 |
4 -- 21 |
acyl-CoA thioester hydrolase |
|
_____________219________________238\n_____________|__________________|\n5'-UUG...GUUUC______C___U_______ACUAU...AAA-3'\n______________GAUGGC_GGU_CGCGUCU\n______________|||::|_::|_|||||||\n______________CUAUUG_UUA_GCGCAGA\n3'-UUU...UACUA______U___C_______AAG-5'\n_____________|__________________|\n_____________22_________________3\n |
231 -- 237 |
4 -- 10 |
-19.027 kcal/mol |
6.06673 kcal/mol |
1.2552 kcal/mol |
219 238@LB@ | |@LB@5'-UUG...GUUUC C U ACUAU...AAA-3'@LB@ GAUGGC GGU CGCGUCU@LB@ |||::| ::| |||||||@LB@ CUAUUG UUA GCGCAGA@LB@3'-UUU...UACUA U C AAG-5'@LB@ | |@LB@ 22 3@LB@@LB@@LB@Energy -11.71 kcal/mol@LB@Hybridization Energy -19.027 kcal/mol@LB@Unfolding Energy - mRNA 6.06673 kcal/mol@LB@Unfolding Energy - sRNA 1.2552 kcal/mol@LB@@LB@Position - mRNA 220 -- 237@LB@Position - sRNA 4 -- 21@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 4 -- 10@LB@ |
198 |
0.0193 |
0.3104 |
b2961 |
mutY |
-10.33 |
0.106403 |
22 -- 38 |
1 -- 15 |
adenine DNA glycosylase |
|
_____________21________________39\n_____________|_________________|\n5'-CGU...CGGUG_____A__U________AUAAA...UAU-3'\n______________AAAUG_CG_CGUUUUUC\n______________|||||_||_|||:||||\n______________UUUAC_GC_GCAGAAAG\n3'-UUU...UAUUG_________________-5'\n_____________|________________|\n_____________16_______________1\n |
32 -- 38 |
1 -- 7 |
-14.8981 kcal/mol |
3.3462 kcal/mol |
1.21803 kcal/mol |
21 39@LB@ | |@LB@5'-CGU...CGGUG A U AUAAA...UAU-3'@LB@ AAAUG CG CGUUUUUC@LB@ ||||| || |||:||||@LB@ UUUAC GC GCAGAAAG@LB@3'-UUU...UAUUG -5'@LB@ | |@LB@ 16 1@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -14.8981 kcal/mol@LB@Unfolding Energy - mRNA 3.3462 kcal/mol@LB@Unfolding Energy - sRNA 1.21803 kcal/mol@LB@@LB@Position - mRNA 22 -- 38@LB@Position - sRNA 1 -- 15@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 1 -- 7@LB@ |
63 |
0.0059 |
0.3087 |
b3834 |
ubiJ |
-8.76 |
0.193647 |
289 -- 295 |
4 -- 10 |
aerobic ubiquinone synthesis protein SCP2 family protein |
|
_____________288_____296\n_____________|_______|\n5'-GCU...CCGCU_______GCUGG-3'\n______________CGCGUCU\n______________|||||||\n______________GCGCAGA\n3'-UUU...UUUAC_______AAG-5'\n_____________|_______|\n_____________11______3\n |
289 -- 295 |
4 -- 10 |
-11.2085 kcal/mol |
1.2993 kcal/mol |
1.14958 kcal/mol |
288 296@LB@ | |@LB@5'-GCU...CCGCU GCUGG-3'@LB@ CGCGUCU@LB@ |||||||@LB@ GCGCAGA@LB@3'-UUU...UUUAC AAG-5'@LB@ | |@LB@ 11 3@LB@@LB@@LB@Energy -8.76 kcal/mol@LB@Hybridization Energy -11.2085 kcal/mol@LB@Unfolding Energy - mRNA 1.2993 kcal/mol@LB@Unfolding Energy - sRNA 1.14958 kcal/mol@LB@@LB@Position - mRNA 289 -- 295@LB@Position - sRNA 4 -- 10@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 4 -- 10@LB@ |
37 |
0.00241 |
0.2206 |
b2455 |
eutE |
-11.61 |
0.064061 |
286 -- 298 |
3 -- 15 |
aldehyde oxidoreductase ethanolamine utilization protein |
|
_____________285___________299\n_____________|_____________|\n5'-GGU...UCAUG_____G_______CG-3'\n______________AGAUG_GCGUUUU\n______________|:|||_||||:||\n______________UUUAC_CGCAGAA\n3'-UUU...UAUUG_____G_______AG-5'\n_____________|_____________|\n_____________16____________2\n |
292 -- 298 |
3 -- 9 |
-14.5549 kcal/mol |
1.73631 kcal/mol |
1.20903 kcal/mol |
285 299@LB@ | |@LB@5'-GGU...UCAUG G CG-3'@LB@ AGAUG GCGUUUU@LB@ |:||| ||||:||@LB@ UUUAC CGCAGAA@LB@3'-UUU...UAUUG G AG-5'@LB@ | |@LB@ 16 2@LB@@LB@@LB@Energy -11.61 kcal/mol@LB@Hybridization Energy -14.5549 kcal/mol@LB@Unfolding Energy - mRNA 1.73631 kcal/mol@LB@Unfolding Energy - sRNA 1.20903 kcal/mol@LB@@LB@Position - mRNA 286 -- 298@LB@Position - sRNA 3 -- 15@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 3 -- 9@LB@ |
56 |
0.005155 |
0.3024 |
b3091 |
uxaA |
-13.05 |
0.035558 |
147 -- 159 |
6 -- 19 |
altronate hydrolase |
|
_____________146____________160\n_____________|______________|\n5'-CUG...UGCUU______________GACUA...CGC-3'\n______________UAAC_AAUGCGCGU\n______________||||_|||||||||\n______________AUUG_UUACGCGCA\n3'-UUU...CUACU____U_________GAAAG-5'\n_____________|______________|\n_____________20_____________5\n |
153 -- 159 |
6 -- 12 |
-17.3524 kcal/mol |
3.0727 kcal/mol |
1.22941 kcal/mol |
146 160@LB@ | |@LB@5'-CUG...UGCUU GACUA...CGC-3'@LB@ UAAC AAUGCGCGU@LB@ |||| |||||||||@LB@ AUUG UUACGCGCA@LB@3'-UUU...CUACU U GAAAG-5'@LB@ | |@LB@ 20 5@LB@@LB@@LB@Energy -13.05 kcal/mol@LB@Hybridization Energy -17.3524 kcal/mol@LB@Unfolding Energy - mRNA 3.0727 kcal/mol@LB@Unfolding Energy - sRNA 1.22941 kcal/mol@LB@@LB@Position - mRNA 147 -- 159@LB@Position - sRNA 6 -- 19@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 6 -- 12@LB@ |
57 |
0.005155 |
0.3024 |
b3091 |
uxaA |
-13.05 |
0.035558 |
147 -- 159 |
6 -- 19 |
altronate hydrolase |
|
_____________146____________160\n_____________|______________|\n5'-CUG...UGCUU______________GACUA...CGC-3'\n______________UAAC_AAUGCGCGU\n______________||||_|||||||||\n______________AUUG_UUACGCGCA\n3'-UUU...CUACU____U_________GAAAG-5'\n_____________|______________|\n_____________20_____________5\n |
153 -- 159 |
6 -- 12 |
-17.3524 kcal/mol |
3.0727 kcal/mol |
1.22941 kcal/mol |
146 160@LB@ | |@LB@5'-CUG...UGCUU GACUA...CGC-3'@LB@ UAAC AAUGCGCGU@LB@ |||| |||||||||@LB@ AUUG UUACGCGCA@LB@3'-UUU...CUACU U GAAAG-5'@LB@ | |@LB@ 20 5@LB@@LB@@LB@Energy -13.05 kcal/mol@LB@Hybridization Energy -17.3524 kcal/mol@LB@Unfolding Energy - mRNA 3.0727 kcal/mol@LB@Unfolding Energy - sRNA 1.22941 kcal/mol@LB@@LB@Position - mRNA 147 -- 159@LB@Position - sRNA 6 -- 19@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 6 -- 12@LB@ |
183 |
0.01807 |
0.3104 |
b1508 |
hipB |
-7.23 |
0.331427 |
238 -- 247 |
10 -- 19 |
antitoxin of HipAB toxin-antitoxin system |
b1299 b1434 |
_____________237________248\n_____________|__________|\n5'-AUG...GCAAU__________AAUGA...AAA-3'\n______________UGGCGAAUGC\n______________|::|:|||||\n______________AUUGUUUACG\n3'-UUU...CUACU__________CGCAG...AAG-5'\n_____________|__________|\n_____________20_________9\n |
241 -- 247 |
10 -- 16 |
-11.7956 kcal/mol |
3.36082 kcal/mol |
1.20833 kcal/mol |
237 248@LB@ | |@LB@5'-AUG...GCAAU AAUGA...AAA-3'@LB@ UGGCGAAUGC@LB@ |::|:|||||@LB@ AUUGUUUACG@LB@3'-UUU...CUACU CGCAG...AAG-5'@LB@ | |@LB@ 20 9@LB@@LB@@LB@Energy -7.23 kcal/mol@LB@Hybridization Energy -11.7956 kcal/mol@LB@Unfolding Energy - mRNA 3.36082 kcal/mol@LB@Unfolding Energy - sRNA 1.20833 kcal/mol@LB@@LB@Position - mRNA 238 -- 247@LB@Position - sRNA 10 -- 19@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 10 -- 16@LB@ |
178 |
0.01756 |
0.3104 |
b2017 |
yefM |
-12.99 |
0.036476 |
219 -- 231 |
5 -- 18 |
antitoxin of the YoeB-YefM toxin-antitoxin system |
|
_____________218____________232\n_____________|______________|\n5'-AUU...GCUAC______________AGAAU...AUG-3'\n______________AGCGAA_GCGCGUC\n______________|:|:||_|||||||\n______________UUGUUU_CGCGCAG\n3'-UUU...UACUA______A_______AAAG-5'\n_____________|______________|\n_____________19_____________4\n |
225 -- 231 |
5 -- 11 |
-18.6086 kcal/mol |
4.39571 kcal/mol |
1.2243 kcal/mol |
218 232@LB@ | |@LB@5'-AUU...GCUAC AGAAU...AUG-3'@LB@ AGCGAA GCGCGUC@LB@ |:|:|| |||||||@LB@ UUGUUU CGCGCAG@LB@3'-UUU...UACUA A AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -12.99 kcal/mol@LB@Hybridization Energy -18.6086 kcal/mol@LB@Unfolding Energy - mRNA 4.39571 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 219 -- 231@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 5 -- 11@LB@ |
47 |
0.003448 |
0.2484 |
b0614 |
citX |
-10.13 |
0.115098 |
76 -- 91 |
4 -- 17 |
apo-citrate lyase phosphoribosyl-dephospho-CoA transferase |
|
_____________75_______________92\n_____________|________________|\n5'-UUA...GCUGC____AC__________GCUGA...UCA-3'\n______________GCGA__GUGCGCGUCU\n______________:|:|__:|||||||||\n______________UGUU__UACGCGCAGA\n3'-UUU...ACUAU________________AAG-5'\n_____________|________________|\n_____________18_______________3\n |
85 -- 91 |
4 -- 10 |
-19.1919 kcal/mol |
7.83057 kcal/mol |
1.22888 kcal/mol |
75 92@LB@ | |@LB@5'-UUA...GCUGC AC GCUGA...UCA-3'@LB@ GCGA GUGCGCGUCU@LB@ :|:| :|||||||||@LB@ UGUU UACGCGCAGA@LB@3'-UUU...ACUAU AAG-5'@LB@ | |@LB@ 18 3@LB@@LB@@LB@Energy -10.13 kcal/mol@LB@Hybridization Energy -19.1919 kcal/mol@LB@Unfolding Energy - mRNA 7.83057 kcal/mol@LB@Unfolding Energy - sRNA 1.22888 kcal/mol@LB@@LB@Position - mRNA 76 -- 91@LB@Position - sRNA 4 -- 17@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 4 -- 10@LB@ |
65 |
0.005951 |
0.3087 |
b0064 |
araC |
-16.15 |
0.009664 |
167 -- 213 |
8 -- 48 |
ara regulon transcriptional activator; autorepressor |
|
_____________166_____________________________________________214\n_____________|_______________________________________________|\n5'-GGA...CAAUU______U_________GGU____GU____AAAGUA____U__A____AAAAU...AUU-3'\n______________GGUUUC_UCUCUGAAU___GGGA__AUGA______UGGC_GA_GCGC\n______________::||||_|||||||||___||||__||||______|::|_:|_||||\n______________UUAAAG_AGAGACUUA___CCCU__UACU______AUUG_UU_CGCG\n3'-UUU...CGGUU______U_________AGU____AC______________U__A____CAGAAAG-5'\n_____________|_______________________________________________|\n_____________49______________________________________________7\n |
174 -- 180 |
35 -- 41 |
-36.5778 kcal/mol |
10.9694 kcal/mol |
9.45905 kcal/mol |
166 214@LB@ | |@LB@5'-GGA...CAAUU U GGU GU AAAGUA U A AAAAU...AUU-3'@LB@ GGUUUC UCUCUGAAU GGGA AUGA UGGC GA GCGC@LB@ ::|||| ||||||||| |||| |||| |::| :| ||||@LB@ UUAAAG AGAGACUUA CCCU UACU AUUG UU CGCG@LB@3'-UUU...CGGUU U AGU AC U A CAGAAAG-5'@LB@ | |@LB@ 49 7@LB@@LB@@LB@Energy -16.15 kcal/mol@LB@Hybridization Energy -36.5778 kcal/mol@LB@Unfolding Energy - mRNA 10.9694 kcal/mol@LB@Unfolding Energy - sRNA 9.45905 kcal/mol@LB@@LB@Position - mRNA 167 -- 213@LB@Position - sRNA 8 -- 48@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 35 -- 41@LB@ |
35 |
0.002165 |
0.2094 |
b2714 |
ascG |
-14.61 |
0.018547 |
188 -- 213 |
10 -- 30 |
asc operon transcriptional repressor; prpBC operon repressor |
|
_____________187________________________214\n_____________|__________________________|\n5'-AAA...UGUAA________AAA_________CG____UGGAA...AAG-3'\n______________AGGGAUGA___UGAUGACGA__AUGC\n______________||||||||___||||:||:|__||||\n______________UCCCUACU___ACUAUUGUU__UACG\n3'-UUU...UUAAG__________________________CGCAG...AAG-5'\n_____________|__________________________|\n_____________31_________________________9\n |
201 -- 207 |
14 -- 20 |
-25.4703 kcal/mol |
3.44882 kcal/mol |
7.41066 kcal/mol |
187 214@LB@ | |@LB@5'-AAA...UGUAA AAA CG UGGAA...AAG-3'@LB@ AGGGAUGA UGAUGACGA AUGC@LB@ |||||||| ||||:||:| ||||@LB@ UCCCUACU ACUAUUGUU UACG@LB@3'-UUU...UUAAG CGCAG...AAG-5'@LB@ | |@LB@ 31 9@LB@@LB@@LB@Energy -14.61 kcal/mol@LB@Hybridization Energy -25.4703 kcal/mol@LB@Unfolding Energy - mRNA 3.44882 kcal/mol@LB@Unfolding Energy - sRNA 7.41066 kcal/mol@LB@@LB@Position - mRNA 188 -- 213@LB@Position - sRNA 10 -- 30@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 14 -- 20@LB@ |
83 |
0.007683 |
0.3104 |
b4244 |
pyrI |
-7.62 |
0.290375 |
210 -- 222 |
10 -- 21 |
aspartate carbamoyltransferase regulatory subunit |
|
_____________209___________223\n_____________|_____________|\n5'-UUC...CACAC__________U__AGGUU...UCA-3'\n______________GAUAAUAAAU_GC\n______________|||||:||||_||\n______________CUAUUGUUUA_CG\n3'-UUU...UACUA_____________CGCAG...AAG-5'\n_____________|_____________|\n_____________22____________9\n |
213 -- 219 |
12 -- 18 |
-11.1174 kcal/mol |
2.26673 kcal/mol |
1.23076 kcal/mol |
209 223@LB@ | |@LB@5'-UUC...CACAC U AGGUU...UCA-3'@LB@ GAUAAUAAAU GC@LB@ |||||:|||| ||@LB@ CUAUUGUUUA CG@LB@3'-UUU...UACUA CGCAG...AAG-5'@LB@ | |@LB@ 22 9@LB@@LB@@LB@Energy -7.62 kcal/mol@LB@Hybridization Energy -11.1174 kcal/mol@LB@Unfolding Energy - mRNA 2.26673 kcal/mol@LB@Unfolding Energy - sRNA 1.23076 kcal/mol@LB@@LB@Position - mRNA 210 -- 222@LB@Position - sRNA 10 -- 21@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 12 -- 18@LB@ |
92 |
0.009361 |
0.3104 |
b3652 |
recG |
-7.88 |
0.265686 |
265 -- 278 |
7 -- 20 |
ATP-dependent DNA helicase |
|
_____________264_____________279\n_____________|_______________|\n5'-CAA...ACUUA________C______AAAAU...UGC-3'\n______________GUAACAAA_UG_GCG\n______________:|||||||_||_|||\n______________UAUUGUUU_AC_CGC\n3'-UUU...ACUAC___________G___AGAAAG-5'\n_____________|_______________|\n_____________21______________6\n |
266 -- 272 |
13 -- 19 |
-11.4583 kcal/mol |
2.34189 kcal/mol |
1.23906 kcal/mol |
264 279@LB@ | |@LB@5'-CAA...ACUUA C AAAAU...UGC-3'@LB@ GUAACAAA UG GCG@LB@ :||||||| || |||@LB@ UAUUGUUU AC CGC@LB@3'-UUU...ACUAC G AGAAAG-5'@LB@ | |@LB@ 21 6@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -11.4583 kcal/mol@LB@Unfolding Energy - mRNA 2.34189 kcal/mol@LB@Unfolding Energy - sRNA 1.23906 kcal/mol@LB@@LB@Position - mRNA 265 -- 278@LB@Position - sRNA 7 -- 20@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 13 -- 19@LB@ |
93 |
0.009444 |
0.3104 |
b3822 |
recQ |
-7.42 |
0.310549 |
176 -- 212 |
9 -- 45 |
ATP-dependent DNA helicase |
|
_____________175____________________________________213\n_____________|______________________________________|\n5'-CGC...CUGUU________A__CAA__________AU______CAG___GAAGU...UUA-3'\n______________UUUAUUUC_GG___UC_GGGGUGA__GUGGCG___GCG\n______________||:||:||_|:___||_|||:|||__:|::|:___|||\n______________AAGUAGAG_CU___AG_CCCUACU__UAUUGU___CGC\n3'-UUU...UUUUA________A__UA___U_______AC______UUA___GCAGAAAG-5'\n_____________|______________________________________|\n_____________46_____________________________________8\n |
192 -- 198 |
23 -- 29 |
-25.6556 kcal/mol |
8.78202 kcal/mol |
9.45193 kcal/mol |
175 213@LB@ | |@LB@5'-CGC...CUGUU A CAA AU CAG GAAGU...UUA-3'@LB@ UUUAUUUC GG UC GGGGUGA GUGGCG GCG@LB@ ||:||:|| |: || |||:||| :|::|: |||@LB@ AAGUAGAG CU AG CCCUACU UAUUGU CGC@LB@3'-UUU...UUUUA A UA U AC UUA GCAGAAAG-5'@LB@ | |@LB@ 46 8@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -25.6556 kcal/mol@LB@Unfolding Energy - mRNA 8.78202 kcal/mol@LB@Unfolding Energy - sRNA 9.45193 kcal/mol@LB@@LB@Position - mRNA 176 -- 212@LB@Position - sRNA 9 -- 45@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 23 -- 29@LB@ |
124 |
0.0124 |
0.3104 |
b1860 |
ruvB |
-8.20 |
0.236824 |
252 -- 265 |
8 -- 20 |
ATP-dependent DNA helicase component of RuvABC resolvasome |
|
_____________251____________266\n_____________|______________|\n5'-ACG...AAGAU_________C____CAUUC...GUC-3'\n______________GUAGCAGAU_GCGC\n______________:||:||:||_||||\n______________UAUUGUUUA_CGCG\n3'-UUU...ACUAC______________CAGAAAG-5'\n_____________|______________|\n_____________21_____________7\n |
252 -- 258 |
14 -- 20 |
-14.7986 kcal/mol |
5.36112 kcal/mol |
1.23367 kcal/mol |
251 266@LB@ | |@LB@5'-ACG...AAGAU C CAUUC...GUC-3'@LB@ GUAGCAGAU GCGC@LB@ :||:||:|| ||||@LB@ UAUUGUUUA CGCG@LB@3'-UUU...ACUAC CAGAAAG-5'@LB@ | |@LB@ 21 7@LB@@LB@@LB@Energy -8.20 kcal/mol@LB@Hybridization Energy -14.7986 kcal/mol@LB@Unfolding Energy - mRNA 5.36112 kcal/mol@LB@Unfolding Energy - sRNA 1.23367 kcal/mol@LB@@LB@Position - mRNA 252 -- 265@LB@Position - sRNA 8 -- 20@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 14 -- 20@LB@ |
84 |
0.008129 |
0.3104 |
b2579 |
grcA |
-9.71 |
0.135356 |
279 -- 291 |
5 -- 18 |
autonomous glycyl radical cofactor |
|
_____________278____________292\n_____________|______________|\n5'-UUG...AAAAA______________GCAUC...UUG-3'\n______________GGCGAA_GCGCGUU\n______________::|:||_||||||:\n______________UUGUUU_CGCGCAG\n3'-UUU...UACUA______A_______AAAG-5'\n_____________|______________|\n_____________19_____________4\n |
285 -- 291 |
5 -- 11 |
-16.0784 kcal/mol |
5.14159 kcal/mol |
1.2243 kcal/mol |
278 292@LB@ | |@LB@5'-UUG...AAAAA GCAUC...UUG-3'@LB@ GGCGAA GCGCGUU@LB@ ::|:|| ||||||:@LB@ UUGUUU CGCGCAG@LB@3'-UUU...UACUA A AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -9.71 kcal/mol@LB@Hybridization Energy -16.0784 kcal/mol@LB@Unfolding Energy - mRNA 5.14159 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 279 -- 291@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 5 -- 11@LB@ |
72 |
0.006739 |
0.3087 |
b2520 |
yfhM |
-8.19 |
0.237735 |
190 -- 217 |
6 -- 30 |
bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein |
|
_____________189__________________________218\n_____________|____________________________|\n5'-CUC...GUGGC________AAA____AA____UA_____AGCCG...CUU-3'\n______________AGGGAUGA___AUGA__AAGU__CGCGU\n______________||||||||___||:|__||:|__|||||\n______________UCCCUACU___UAUU__UUUA__GCGCA\n3'-UUU...UUAAG________AC_____G_____C______GAAAG-5'\n_____________|____________________________|\n_____________31___________________________5\n |
191 -- 197 |
23 -- 29 |
-19.496 kcal/mol |
3.87755 kcal/mol |
7.4255 kcal/mol |
189 218@LB@ | |@LB@5'-CUC...GUGGC AAA AA UA AGCCG...CUU-3'@LB@ AGGGAUGA AUGA AAGU CGCGU@LB@ |||||||| ||:| ||:| |||||@LB@ UCCCUACU UAUU UUUA GCGCA@LB@3'-UUU...UUAAG AC G C GAAAG-5'@LB@ | |@LB@ 31 5@LB@@LB@@LB@Energy -8.19 kcal/mol@LB@Hybridization Energy -19.496 kcal/mol@LB@Unfolding Energy - mRNA 3.87755 kcal/mol@LB@Unfolding Energy - sRNA 7.4255 kcal/mol@LB@@LB@Position - mRNA 190 -- 217@LB@Position - sRNA 6 -- 30@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 23 -- 29@LB@ |
89 |
0.009028 |
0.3104 |
b0529 |
folD |
-8.62 |
0.203566 |
239 -- 251 |
4 -- 17 |
bifunctional 5 10-methylene-tetrahydrofolate dehydrogenase/ 5 10-methylene-tetrahydrofolate cyclohydrolase |
|
_____________238____________252\n_____________|______________|\n5'-CAA...GCGCA______________GAAGU...CAC-3'\n______________GCAGGUGCGC_UCU\n______________:||::|||||_|||\n______________UGUUUACGCG_AGA\n3'-UUU...ACUAU__________C___AAG-5'\n_____________|______________|\n_____________18_____________3\n |
242 -- 248 |
8 -- 14 |
-17.587 kcal/mol |
7.73476 kcal/mol |
1.22888 kcal/mol |
238 252@LB@ | |@LB@5'-CAA...GCGCA GAAGU...CAC-3'@LB@ GCAGGUGCGC UCU@LB@ :||::||||| |||@LB@ UGUUUACGCG AGA@LB@3'-UUU...ACUAU C AAG-5'@LB@ | |@LB@ 18 3@LB@@LB@@LB@Energy -8.62 kcal/mol@LB@Hybridization Energy -17.587 kcal/mol@LB@Unfolding Energy - mRNA 7.73476 kcal/mol@LB@Unfolding Energy - sRNA 1.22888 kcal/mol@LB@@LB@Position - mRNA 239 -- 251@LB@Position - sRNA 4 -- 17@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 8 -- 14@LB@ |
125 |
0.01241 |
0.3104 |
b0002 |
thrA |
-8.21 |
0.235915 |
191 -- 205 |
9 -- 21 |
Bifunctional aspartokinase/homoserine dehydrogenase 1 |
|
_____________190_____________206\n_____________|_______________|\n5'-CCA...AACGA________CC_____AGUGU...UGG-3'\n______________GGUAACAA__AUGCG\n______________|:||||||__|||||\n______________CUAUUGUU__UACGC\n3'-UUU...UACUA_______________GCAGAAAG-5'\n_____________|_______________|\n_____________22______________8\n |
192 -- 198 |
14 -- 20 |
-12.9357 kcal/mol |
3.48482 kcal/mol |
1.23627 kcal/mol |
190 206@LB@ | |@LB@5'-CCA...AACGA CC AGUGU...UGG-3'@LB@ GGUAACAA AUGCG@LB@ |:|||||| |||||@LB@ CUAUUGUU UACGC@LB@3'-UUU...UACUA GCAGAAAG-5'@LB@ | |@LB@ 22 8@LB@@LB@@LB@Energy -8.21 kcal/mol@LB@Hybridization Energy -12.9357 kcal/mol@LB@Unfolding Energy - mRNA 3.48482 kcal/mol@LB@Unfolding Energy - sRNA 1.23627 kcal/mol@LB@@LB@Position - mRNA 191 -- 205@LB@Position - sRNA 9 -- 21@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 14 -- 20@LB@ |
170 |
0.01687 |
0.3104 |
b0033 |
carB |
-11.35 |
0.071227 |
1 -- 15 |
5 -- 17 |
carbamoyl-phosphate synthase large subunit |
|
______________1______________16\n______________|______________|\n___________5'-_____CC________ACGCA...CGU-3'\n______________GCAAA__UGCGUGUC\n______________:||||__||||:|||\n______________UGUUU__ACGCGCAG\n3'-UUU...ACUAU_______________AAAG-5'\n_____________|_______________|\n_____________18______________4\n |
9 -- 15 |
5 -- 11 |
-15.984 kcal/mol |
3.41554 kcal/mol |
1.22241 kcal/mol |
1 16@LB@ | |@LB@ 5'- CC ACGCA...CGU-3'@LB@ GCAAA UGCGUGUC@LB@ :|||| ||||:|||@LB@ UGUUU ACGCGCAG@LB@3'-UUU...ACUAU AAAG-5'@LB@ | |@LB@ 18 4@LB@@LB@@LB@Energy -11.35 kcal/mol@LB@Hybridization Energy -15.984 kcal/mol@LB@Unfolding Energy - mRNA 3.41554 kcal/mol@LB@Unfolding Energy - sRNA 1.22241 kcal/mol@LB@@LB@Position - mRNA 1 -- 15@LB@Position - sRNA 5 -- 17@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 5 -- 11@LB@ |
168 |
0.01645 |
0.3104 |
b3720 |
bglH |
-8.64 |
0.202347 |
15 -- 28 |
9 -- 22 |
carbohydrate-specific outer membrane porin cryptic |
|
_____________14_____________29\n_____________|______________|\n5'-AUU...GAUCG_________UG___AAGGA...GCC-3'\n______________UGAUGAUAA__GCG\n______________||||:|:||__|||\n______________ACUAUUGUU__CGC\n3'-UUU...CUACU_________UA___GCAGAAAG-5'\n_____________|______________|\n_____________23_____________8\n |
17 -- 23 |
14 -- 20 |
-13.7208 kcal/mol |
3.8428 kcal/mol |
1.23827 kcal/mol |
14 29@LB@ | |@LB@5'-AUU...GAUCG UG AAGGA...GCC-3'@LB@ UGAUGAUAA GCG@LB@ ||||:|:|| |||@LB@ ACUAUUGUU CGC@LB@3'-UUU...CUACU UA GCAGAAAG-5'@LB@ | |@LB@ 23 8@LB@@LB@@LB@Energy -8.64 kcal/mol@LB@Hybridization Energy -13.7208 kcal/mol@LB@Unfolding Energy - mRNA 3.8428 kcal/mol@LB@Unfolding Energy - sRNA 1.23827 kcal/mol@LB@@LB@Position - mRNA 15 -- 28@LB@Position - sRNA 9 -- 22@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 14 -- 20@LB@ |
9 |
0.000195 |
0.07335 |
b1830 |
prc |
-15.09 |
0.015143 |
131 -- 161 |
7 -- 38 |
carboxy-terminal protease for penicillin-binding protein 3 |
|
_____________130______________________________162\n_____________|________________________________|\n5'-CGA...UCCAG___________U___UCUU____U________CAGAA...CGG-3'\n______________CUGAAUUCGGG_AUG____UGAU__GUGCGCG\n______________||||||||:||_|||____|:|:__:||||||\n______________GACUUAAGUCC_UAC____AUUG__UACGCGC\n3'-UUU...GUAGA___________C___UACU____UU_______AGAAAG-5'\n_____________|________________________________|\n_____________39_______________________________6\n |
155 -- 161 |
7 -- 13 |
-31.7028 kcal/mol |
7.25259 kcal/mol |
9.35859 kcal/mol |
130 162@LB@ | |@LB@5'-CGA...UCCAG U UCUU U CAGAA...CGG-3'@LB@ CUGAAUUCGGG AUG UGAU GUGCGCG@LB@ ||||||||:|| ||| |:|: :||||||@LB@ GACUUAAGUCC UAC AUUG UACGCGC@LB@3'-UUU...GUAGA C UACU UU AGAAAG-5'@LB@ | |@LB@ 39 6@LB@@LB@@LB@Energy -15.09 kcal/mol@LB@Hybridization Energy -31.7028 kcal/mol@LB@Unfolding Energy - mRNA 7.25259 kcal/mol@LB@Unfolding Energy - sRNA 9.35859 kcal/mol@LB@@LB@Position - mRNA 131 -- 161@LB@Position - sRNA 7 -- 38@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 7 -- 13@LB@ |
116 |
0.01184 |
0.3104 |
b1218 |
chaC |
-12.45 |
0.045440 |
10 -- 29 |
8 -- 30 |
cation transport regulator |
|
_____________9_______________________30\n_____________|_______________________|\n5'-AUA...GCCAA_______________________AUAAA...CGC-3'\n______________AGGG__GAUGAUGAUAAAUG_GC\n______________||||__||||||:|:|||||_||\n______________UCCC__CUACUAUUGUUUAC_CG\n3'-UUU...UUAAG____UA______________G__CAGAAAG-5'\n_____________|_______________________|\n_____________31______________________7\n |
21 -- 27 |
11 -- 17 |
-25.0616 kcal/mol |
5.19055 kcal/mol |
7.41684 kcal/mol |
9 30@LB@ | |@LB@5'-AUA...GCCAA AUAAA...CGC-3'@LB@ AGGG GAUGAUGAUAAAUG GC@LB@ |||| ||||||:|:||||| ||@LB@ UCCC CUACUAUUGUUUAC CG@LB@3'-UUU...UUAAG UA G CAGAAAG-5'@LB@ | |@LB@ 31 7@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -25.0616 kcal/mol@LB@Unfolding Energy - mRNA 5.19055 kcal/mol@LB@Unfolding Energy - sRNA 7.41684 kcal/mol@LB@@LB@Position - mRNA 10 -- 29@LB@Position - sRNA 8 -- 30@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 11 -- 17@LB@ |
4 |
4.059e-05 |
0.03436 |
b2748 |
ftsB |
-19.92 |
0.001892 |
154 -- 190 |
1 -- 44 |
cell division protein |
|
_____________153___________________________________________191\n_____________|_____________________________________________|\n5'-GGG...UAGAG_______C____G__U_____________________________AGGGG...AUG-3'\n______________UCGUCUU_GGAU_CA_GGGAUGAUGA_______UGC_CGUUUUUC\n______________||:|||:_|:||_||_||||||||||_______|||_|||:||||\n______________AGUAGAG_CUUA_GU_CCCUACUACU_______ACG_GCAGAAAG\n3'-UUU...UUUAA_______A____A_____________AUUGUUU___C________-5'\n_____________|____________________________________________|\n_____________45___________________________________________1\n |
184 -- 190 |
1 -- 7 |
-40.1368 kcal/mol |
10.7611 kcal/mol |
9.45578 kcal/mol |
153 191@LB@ | |@LB@5'-GGG...UAGAG C G U AGGGG...AUG-3'@LB@ UCGUCUU GGAU CA GGGAUGAUGA UGC CGUUUUUC@LB@ ||:|||: |:|| || |||||||||| ||| |||:||||@LB@ AGUAGAG CUUA GU CCCUACUACU ACG GCAGAAAG@LB@3'-UUU...UUUAA A A AUUGUUU C -5'@LB@ | |@LB@ 45 1@LB@@LB@@LB@Energy -19.92 kcal/mol@LB@Hybridization Energy -40.1368 kcal/mol@LB@Unfolding Energy - mRNA 10.7611 kcal/mol@LB@Unfolding Energy - sRNA 9.45578 kcal/mol@LB@@LB@Position - mRNA 154 -- 190@LB@Position - sRNA 1 -- 44@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 1 -- 7@LB@ |
82 |
0.007621 |
0.3104 |
b3388 |
damX |
-7.48 |
0.304490 |
3 -- 13 |
8 -- 18 |
cell division protein that binds to the septal ring |
|
_____________2___________14\n_____________|___________|\n_________5'-GG__G________UUAAU...AAC-3'\n______________GA_AGAUGCGC\n______________:|_|:||||||\n______________UU_UUUACGCG\n3'-UUU...UACUA__G________CAGAAAG-5'\n_____________|___________|\n_____________19__________7\n |
7 -- 13 |
8 -- 14 |
-13.7317 kcal/mol |
5.04786 kcal/mol |
1.20363 kcal/mol |
2 14@LB@ | |@LB@ 5'-GG G UUAAU...AAC-3'@LB@ GA AGAUGCGC@LB@ :| |:||||||@LB@ UU UUUACGCG@LB@3'-UUU...UACUA G CAGAAAG-5'@LB@ | |@LB@ 19 7@LB@@LB@@LB@Energy -7.48 kcal/mol@LB@Hybridization Energy -13.7317 kcal/mol@LB@Unfolding Energy - mRNA 5.04786 kcal/mol@LB@Unfolding Energy - sRNA 1.20363 kcal/mol@LB@@LB@Position - mRNA 3 -- 13@LB@Position - sRNA 8 -- 18@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 8 -- 14@LB@ |
30 |
0.001906 |
0.2094 |
b0616 |
citE |
-12.56 |
0.043465 |
103 -- 116 |
8 -- 21 |
citrate lyase citryl-ACP lyase (beta) subunit |
|
_____________102____________117\n_____________|______________|\n5'-CAA...AUGUC_________G____ACUGG...UCU-3'\n______________GAUGACAAA_GCGC\n______________|||:|||||_||||\n______________CUAUUGUUU_CGCG\n3'-UUU...UACUA_________A____CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
105 -- 111 |
13 -- 19 |
-17.9482 kcal/mol |
4.14919 kcal/mol |
1.23638 kcal/mol |
102 117@LB@ | |@LB@5'-CAA...AUGUC G ACUGG...UCU-3'@LB@ GAUGACAAA GCGC@LB@ |||:||||| ||||@LB@ CUAUUGUUU CGCG@LB@3'-UUU...UACUA A CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -12.56 kcal/mol@LB@Hybridization Energy -17.9482 kcal/mol@LB@Unfolding Energy - mRNA 4.14919 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 103 -- 116@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 13 -- 19@LB@ |
60 |
0.00555 |
0.3084 |
b2062 |
wza |
-10.85 |
0.086669 |
18 -- 25 |
4 -- 11 |
colanic acid export protein; outer membrane auxillary lipoprotein |
|
_____________17_______26\n_____________|________|\n5'-AAA...CGGUA________GGAUG...GCA-3'\n______________GCGUGUCU\n______________|||:||||\n______________CGCGCAGA\n3'-UUU...GUUUA________AAG-5'\n_____________|________|\n_____________12_______3\n |
19 -- 25 |
4 -- 10 |
-13.9362 kcal/mol |
1.92535 kcal/mol |
1.15639 kcal/mol |
17 26@LB@ | |@LB@5'-AAA...CGGUA GGAUG...GCA-3'@LB@ GCGUGUCU@LB@ |||:||||@LB@ CGCGCAGA@LB@3'-UUU...GUUUA AAG-5'@LB@ | |@LB@ 12 3@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -13.9362 kcal/mol@LB@Unfolding Energy - mRNA 1.92535 kcal/mol@LB@Unfolding Energy - sRNA 1.15639 kcal/mol@LB@@LB@Position - mRNA 18 -- 25@LB@Position - sRNA 4 -- 11@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 4 -- 10@LB@ |
29 |
0.001844 |
0.2094 |
b2047 |
wcaJ |
-13.26 |
0.032615 |
200 -- 222 |
7 -- 21 |
colanic biosynthesis UDP-glucose lipid carrier transferase |
|
_____________199_____________________223\n_____________|_______________________|\n5'-GCA...ACAAC__________CUAAAAAA_____AGCGA...UAU-3'\n______________GAUGACAAAU________GCGCG\n______________|||:||||||________|||||\n______________CUAUUGUUUA________CGCGC\n3'-UUU...UACUA_______________________AGAAAG-5'\n_____________|_______________________|\n_____________22______________________6\n |
203 -- 209 |
12 -- 18 |
-17.5174 kcal/mol |
3.01646 kcal/mol |
1.24179 kcal/mol |
199 223@LB@ | |@LB@5'-GCA...ACAAC CUAAAAAA AGCGA...UAU-3'@LB@ GAUGACAAAU GCGCG@LB@ |||:|||||| |||||@LB@ CUAUUGUUUA CGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -13.26 kcal/mol@LB@Hybridization Energy -17.5174 kcal/mol@LB@Unfolding Energy - mRNA 3.01646 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 200 -- 222@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 12 -- 18@LB@ |
51 |
0.004574 |
0.3024 |
b3529 |
yhjK |
-9.99 |
0.121635 |
195 -- 213 |
1 -- 18 |
cyclic-di-GMP phosphodiesterase |
|
_____________194_________________214\n_____________|___________________|\n5'-AGC...GGGGA_____UU_______AAG__GCUCG...AUC-3'\n______________GACAA__UGCGCGU___UC\n______________:||||__|||||||___||\n______________UUGUU__ACGCGCA___AG\n3'-UUU...UACUA_____U________GAA__-5'\n_____________|__________________|\n_____________19_________________1\n |
202 -- 208 |
6 -- 12 |
-16.8324 kcal/mol |
5.6017 kcal/mol |
1.24077 kcal/mol |
194 214@LB@ | |@LB@5'-AGC...GGGGA UU AAG GCUCG...AUC-3'@LB@ GACAA UGCGCGU UC@LB@ :|||| ||||||| ||@LB@ UUGUU ACGCGCA AG@LB@3'-UUU...UACUA U GAA -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -9.99 kcal/mol@LB@Hybridization Energy -16.8324 kcal/mol@LB@Unfolding Energy - mRNA 5.6017 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 195 -- 213@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 6 -- 12@LB@ |
119 |
0.01215 |
0.3104 |
b3691 |
dgoT |
-8.17 |
0.239341 |
58 -- 68 |
8 -- 21 |
D-galactonate transporter |
|
_____________57_____________69\n_____________|______________|\n5'-GUG...AUGAA______________AGCAG...CCA-3'\n______________GAUAACA___GCGU\n______________|||||||___|||:\n______________CUAUUGU___CGCG\n3'-UUU...UACUA_______UUA____CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
58 -- 64 |
15 -- 21 |
-12.2033 kcal/mol |
2.79285 kcal/mol |
1.23638 kcal/mol |
57 69@LB@ | |@LB@5'-GUG...AUGAA AGCAG...CCA-3'@LB@ GAUAACA GCGU@LB@ ||||||| |||:@LB@ CUAUUGU CGCG@LB@3'-UUU...UACUA UUA CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -8.17 kcal/mol@LB@Hybridization Energy -12.2033 kcal/mol@LB@Unfolding Energy - mRNA 2.79285 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 58 -- 68@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 15 -- 21@LB@ |
152 |
0.01445 |
0.3104 |
b0385 |
yaiC |
-12.21 |
0.050169 |
39 -- 67 |
12 -- 42 |
diguanylate cyclase cellulose regualtor |
|
_____________38_______________________________68\n_____________|________________________________|\n5'-CAA...CAACA_______________U______C_________UUAUG...CCG-3'\n______________AUCUCUGAA___AGG_GAUGAU_GUAAUAAGU\n______________|||||||||___|||_||||||_:|||:||:|\n______________UAGAGACUU___UCC_CUACUA_UAUUGUUUA\n3'-UUU...UAAAG_________AAG__________C_________CGCGC...AAG-5'\n_____________|________________________________|\n_____________43_______________________________11\n |
40 -- 46 |
35 -- 41 |
-28.8147 kcal/mol |
7.19368 kcal/mol |
9.40905 kcal/mol |
38 68@LB@ | |@LB@5'-CAA...CAACA U C UUAUG...CCG-3'@LB@ AUCUCUGAA AGG GAUGAU GUAAUAAGU@LB@ ||||||||| ||| |||||| :|||:||:|@LB@ UAGAGACUU UCC CUACUA UAUUGUUUA@LB@3'-UUU...UAAAG AAG C CGCGC...AAG-5'@LB@ | |@LB@ 43 11@LB@@LB@@LB@Energy -12.21 kcal/mol@LB@Hybridization Energy -28.8147 kcal/mol@LB@Unfolding Energy - mRNA 7.19368 kcal/mol@LB@Unfolding Energy - sRNA 9.40905 kcal/mol@LB@@LB@Position - mRNA 39 -- 67@LB@Position - sRNA 12 -- 42@LB@Position Seed - mRNA 40 -- 46@LB@Position Seed - sRNA 35 -- 41@LB@ |
20 |
0.0008552 |
0.1448 |
b4137 |
cutA |
-9.23 |
0.162618 |
220 -- 236 |
1 -- 16 |
divalent-cation tolerance protein copper sensitivity |
|
_____________219_______________237\n_____________|_________________|\n5'-CAA...AAGUU_____AC_______G__GUGGU...CGG-3'\n______________CGAAU__CGCGUCU_UC\n______________|:|||__|||||||_||\n______________GUUUA__GCGCAGA_AG\n3'-UUU...CUAUU_____C________A__-5'\n_____________|________________|\n_____________17_______________1\n |
227 -- 233 |
4 -- 10 |
-14.9299 kcal/mol |
4.46216 kcal/mol |
1.23857 kcal/mol |
219 237@LB@ | |@LB@5'-CAA...AAGUU AC G GUGGU...CGG-3'@LB@ CGAAU CGCGUCU UC@LB@ |:||| ||||||| ||@LB@ GUUUA GCGCAGA AG@LB@3'-UUU...CUAUU C A -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -9.23 kcal/mol@LB@Hybridization Energy -14.9299 kcal/mol@LB@Unfolding Energy - mRNA 4.46216 kcal/mol@LB@Unfolding Energy - sRNA 1.23857 kcal/mol@LB@@LB@Position - mRNA 220 -- 236@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 4 -- 10@LB@ |
49 |
0.004401 |
0.299 |
b0093 |
ftsQ |
-10.19 |
0.112476 |
259 -- 274 |
4 -- 20 |
divisome assembly protein membrane anchored protein involved in growth of wall at septum |
|
_____________258_______________275\n_____________|_________________|\n5'-GCU...CCGCA________A________GGCGG...CCG-3'\n______________AUAAUGGA__CGCGUCU\n______________||||:::|__|||||||\n______________UAUUGUUU__GCGCAGA\n3'-UUU...ACUAC________AC_______AAG-5'\n_____________|_________________|\n_____________21________________3\n |
268 -- 274 |
4 -- 10 |
-13.8485 kcal/mol |
2.40331 kcal/mol |
1.25368 kcal/mol |
258 275@LB@ | |@LB@5'-GCU...CCGCA A GGCGG...CCG-3'@LB@ AUAAUGGA CGCGUCU@LB@ ||||:::| |||||||@LB@ UAUUGUUU GCGCAGA@LB@3'-UUU...ACUAC AC AAG-5'@LB@ | |@LB@ 21 3@LB@@LB@@LB@Energy -10.19 kcal/mol@LB@Hybridization Energy -13.8485 kcal/mol@LB@Unfolding Energy - mRNA 2.40331 kcal/mol@LB@Unfolding Energy - sRNA 1.25368 kcal/mol@LB@@LB@Position - mRNA 259 -- 274@LB@Position - sRNA 4 -- 20@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 4 -- 10@LB@ |
114 |
0.01161 |
0.3104 |
b3392 |
hofP |
-8.60 |
0.204995 |
138 -- 147 |
1 -- 11 |
DNA catabolic protein |
|
_____________137_________148\n_____________|___________|\n5'-ACU...CGUGA___________GUUAA...GCG-3'\n______________GC_CGUUUUUC\n______________||_|||:||||\n______________CG_GCAGAAAG\n3'-UUU...GUUUA__C________-5'\n_____________|__________|\n_____________12_________1\n |
141 -- 147 |
1 -- 7 |
-12.6405 kcal/mol |
2.86562 kcal/mol |
1.17076 kcal/mol |
137 148@LB@ | |@LB@5'-ACU...CGUGA GUUAA...GCG-3'@LB@ GC CGUUUUUC@LB@ || |||:||||@LB@ CG GCAGAAAG@LB@3'-UUU...GUUUA C -5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -12.6405 kcal/mol@LB@Unfolding Energy - mRNA 2.86562 kcal/mol@LB@Unfolding Energy - sRNA 1.17076 kcal/mol@LB@@LB@Position - mRNA 138 -- 147@LB@Position - sRNA 1 -- 11@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 1 -- 7@LB@ |
120 |
0.01222 |
0.3104 |
b0916 |
ycaQ |
-9.32 |
0.156865 |
225 -- 243 |
1 -- 17 |
DUF1006 family protein with C-terminal wHTH domain |
|
_____________224_________________244\n_____________|___________________|\n5'-UGG...CCCUU__U_________AAUC___ACCUU...AUA-3'\n______________GC_GAUGCGCGU____UUC\n______________:|_:||||||||____|||\n______________UG_UUACGCGCA____AAG\n3'-UUU...ACUAU__U_________GA_____-5'\n_____________|__________________|\n_____________18_________________1\n |
230 -- 236 |
6 -- 12 |
-16.5738 kcal/mol |
6.00902 kcal/mol |
1.23994 kcal/mol |
224 244@LB@ | |@LB@5'-UGG...CCCUU U AAUC ACCUU...AUA-3'@LB@ GC GAUGCGCGU UUC@LB@ :| :|||||||| |||@LB@ UG UUACGCGCA AAG@LB@3'-UUU...ACUAU U GA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -16.5738 kcal/mol@LB@Unfolding Energy - mRNA 6.00902 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 225 -- 243@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 6 -- 12@LB@ |
137 |
0.01327 |
0.3104 |
b3858 |
yihD |
-10.36 |
0.105347 |
5 -- 11 |
5 -- 11 |
DUF1040 protein YihD |
|
_____________4_______12\n_____________|_______|\n_______5'-AUAA_______AGCGA...CGA-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
5 -- 11 |
5 -- 11 |
-14.974 kcal/mol |
3.50324 kcal/mol |
1.11145 kcal/mol |
4 12@LB@ | |@LB@ 5'-AUAA AGCGA...CGA-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -10.36 kcal/mol@LB@Hybridization Energy -14.974 kcal/mol@LB@Unfolding Energy - mRNA 3.50324 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 5 -- 11@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 5 -- 11@LB@ |
113 |
0.01159 |
0.3104 |
b1279 |
yciS |
-9.20 |
0.164515 |
90 -- 101 |
6 -- 18 |
DUF1049 family inner membrane protein function unknown |
|
_____________89____________102\n_____________|_____________|\n5'-ACC...UCAUC_____________GGAUG...UGU-3'\n______________AAC_AAUGCGUGU\n______________|||_||||||:||\n______________UUG_UUACGCGCA\n3'-UUU...UACUA___U_________GAAAG-5'\n_____________|_____________|\n_____________19____________5\n |
95 -- 101 |
6 -- 12 |
-13.4585 kcal/mol |
3.04139 kcal/mol |
1.21878 kcal/mol |
89 102@LB@ | |@LB@5'-ACC...UCAUC GGAUG...UGU-3'@LB@ AAC AAUGCGUGU@LB@ ||| ||||||:||@LB@ UUG UUACGCGCA@LB@3'-UUU...UACUA U GAAAG-5'@LB@ | |@LB@ 19 5@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -13.4585 kcal/mol@LB@Unfolding Energy - mRNA 3.04139 kcal/mol@LB@Unfolding Energy - sRNA 1.21878 kcal/mol@LB@@LB@Position - mRNA 90 -- 101@LB@Position - sRNA 6 -- 18@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 6 -- 12@LB@ |
106 |
0.0109 |
0.3104 |
b2510 |
yfgJ |
-10.53 |
0.098521 |
243 -- 261 |
5 -- 21 |
DUF1407 family protein |
|
_____________242_________________262\n_____________|___________________|\n5'-UAA...AUCAG________CC_________GCCGA...UUU-3'\n______________GAUAACGG__AUGCGCGUU\n______________||||||::__||||||||:\n______________CUAUUGUU__UACGCGCAG\n3'-UUU...UACUA___________________AAAG-5'\n_____________|___________________|\n_____________22__________________4\n |
255 -- 261 |
5 -- 11 |
-20.9599 kcal/mol |
9.18032 kcal/mol |
1.24955 kcal/mol |
242 262@LB@ | |@LB@5'-UAA...AUCAG CC GCCGA...UUU-3'@LB@ GAUAACGG AUGCGCGUU@LB@ ||||||:: ||||||||:@LB@ CUAUUGUU UACGCGCAG@LB@3'-UUU...UACUA AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -20.9599 kcal/mol@LB@Unfolding Energy - mRNA 9.18032 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 243 -- 261@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 5 -- 11@LB@ |
58 |
0.00518 |
0.3024 |
b4068 |
yjcH |
-12.19 |
0.050580 |
228 -- 240 |
8 -- 21 |
DUF485 family inner membrane protein |
|
_____________227____________241\n_____________|______________|\n5'-ACC...GGAUA__A___________AUUUC...UGC-3'\n______________GA_GAC_AAUGCGC\n______________||_:||_|||||||\n______________CU_UUG_UUACGCG\n3'-UUU...UACUA__A___U_______CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
234 -- 240 |
8 -- 14 |
-14.481 kcal/mol |
1.05266 kcal/mol |
1.23638 kcal/mol |
227 241@LB@ | |@LB@5'-ACC...GGAUA A AUUUC...UGC-3'@LB@ GA GAC AAUGCGC@LB@ || :|| |||||||@LB@ CU UUG UUACGCG@LB@3'-UUU...UACUA A U CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -12.19 kcal/mol@LB@Hybridization Energy -14.481 kcal/mol@LB@Unfolding Energy - mRNA 1.05266 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 228 -- 240@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 8 -- 14@LB@ |
143 |
0.01362 |
0.3104 |
b3284 |
smg |
-7.50 |
0.302399 |
64 -- 82 |
5 -- 21 |
DUF494 family putative periplasmic protein |
|
_____________63__________________83\n_____________|___________________|\n5'-UUC...GAUGA_______CC__U__A____GUCGC...CAG-3'\n______________GGUAACA__UG_UG_CGUC\n______________|:|||||__||_:|_||||\n______________CUAUUGU__AC_GC_GCAG\n3'-UUU...UACUA_______UU__________AAAG-5'\n_____________|___________________|\n_____________22__________________4\n |
64 -- 70 |
15 -- 21 |
-13.2614 kcal/mol |
4.51132 kcal/mol |
1.24955 kcal/mol |
63 83@LB@ | |@LB@5'-UUC...GAUGA CC U A GUCGC...CAG-3'@LB@ GGUAACA UG UG CGUC@LB@ |:||||| || :| ||||@LB@ CUAUUGU AC GC GCAG@LB@3'-UUU...UACUA UU AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -7.50 kcal/mol@LB@Hybridization Energy -13.2614 kcal/mol@LB@Unfolding Energy - mRNA 4.51132 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 64 -- 82@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 15 -- 21@LB@ |
73 |
0.006809 |
0.3087 |
b4146 |
epmB |
-12.79 |
0.039583 |
278 -- 298 |
1 -- 22 |
EF-P-Lys34 lysylation protein; weak lysine 2 3-aminomutase |
|
_____________277____________________299\n_____________|______________________|\n5'-UUC...GAUCC______ACUUC___________GA-3'\n______________UGAUGA______UGCGUCUUUU\n______________||||:|______:||||||||:\n______________ACUAUU______GCGCAGAAAG\n3'-UUU...CUACU______GUUUAC__________-5'\n_____________|_____________________|\n_____________23____________________1\n |
292 -- 298 |
1 -- 7 |
-16.8007 kcal/mol |
2.75078 kcal/mol |
1.25963 kcal/mol |
277 299@LB@ | |@LB@5'-UUC...GAUCC ACUUC GA-3'@LB@ UGAUGA UGCGUCUUUU@LB@ ||||:| :||||||||:@LB@ ACUAUU GCGCAGAAAG@LB@3'-UUU...CUACU GUUUAC -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -12.79 kcal/mol@LB@Hybridization Energy -16.8007 kcal/mol@LB@Unfolding Energy - mRNA 2.75078 kcal/mol@LB@Unfolding Energy - sRNA 1.25963 kcal/mol@LB@@LB@Position - mRNA 278 -- 298@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 1 -- 7@LB@ |
74 |
0.006875 |
0.3087 |
b2474 |
tmcA |
-10.30 |
0.108021 |
196 -- 222 |
5 -- 31 |
elongator methionine tRNA (ac4C34) acetyltransferase |
|
_____________195____________________________223\n_____________|______________________________|\n5'-GAU...CGGGG_________C___AC____________U__ACACA...UUG-3'\n______________CAGGGAUGG_UGA__UGAC___UGCGC_UC\n______________||||||||:_|||__|:||___|||||_||\n______________GUCCCUACU_ACU__AUUG___ACGCG_AG\n3'-UUU...CUUAA___________________UUU_____C__AAAG-5'\n_____________|______________________________|\n_____________32_____________________________4\n |
198 -- 204 |
23 -- 29 |
-27.934 kcal/mol |
9.88036 kcal/mol |
7.7585 kcal/mol |
195 223@LB@ | |@LB@5'-GAU...CGGGG C AC U ACACA...UUG-3'@LB@ CAGGGAUGG UGA UGAC UGCGC UC@LB@ ||||||||: ||| |:|| ||||| ||@LB@ GUCCCUACU ACU AUUG ACGCG AG@LB@3'-UUU...CUUAA UUU C AAAG-5'@LB@ | |@LB@ 32 4@LB@@LB@@LB@Energy -10.30 kcal/mol@LB@Hybridization Energy -27.934 kcal/mol@LB@Unfolding Energy - mRNA 9.88036 kcal/mol@LB@Unfolding Energy - sRNA 7.7585 kcal/mol@LB@@LB@Position - mRNA 196 -- 222@LB@Position - sRNA 5 -- 31@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 23 -- 29@LB@ |
24 |
0.001508 |
0.1943 |
b0150 |
fhuA |
-11.07 |
0.079438 |
192 -- 210 |
5 -- 21 |
ferrichrome outer membrane transporter |
|
_____________191_________________211\n_____________|___________________|\n5'-GGA...UCAGA____UAC___UG_______CCAAA...CAG-3'\n______________GAUA___CAA__GCGCGUU\n______________||||___|||__||||||:\n______________CUAU___GUU__CGCGCAG\n3'-UUU...UACUA____U_____UA_______AAAG-5'\n_____________|___________________|\n_____________22__________________4\n |
204 -- 210 |
5 -- 11 |
-17.2518 kcal/mol |
4.92886 kcal/mol |
1.24955 kcal/mol |
191 211@LB@ | |@LB@5'-GGA...UCAGA UAC UG CCAAA...CAG-3'@LB@ GAUA CAA GCGCGUU@LB@ |||| ||| ||||||:@LB@ CUAU GUU CGCGCAG@LB@3'-UUU...UACUA U UA AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -11.07 kcal/mol@LB@Hybridization Energy -17.2518 kcal/mol@LB@Unfolding Energy - mRNA 4.92886 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 192 -- 210@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 5 -- 11@LB@ |
45 |
0.00309 |
0.2325 |
b0584 |
fepA |
-13.78 |
0.026215 |
91 -- 106 |
1 -- 17 |
ferrienterobactin outer membrane transporter |
|
_____________90________________107\n_____________|_________________|\n5'-GAA...CAACU___C_____________AGGAU...ACG-3'\n______________GCA__UGCGUGUCUUUC\n______________:||__||||:|||||||\n______________UGU__ACGCGCAGAAAG\n3'-UUU...ACUAU___UU____________-5'\n_____________|________________|\n_____________18_______________1\n |
100 -- 106 |
1 -- 7 |
-21.1338 kcal/mol |
6.10916 kcal/mol |
1.23994 kcal/mol |
90 107@LB@ | |@LB@5'-GAA...CAACU C AGGAU...ACG-3'@LB@ GCA UGCGUGUCUUUC@LB@ :|| ||||:|||||||@LB@ UGU ACGCGCAGAAAG@LB@3'-UUU...ACUAU UU -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -13.78 kcal/mol@LB@Hybridization Energy -21.1338 kcal/mol@LB@Unfolding Energy - mRNA 6.10916 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 91 -- 106@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 1 -- 7@LB@ |
135 |
0.01297 |
0.3104 |
b3409 |
feoB |
-9.25 |
0.161231 |
74 -- 82 |
5 -- 13 |
ferrous iron transporter protein B and GTP-binding protein; membrane protein |
|
_____________73________83\n_____________|_________|\n5'-CCG...AUGUG_________GCUCC...GGG-3'\n______________GUGCGCGUC\n______________:||||||||\n______________UACGCGCAG\n3'-UUU...UUGUU_________AAAG-5'\n_____________|_________|\n_____________14________4\n |
76 -- 82 |
5 -- 11 |
-15.2985 kcal/mol |
4.89519 kcal/mol |
1.15134 kcal/mol |
73 83@LB@ | |@LB@5'-CCG...AUGUG GCUCC...GGG-3'@LB@ GUGCGCGUC@LB@ :||||||||@LB@ UACGCGCAG@LB@3'-UUU...UUGUU AAAG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -15.2985 kcal/mol@LB@Unfolding Energy - mRNA 4.89519 kcal/mol@LB@Unfolding Energy - sRNA 1.15134 kcal/mol@LB@@LB@Position - mRNA 74 -- 82@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 5 -- 11@LB@ |
69 |
0.006491 |
0.3087 |
b3347 |
fkpA |
-11.66 |
0.062814 |
96 -- 113 |
4 -- 22 |
FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) |
|
_____________95__________________114\n_____________|___________________|\n5'-UGG...AUAGA___________________GUAUG...CAG-3'\n______________UGAUAAUAGG_GCGUGUCU\n______________||||||:|::_|||:||||\n______________ACUAUUGUUU_CGCGCAGA\n3'-UUU...CUACU__________A________AAG-5'\n_____________|___________________|\n_____________23__________________3\n |
107 -- 113 |
4 -- 10 |
-21.7718 kcal/mol |
8.85627 kcal/mol |
1.2572 kcal/mol |
95 114@LB@ | |@LB@5'-UGG...AUAGA GUAUG...CAG-3'@LB@ UGAUAAUAGG GCGUGUCU@LB@ ||||||:|:: |||:||||@LB@ ACUAUUGUUU CGCGCAGA@LB@3'-UUU...CUACU A AAG-5'@LB@ | |@LB@ 23 3@LB@@LB@@LB@Energy -11.66 kcal/mol@LB@Hybridization Energy -21.7718 kcal/mol@LB@Unfolding Energy - mRNA 8.85627 kcal/mol@LB@Unfolding Energy - sRNA 1.2572 kcal/mol@LB@@LB@Position - mRNA 96 -- 113@LB@Position - sRNA 4 -- 22@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 4 -- 10@LB@ |
54 |
0.004897 |
0.3024 |
b1949 |
fliQ |
-8.93 |
0.181731 |
208 -- 239 |
7 -- 38 |
flagellar biosynthesis protein |
|
_____________207_______________________________240\n_____________|_________________________________|\n5'-UUC...GACAC__________UC__________G__C__AA___AUGAA...UUA-3'\n______________CUGAA_UCGG__AUGAUGAUGG_GA_UG__GCG\n______________|||||_||:|__||||||||::_:|_||__|||\n______________GACUU_AGUC__UACUACUAUU_UU_AC__CGC\n3'-UUU...GUAGA_____A____CC__________G__U__G____AGAAAG-5'\n_____________|_________________________________|\n_____________39________________________________6\n |
222 -- 228 |
17 -- 23 |
-27.1148 kcal/mol |
8.82457 kcal/mol |
9.35859 kcal/mol |
207 240@LB@ | |@LB@5'-UUC...GACAC UC G C AA AUGAA...UUA-3'@LB@ CUGAA UCGG AUGAUGAUGG GA UG GCG@LB@ ||||| ||:| ||||||||:: :| || |||@LB@ GACUU AGUC UACUACUAUU UU AC CGC@LB@3'-UUU...GUAGA A CC G U G AGAAAG-5'@LB@ | |@LB@ 39 6@LB@@LB@@LB@Energy -8.93 kcal/mol@LB@Hybridization Energy -27.1148 kcal/mol@LB@Unfolding Energy - mRNA 8.82457 kcal/mol@LB@Unfolding Energy - sRNA 9.35859 kcal/mol@LB@@LB@Position - mRNA 208 -- 239@LB@Position - sRNA 7 -- 38@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 17 -- 23@LB@ |
103 |
0.01026 |
0.3104 |
b1083 |
flgL |
-8.46 |
0.215699 |
195 -- 209 |
5 -- 21 |
flagellar hook-filament junction protein |
|
_____________194_______________210\n_____________|_________________|\n5'-UUG...GGGGA______________U__AGUAC...GUA-3'\n______________GAUAA__GAUGCGU_UC\n______________|||||__:|||||:_||\n______________CUAUU__UUACGCG_AG\n3'-UUU...UACUA_____GU_______C__AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
200 -- 206 |
8 -- 14 |
-13.0743 kcal/mol |
3.36074 kcal/mol |
1.24955 kcal/mol |
194 210@LB@ | |@LB@5'-UUG...GGGGA U AGUAC...GUA-3'@LB@ GAUAA GAUGCGU UC@LB@ ||||| :|||||: ||@LB@ CUAUU UUACGCG AG@LB@3'-UUU...UACUA GU C AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -8.46 kcal/mol@LB@Hybridization Energy -13.0743 kcal/mol@LB@Unfolding Energy - mRNA 3.36074 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 195 -- 209@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 8 -- 14@LB@ |
34 |
0.002145 |
0.2094 |
b1939 |
fliG |
-13.29 |
0.032191 |
145 -- 162 |
6 -- 22 |
flagellar motor switching and energizing component |
|
_____________144________________163\n_____________|__________________|\n5'-AGC...AUGUC_________UCC______GGUGG...AAG-3'\n______________UGAUAACGA___GCGCGU\n______________|||||||:|___||||||\n______________ACUAUUGUU___CGCGCA\n3'-UUU...CUACU_________UA_______GAAAG-5'\n_____________|__________________|\n_____________23_________________5\n |
147 -- 153 |
14 -- 20 |
-19.5862 kcal/mol |
5.04831 kcal/mol |
1.24718 kcal/mol |
144 163@LB@ | |@LB@5'-AGC...AUGUC UCC GGUGG...AAG-3'@LB@ UGAUAACGA GCGCGU@LB@ |||||||:| ||||||@LB@ ACUAUUGUU CGCGCA@LB@3'-UUU...CUACU UA GAAAG-5'@LB@ | |@LB@ 23 5@LB@@LB@@LB@Energy -13.29 kcal/mol@LB@Hybridization Energy -19.5862 kcal/mol@LB@Unfolding Energy - mRNA 5.04831 kcal/mol@LB@Unfolding Energy - sRNA 1.24718 kcal/mol@LB@@LB@Position - mRNA 145 -- 162@LB@Position - sRNA 6 -- 22@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 14 -- 20@LB@ |
90 |
0.009145 |
0.3104 |
b1079 |
flgH |
-6.81 |
0.379144 |
179 -- 204 |
10 -- 38 |
flagellar protein of basal-body outer-membrane L ring |
|
_____________178___________________________205\n_____________|_____________________________|\n5'-ACU...GUUUA____U___U____A_________C_____AAAAA...GGG-3'\n______________CUGA_UUU___GA_GAUGAUAGC__AUGC\n______________||||_||:___||_|||||||:|__||||\n______________GACU_AAG___CU_CUACUAUUG__UACG\n3'-UUU...GUAGA____U___UCC__A_________UU____CGCAG...AAG-5'\n_____________|_____________________________|\n_____________39____________________________9\n |
193 -- 199 |
16 -- 22 |
-21.1251 kcal/mol |
4.97135 kcal/mol |
9.34299 kcal/mol |
178 205@LB@ | |@LB@5'-ACU...GUUUA U U A C AAAAA...GGG-3'@LB@ CUGA UUU GA GAUGAUAGC AUGC@LB@ |||| ||: || |||||||:| ||||@LB@ GACU AAG CU CUACUAUUG UACG@LB@3'-UUU...GUAGA U UCC A UU CGCAG...AAG-5'@LB@ | |@LB@ 39 9@LB@@LB@@LB@Energy -6.81 kcal/mol@LB@Hybridization Energy -21.1251 kcal/mol@LB@Unfolding Energy - mRNA 4.97135 kcal/mol@LB@Unfolding Energy - sRNA 9.34299 kcal/mol@LB@@LB@Position - mRNA 179 -- 204@LB@Position - sRNA 10 -- 38@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 16 -- 22@LB@ |
138 |
0.01331 |
0.3104 |
b2897 |
sdhE |
-11.73 |
0.060976 |
261 -- 284 |
1 -- 21 |
flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair |
|
_____________260_______________________285\n_____________|_________________________|\n5'-GUA...AACUC____UUU___UC_____________GAACA...ACA-3'\n______________GAUA___CAA__AUGC_CGUUUUUC\n______________||||___|||__||||_|||:||||\n______________CUAU___GUU__UACG_GCAGAAAG\n3'-UUU...UACUA____U___________C________-5'\n_____________|________________________|\n_____________22_______________________1\n |
278 -- 284 |
1 -- 7 |
-16.4732 kcal/mol |
3.48371 kcal/mol |
1.25763 kcal/mol |
260 285@LB@ | |@LB@5'-GUA...AACUC UUU UC GAACA...ACA-3'@LB@ GAUA CAA AUGC CGUUUUUC@LB@ |||| ||| |||| |||:||||@LB@ CUAU GUU UACG GCAGAAAG@LB@3'-UUU...UACUA U C -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -11.73 kcal/mol@LB@Hybridization Energy -16.4732 kcal/mol@LB@Unfolding Energy - mRNA 3.48371 kcal/mol@LB@Unfolding Energy - sRNA 1.25763 kcal/mol@LB@@LB@Position - mRNA 261 -- 284@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 1 -- 7@LB@ |
111 |
0.01125 |
0.3104 |
b0102 |
zapD |
-10.07 |
0.117779 |
99 -- 113 |
8 -- 22 |
FtsZ stabilizer |
|
_____________98______________114\n_____________|_______________|\n5'-ACC...GUCAU_________CG____ACCGG...CCA-3'\n______________UGAUAAUAA__GCGC\n______________||||||:||__||||\n______________ACUAUUGUU__CGCG\n3'-UUU...CUACU_________UA____CAGAAAG-5'\n_____________|_______________|\n_____________23______________7\n |
101 -- 107 |
14 -- 20 |
-15.8633 kcal/mol |
4.55182 kcal/mol |
1.23838 kcal/mol |
98 114@LB@ | |@LB@5'-ACC...GUCAU CG ACCGG...CCA-3'@LB@ UGAUAAUAA GCGC@LB@ ||||||:|| ||||@LB@ ACUAUUGUU CGCG@LB@3'-UUU...CUACU UA CAGAAAG-5'@LB@ | |@LB@ 23 7@LB@@LB@@LB@Energy -10.07 kcal/mol@LB@Hybridization Energy -15.8633 kcal/mol@LB@Unfolding Energy - mRNA 4.55182 kcal/mol@LB@Unfolding Energy - sRNA 1.23838 kcal/mol@LB@@LB@Position - mRNA 99 -- 113@LB@Position - sRNA 8 -- 22@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 14 -- 20@LB@ |
196 |
0.01921 |
0.3104 |
b2167 |
fruA |
-9.92 |
0.125082 |
150 -- 163 |
5 -- 22 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________149________________164\n_____________|__________________|\n5'-CGC...CGCAA__________________GACUU...AAA-3'\n______________UGAUGGC____GCGCGUC\n______________||||::|____|||||||\n______________ACUAUUG____CGCGCAG\n3'-UUU...CUACU_______UUUA_______AAAG-5'\n_____________|__________________|\n_____________23_________________4\n |
157 -- 163 |
5 -- 11 |
-18.2874 kcal/mol |
7.11819 kcal/mol |
1.25155 kcal/mol |
149 164@LB@ | |@LB@5'-CGC...CGCAA GACUU...AAA-3'@LB@ UGAUGGC GCGCGUC@LB@ ||||::| |||||||@LB@ ACUAUUG CGCGCAG@LB@3'-UUU...CUACU UUUA AAAG-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -18.2874 kcal/mol@LB@Unfolding Energy - mRNA 7.11819 kcal/mol@LB@Unfolding Energy - sRNA 1.25155 kcal/mol@LB@@LB@Position - mRNA 150 -- 163@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 5 -- 11@LB@ |
187 |
0.01837 |
0.3104 |
b2151 |
galS |
-10.59 |
0.096282 |
222 -- 228 |
5 -- 11 |
galactose- and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor |
|
_____________221_____229\n_____________|_______|\n5'-UCU...AUGUA_______AGGCU...GUG-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
222 -- 228 |
5 -- 11 |
-14.6299 kcal/mol |
2.93004 kcal/mol |
1.11145 kcal/mol |
221 229@LB@ | |@LB@5'-UCU...AUGUA AGGCU...GUG-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -14.6299 kcal/mol@LB@Unfolding Energy - mRNA 2.93004 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 222 -- 228@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 5 -- 11@LB@ |
108 |
0.01118 |
0.3104 |
b2565 |
recO |
-9.71 |
0.135448 |
294 -- 300 |
5 -- 11 |
gap repair protein |
|
_____________293____300\n_____________|______|\n5'-GAA...GGCGC_______-3'\n______________GUGCGUC\n______________|:|||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
294 -- 300 |
5 -- 11 |
-11.8762 kcal/mol |
1.05403 kcal/mol |
1.11145 kcal/mol |
293 300@LB@ | |@LB@5'-GAA...GGCGC -3'@LB@ GUGCGUC@LB@ |:|||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -9.71 kcal/mol@LB@Hybridization Energy -11.8762 kcal/mol@LB@Unfolding Energy - mRNA 1.05403 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 294 -- 300@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 5 -- 11@LB@ |
192 |
0.01895 |
0.3104 |
b3333 |
gspL |
-4.89 |
0.645256 |
110 -- 132 |
1 -- 21 |
general secretory pathway component cryptic |
|
_____________109______________________133\n_____________|________________________|\n5'-GAU...CCAGG____________CAUAUU______AACCG...CGC-3'\n______________GAUGGCAAA_GC______UUUUUC\n______________|||::||||_||______|:||||\n______________CUAUUGUUU_CG______AGAAAG\n3'-UUU...UACUA_________A__CGC_________-5'\n_____________|_______________________|\n_____________22______________________1\n |
110 -- 116 |
15 -- 21 |
-12.6455 kcal/mol |
6.50221 kcal/mol |
1.25763 kcal/mol |
109 133@LB@ | |@LB@5'-GAU...CCAGG CAUAUU AACCG...CGC-3'@LB@ GAUGGCAAA GC UUUUUC@LB@ |||::|||| || |:||||@LB@ CUAUUGUUU CG AGAAAG@LB@3'-UUU...UACUA A CGC -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -4.89 kcal/mol@LB@Hybridization Energy -12.6455 kcal/mol@LB@Unfolding Energy - mRNA 6.50221 kcal/mol@LB@Unfolding Energy - sRNA 1.25763 kcal/mol@LB@@LB@Position - mRNA 110 -- 132@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 15 -- 21@LB@ |
140 |
0.01344 |
0.3104 |
b2388 |
glk |
-4.25 |
0.738023 |
201 -- 214 |
10 -- 20 |
glucokinase |
|
_____________200____________215\n_____________|______________|\n5'-CUA...GAAGA_______AGU____AUUAG...AUU-3'\n______________AUGACAA___AUGC\n______________||:||||___||||\n______________UAUUGUU___UACG\n3'-UUU...ACUAC______________CGCAG...AAG-5'\n_____________|______________|\n_____________21_____________9\n |
201 -- 207 |
14 -- 20 |
-8.41213 kcal/mol |
2.93934 kcal/mol |
1.22774 kcal/mol |
200 215@LB@ | |@LB@5'-CUA...GAAGA AGU AUUAG...AUU-3'@LB@ AUGACAA AUGC@LB@ ||:|||| ||||@LB@ UAUUGUU UACG@LB@3'-UUU...ACUAC CGCAG...AAG-5'@LB@ | |@LB@ 21 9@LB@@LB@@LB@Energy -4.25 kcal/mol@LB@Hybridization Energy -8.41213 kcal/mol@LB@Unfolding Energy - mRNA 2.93934 kcal/mol@LB@Unfolding Energy - sRNA 1.22774 kcal/mol@LB@@LB@Position - mRNA 201 -- 214@LB@Position - sRNA 10 -- 20@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 14 -- 20@LB@ |
181 |
0.01793 |
0.3104 |
b1594 |
mlc |
-11.10 |
0.078496 |
11 -- 37 |
1 -- 18 |
glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
|
_____________10__________________________38\n_____________|___________________________|\n5'-AAA...UCAUG______GUCCGGC_______AA_____GUAUU...GUA-3'\n______________AACAAA_______UGCGCGU__CUUUC\n______________||||||_______|||||||__|||||\n______________UUGUUU_______ACGCGCA__GAAAG\n3'-UUU...UACUA___________________________-5'\n_____________|__________________________|\n_____________19_________________________1\n |
24 -- 30 |
6 -- 12 |
-16.8416 kcal/mol |
4.49753 kcal/mol |
1.24077 kcal/mol |
10 38@LB@ | |@LB@5'-AAA...UCAUG GUCCGGC AA GUAUU...GUA-3'@LB@ AACAAA UGCGCGU CUUUC@LB@ |||||| ||||||| |||||@LB@ UUGUUU ACGCGCA GAAAG@LB@3'-UUU...UACUA -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -11.10 kcal/mol@LB@Hybridization Energy -16.8416 kcal/mol@LB@Unfolding Energy - mRNA 4.49753 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 11 -- 37@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 6 -- 12@LB@ |
172 |
0.01719 |
0.3104 |
b0678 |
nagB |
-13.42 |
0.030481 |
5 -- 26 |
1 -- 17 |
glucosamine-6-phosphate deaminase |
|
_____________4______________________27\n_____________|______________________|\n_______5'-UAUC______UAAAC___________GUGAG...GUC-3'\n______________GCAAAU_____GCGUGUCUUUU\n______________:|||||_____|||:||||||:\n______________UGUUUA_____CGCGCAGAAAG\n3'-UUU...ACUAU______________________-5'\n_____________|_____________________|\n_____________18____________________1\n |
20 -- 26 |
1 -- 7 |
-18.2092 kcal/mol |
3.54695 kcal/mol |
1.23994 kcal/mol |
4 27@LB@ | |@LB@ 5'-UAUC UAAAC GUGAG...GUC-3'@LB@ GCAAAU GCGUGUCUUUU@LB@ :||||| |||:||||||:@LB@ UGUUUA CGCGCAGAAAG@LB@3'-UUU...ACUAU -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -13.42 kcal/mol@LB@Hybridization Energy -18.2092 kcal/mol@LB@Unfolding Energy - mRNA 3.54695 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 5 -- 26@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 1 -- 7@LB@ |
148 |
0.01421 |
0.3104 |
b2379 |
alaC |
-8.54 |
0.209762 |
290 -- 297 |
5 -- 12 |
glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase |
|
_____________289______298\n_____________|________|\n5'-UGU...AUGGC________GGC-3'\n______________UGCGCGUC\n______________||||||||\n______________ACGCGCAG\n3'-UUU...UGUUU________AAAG-5'\n_____________|________|\n_____________13_______4\n |
291 -- 297 |
5 -- 11 |
-14.909 kcal/mol |
5.25295 kcal/mol |
1.11508 kcal/mol |
289 298@LB@ | |@LB@5'-UGU...AUGGC GGC-3'@LB@ UGCGCGUC@LB@ ||||||||@LB@ ACGCGCAG@LB@3'-UUU...UGUUU AAAG-5'@LB@ | |@LB@ 13 4@LB@@LB@@LB@Energy -8.54 kcal/mol@LB@Hybridization Energy -14.909 kcal/mol@LB@Unfolding Energy - mRNA 5.25295 kcal/mol@LB@Unfolding Energy - sRNA 1.11508 kcal/mol@LB@@LB@Position - mRNA 290 -- 297@LB@Position - sRNA 5 -- 12@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 5 -- 11@LB@ |
77 |
0.007102 |
0.3087 |
b0832 |
gsiD |
-8.78 |
0.192254 |
77 -- 85 |
7 -- 15 |
glutathione ABC transporter permease |
|
_____________76________86\n_____________|_________|\n5'-UUG...CGUAG_________AUUAC...GAU-3'\n______________AAAUGCGUG\n______________|||||||:|\n______________UUUACGCGC\n3'-UUU...UAUUG_________AGAAAG-5'\n_____________|_________|\n_____________16________6\n |
79 -- 85 |
7 -- 13 |
-12.0627 kcal/mol |
2.10506 kcal/mol |
1.17837 kcal/mol |
76 86@LB@ | |@LB@5'-UUG...CGUAG AUUAC...GAU-3'@LB@ AAAUGCGUG@LB@ |||||||:|@LB@ UUUACGCGC@LB@3'-UUU...UAUUG AGAAAG-5'@LB@ | |@LB@ 16 6@LB@@LB@@LB@Energy -8.78 kcal/mol@LB@Hybridization Energy -12.0627 kcal/mol@LB@Unfolding Energy - mRNA 2.10506 kcal/mol@LB@Unfolding Energy - sRNA 1.17837 kcal/mol@LB@@LB@Position - mRNA 77 -- 85@LB@Position - sRNA 7 -- 15@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 7 -- 13@LB@ |
102 |
0.01008 |
0.3104 |
b3500 |
gor |
-8.16 |
0.240292 |
285 -- 295 |
4 -- 15 |
glutathione oxidoreductase |
|
_____________284__________296\n_____________|____________|\n5'-GGC...GCCAG____________GAUUG-3'\n______________AAAUGUGCG_CU\n______________|||||:|||_||\n______________UUUACGCGC_GA\n3'-UUU...UAUUG_________A__AAG-5'\n_____________|____________|\n_____________16___________3\n |
287 -- 293 |
7 -- 13 |
-12.6909 kcal/mol |
3.32128 kcal/mol |
1.20666 kcal/mol |
284 296@LB@ | |@LB@5'-GGC...GCCAG GAUUG-3'@LB@ AAAUGUGCG CU@LB@ |||||:||| ||@LB@ UUUACGCGC GA@LB@3'-UUU...UAUUG A AAG-5'@LB@ | |@LB@ 16 3@LB@@LB@@LB@Energy -8.16 kcal/mol@LB@Hybridization Energy -12.6909 kcal/mol@LB@Unfolding Energy - mRNA 3.32128 kcal/mol@LB@Unfolding Energy - sRNA 1.20666 kcal/mol@LB@@LB@Position - mRNA 285 -- 295@LB@Position - sRNA 4 -- 15@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 7 -- 13@LB@ |
14 |
0.0004057 |
0.09812 |
b0886 |
cydC |
-15.95 |
0.010534 |
194 -- 211 |
2 -- 21 |
glutathione/cysteine ABC transporter export permease/ATPase |
|
_____________193__________________212\n_____________|____________________|\n5'-GCG...GAGGA___U________________GCUAC...UCG-3'\n______________GAU__UAAAUGCGCG_CUUU\n______________|||__:|||||||||_||||\n______________CUA__GUUUACGCGC_GAAA\n3'-UUU...UACUA___UU__________A____G-5'\n_____________|____________________|\n_____________22___________________1\n |
201 -- 207 |
7 -- 13 |
-19.6155 kcal/mol |
2.41081 kcal/mol |
1.25756 kcal/mol |
193 212@LB@ | |@LB@5'-GCG...GAGGA U GCUAC...UCG-3'@LB@ GAU UAAAUGCGCG CUUU@LB@ ||| :||||||||| ||||@LB@ CUA GUUUACGCGC GAAA@LB@3'-UUU...UACUA UU A G-5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -15.95 kcal/mol@LB@Hybridization Energy -19.6155 kcal/mol@LB@Unfolding Energy - mRNA 2.41081 kcal/mol@LB@Unfolding Energy - sRNA 1.25756 kcal/mol@LB@@LB@Position - mRNA 194 -- 211@LB@Position - sRNA 2 -- 21@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 7 -- 13@LB@ |
166 |
0.01595 |
0.3104 |
b3560 |
glyQ |
-10.24 |
0.110293 |
22 -- 29 |
7 -- 14 |
glycine tRNA synthetase alpha subunit |
|
_____________21_______30\n_____________|________|\n5'-ACA...UAUGA________GUUAU...UGG-3'\n______________AAUGCGCG\n______________||||||||\n______________UUACGCGC\n3'-UUU...AUUGU________AGAAAG-5'\n_____________|________|\n_____________15_______6\n |
23 -- 29 |
7 -- 13 |
-12.7168 kcal/mol |
1.35517 kcal/mol |
1.11978 kcal/mol |
21 30@LB@ | |@LB@5'-ACA...UAUGA GUUAU...UGG-3'@LB@ AAUGCGCG@LB@ ||||||||@LB@ UUACGCGC@LB@3'-UUU...AUUGU AGAAAG-5'@LB@ | |@LB@ 15 6@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -12.7168 kcal/mol@LB@Unfolding Energy - mRNA 1.35517 kcal/mol@LB@Unfolding Energy - sRNA 1.11978 kcal/mol@LB@@LB@Position - mRNA 22 -- 29@LB@Position - sRNA 7 -- 14@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 7 -- 13@LB@ |
43 |
0.003009 |
0.2325 |
b3429 |
glgA |
-8.59 |
0.206361 |
152 -- 163 |
7 -- 22 |
glycogen synthase |
|
_____________151______________164\n_____________|________________|\n5'-GUA...CGUGC________________AAAUG...ACG-3'\n______________UGGUAAC____GCGCG\n______________||:||||____|||||\n______________ACUAUUG____CGCGC\n3'-UUU...CUACU_______UUUA_____AGAAAG-5'\n_____________|________________|\n_____________23_______________6\n |
152 -- 158 |
16 -- 22 |
-13.429 kcal/mol |
3.59934 kcal/mol |
1.24379 kcal/mol |
151 164@LB@ | |@LB@5'-GUA...CGUGC AAAUG...ACG-3'@LB@ UGGUAAC GCGCG@LB@ ||:|||| |||||@LB@ ACUAUUG CGCGC@LB@3'-UUU...CUACU UUUA AGAAAG-5'@LB@ | |@LB@ 23 6@LB@@LB@@LB@Energy -8.59 kcal/mol@LB@Hybridization Energy -13.429 kcal/mol@LB@Unfolding Energy - mRNA 3.59934 kcal/mol@LB@Unfolding Energy - sRNA 1.24379 kcal/mol@LB@@LB@Position - mRNA 152 -- 163@LB@Position - sRNA 7 -- 22@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 16 -- 22@LB@ |
200 |
0.0195 |
0.3104 |
b3183 |
obgE |
-7.01 |
0.355777 |
76 -- 83 |
4 -- 11 |
GTPase involved in cell partioning and DNA repair |
|
_____________75_______84\n_____________|________|\n5'-UUU...UCUCG________GUCGU...GCC-3'\n______________GUGCGUUU\n______________|:||||:|\n______________CGCGCAGA\n3'-UUU...GUUUA________AAG-5'\n_____________|________|\n_____________12_______3\n |
77 -- 83 |
4 -- 10 |
-11.428 kcal/mol |
3.26207 kcal/mol |
1.15639 kcal/mol |
75 84@LB@ | |@LB@5'-UUU...UCUCG GUCGU...GCC-3'@LB@ GUGCGUUU@LB@ |:||||:|@LB@ CGCGCAGA@LB@3'-UUU...GUUUA AAG-5'@LB@ | |@LB@ 12 3@LB@@LB@@LB@Energy -7.01 kcal/mol@LB@Hybridization Energy -11.428 kcal/mol@LB@Unfolding Energy - mRNA 3.26207 kcal/mol@LB@Unfolding Energy - sRNA 1.15639 kcal/mol@LB@@LB@Position - mRNA 76 -- 83@LB@Position - sRNA 4 -- 11@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 4 -- 10@LB@ |
155 |
0.0146 |
0.3104 |
b2614 |
grpE |
-10.46 |
0.101070 |
105 -- 125 |
1 -- 22 |
heat shock protein |
|
_____________104____________________126\n_____________|______________________|\n5'-GAG...AAGAU______________A__GC___CCUUG...CUG-3'\n______________UGAUGACAA_UGUG_GU__UUC\n______________||||:||||_||:|_||__|||\n______________ACUAUUGUU_ACGC_CA__AAG\n3'-UUU...CUACU_________U____G__GA___-5'\n_____________|_____________________|\n_____________23____________________1\n |
107 -- 113 |
14 -- 20 |
-17.1017 kcal/mol |
5.37697 kcal/mol |
1.25963 kcal/mol |
104 126@LB@ | |@LB@5'-GAG...AAGAU A GC CCUUG...CUG-3'@LB@ UGAUGACAA UGUG GU UUC@LB@ ||||:|||| ||:| || |||@LB@ ACUAUUGUU ACGC CA AAG@LB@3'-UUU...CUACU U G GA -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -17.1017 kcal/mol@LB@Unfolding Energy - mRNA 5.37697 kcal/mol@LB@Unfolding Energy - sRNA 1.25963 kcal/mol@LB@@LB@Position - mRNA 105 -- 125@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 14 -- 20@LB@ |
6 |
9.655e-05 |
0.04801 |
b4175 |
hflC |
-9.47 |
0.148653 |
186 -- 211 |
5 -- 32 |
HflB protease modulator specific for phage lambda cII repressor |
|
_____________185____________________________212\n_____________|______________________________|\n5'-UUA...CAGCG_________________________AA___AGUUA...GUU-3'\n______________UCAGGGG_GA__AUAAC_GAUGCGU__GUC\n______________||||||:_||__|||||_:|||||:__|||\n______________AGUCCCU_CU__UAUUG_UUACGCG__CAG\n3'-UUU...ACUUA_______A__AC_____U____________AAAG-5'\n_____________|______________________________|\n_____________33_____________________________4\n |
200 -- 206 |
8 -- 14 |
-26.2754 kcal/mol |
8.97237 kcal/mol |
7.8362 kcal/mol |
185 212@LB@ | |@LB@5'-UUA...CAGCG AA AGUUA...GUU-3'@LB@ UCAGGGG GA AUAAC GAUGCGU GUC@LB@ ||||||: || ||||| :|||||: |||@LB@ AGUCCCU CU UAUUG UUACGCG CAG@LB@3'-UUU...ACUUA A AC U AAAG-5'@LB@ | |@LB@ 33 4@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -26.2754 kcal/mol@LB@Unfolding Energy - mRNA 8.97237 kcal/mol@LB@Unfolding Energy - sRNA 7.8362 kcal/mol@LB@@LB@Position - mRNA 186 -- 211@LB@Position - sRNA 5 -- 32@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 8 -- 14@LB@ |
28 |
0.001743 |
0.2094 |
b2308 |
hisQ |
-15.00 |
0.015715 |
1 -- 16 |
7 -- 21 |
histidine ABC transporter permease |
|
______________1_______________17\n______________|_______________|\n___________5'-_________C______AAGCA...UUG-3'\n______________GAUAACGAA_UGCGCG\n______________||||||:||_||||||\n______________CUAUUGUUU_ACGCGC\n3'-UUU...UACUA________________AGAAAG-5'\n_____________|________________|\n_____________22_______________6\n |
3 -- 9 |
13 -- 19 |
-21.0778 kcal/mol |
4.83206 kcal/mol |
1.24179 kcal/mol |
1 17@LB@ | |@LB@ 5'- C AAGCA...UUG-3'@LB@ GAUAACGAA UGCGCG@LB@ ||||||:|| ||||||@LB@ CUAUUGUUU ACGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -15.00 kcal/mol@LB@Hybridization Energy -21.0778 kcal/mol@LB@Unfolding Energy - mRNA 4.83206 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 1 -- 16@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 13 -- 19@LB@ |
160 |
0.015 |
0.3104 |
b2022 |
hisB |
-11.12 |
0.077869 |
165 -- 171 |
5 -- 11 |
histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase |
|
_____________164_____172\n_____________|_______|\n5'-CAG...AGCCA_______AUUGA...AAC-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
165 -- 171 |
5 -- 11 |
-14.7431 kcal/mol |
2.50821 kcal/mol |
1.11145 kcal/mol |
164 172@LB@ | |@LB@5'-CAG...AGCCA AUUGA...AAC-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -11.12 kcal/mol@LB@Hybridization Energy -14.7431 kcal/mol@LB@Unfolding Energy - mRNA 2.50821 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 165 -- 171@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 5 -- 11@LB@ |
27 |
0.001549 |
0.1943 |
b0440 |
hupB |
-11.81 |
0.059023 |
134 -- 149 |
5 -- 20 |
HU DNA-binding transcriptional regulator beta subunit |
|
_____________133______________150\n_____________|________________|\n5'-CGC...CUGAU_____UGC________CGUAC...CUG-3'\n______________AUAAC___UGCGCGUU\n______________|||||___|||||||:\n______________UAUUG___ACGCGCAG\n3'-UUU...ACUAC_____UUU________AAAG-5'\n_____________|________________|\n_____________21_______________4\n |
143 -- 149 |
5 -- 11 |
-15.9939 kcal/mol |
2.93365 kcal/mol |
1.24804 kcal/mol |
133 150@LB@ | |@LB@5'-CGC...CUGAU UGC CGUAC...CUG-3'@LB@ AUAAC UGCGCGUU@LB@ ||||| |||||||:@LB@ UAUUG ACGCGCAG@LB@3'-UUU...ACUAC UUU AAAG-5'@LB@ | |@LB@ 21 4@LB@@LB@@LB@Energy -11.81 kcal/mol@LB@Hybridization Energy -15.9939 kcal/mol@LB@Unfolding Energy - mRNA 2.93365 kcal/mol@LB@Unfolding Energy - sRNA 1.24804 kcal/mol@LB@@LB@Position - mRNA 134 -- 149@LB@Position - sRNA 5 -- 20@LB@Position Seed - mRNA 143 -- 149@LB@Position Seed - sRNA 5 -- 11@LB@ |
18 |
0.00061 |
0.1147 |
b2126 |
yehU |
-11.17 |
0.076396 |
235 -- 252 |
1 -- 18 |
inner membrane putative sensory kinase in two-component system with YehT |
|
_____________234________________253\n_____________|__________________|\n5'-GUC...GCUUC__________________UAGUC...UAA-3'\n______________AGCAGAUGUGCGUUUUUU\n______________|:||:|||:||||:|||:\n______________UUGUUUACGCGCAGAAAG\n3'-UUU...UACUA__________________-5'\n_____________|_________________|\n_____________19________________1\n |
246 -- 252 |
1 -- 7 |
-22.3117 kcal/mol |
9.89973 kcal/mol |
1.24077 kcal/mol |
234 253@LB@ | |@LB@5'-GUC...GCUUC UAGUC...UAA-3'@LB@ AGCAGAUGUGCGUUUUUU@LB@ |:||:|||:||||:|||:@LB@ UUGUUUACGCGCAGAAAG@LB@3'-UUU...UACUA -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -22.3117 kcal/mol@LB@Unfolding Energy - mRNA 9.89973 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 235 -- 252@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 1 -- 7@LB@ |
158 |
0.01496 |
0.3104 |
b4278 |
insG |
-10.00 |
0.121023 |
32 -- 48 |
3 -- 20 |
IS4 transposase |
|
_____________31_________________49\n_____________|__________________|\n5'-GUU...UCCAC________A_________GUUAC...CUC-3'\n______________AUAACAAA__CGCGUUUU\n______________||||||||__|||||:||\n______________UAUUGUUU__GCGCAGAA\n3'-UUU...ACUAC________AC________AG-5'\n_____________|__________________|\n_____________21_________________2\n |
42 -- 48 |
3 -- 9 |
-15.3953 kcal/mol |
4.13684 kcal/mol |
1.25547 kcal/mol |
31 49@LB@ | |@LB@5'-GUU...UCCAC A GUUAC...CUC-3'@LB@ AUAACAAA CGCGUUUU@LB@ |||||||| |||||:||@LB@ UAUUGUUU GCGCAGAA@LB@3'-UUU...ACUAC AC AG-5'@LB@ | |@LB@ 21 2@LB@@LB@@LB@Energy -10.00 kcal/mol@LB@Hybridization Energy -15.3953 kcal/mol@LB@Unfolding Energy - mRNA 4.13684 kcal/mol@LB@Unfolding Energy - sRNA 1.25547 kcal/mol@LB@@LB@Position - mRNA 32 -- 48@LB@Position - sRNA 3 -- 20@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 3 -- 9@LB@ |
180 |
0.01774 |
0.3104 |
b0593 |
entC |
-14.03 |
0.023631 |
112 -- 128 |
4 -- 19 |
isochorismate synthase 1 |
|
_____________111_______________129\n_____________|_________________|\n5'-GGC...AGAGU_____U___________GCUUU...CAG-3'\n______________UGACA_AGUGCGCGUUU\n______________|:|||_|:|||||||:|\n______________AUUGU_UUACGCGCAGA\n3'-UUU...CUACU_________________AAG-5'\n_____________|_________________|\n_____________20________________3\n |
122 -- 128 |
4 -- 10 |
-18.4725 kcal/mol |
3.19872 kcal/mol |
1.2406 kcal/mol |
111 129@LB@ | |@LB@5'-GGC...AGAGU U GCUUU...CAG-3'@LB@ UGACA AGUGCGCGUUU@LB@ |:||| |:|||||||:|@LB@ AUUGU UUACGCGCAGA@LB@3'-UUU...CUACU AAG-5'@LB@ | |@LB@ 20 3@LB@@LB@@LB@Energy -14.03 kcal/mol@LB@Hybridization Energy -18.4725 kcal/mol@LB@Unfolding Energy - mRNA 3.19872 kcal/mol@LB@Unfolding Energy - sRNA 1.2406 kcal/mol@LB@@LB@Position - mRNA 112 -- 128@LB@Position - sRNA 4 -- 19@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 4 -- 10@LB@ |
121 |
0.01226 |
0.3104 |
b3209 |
elbB |
-12.57 |
0.043302 |
225 -- 240 |
4 -- 18 |
isoprenoid biosynthesis protein with amidotransferase-like domain |
|
_____________224______________241\n_____________|________________|\n5'-GCG...UUCUG__________G_____AUGAC...GUG-3'\n______________AGCGGAUGCG_CGUCU\n______________|:|::|||||_|||||\n______________UUGUUUACGC_GCAGA\n3'-UUU...UACUA________________AAG-5'\n_____________|________________|\n_____________19_______________3\n |
228 -- 234 |
9 -- 15 |
-20.315 kcal/mol |
6.5132 kcal/mol |
1.22995 kcal/mol |
224 241@LB@ | |@LB@5'-GCG...UUCUG G AUGAC...GUG-3'@LB@ AGCGGAUGCG CGUCU@LB@ |:|::||||| |||||@LB@ UUGUUUACGC GCAGA@LB@3'-UUU...UACUA AAG-5'@LB@ | |@LB@ 19 3@LB@@LB@@LB@Energy -12.57 kcal/mol@LB@Hybridization Energy -20.315 kcal/mol@LB@Unfolding Energy - mRNA 6.5132 kcal/mol@LB@Unfolding Energy - sRNA 1.22995 kcal/mol@LB@@LB@Position - mRNA 225 -- 240@LB@Position - sRNA 4 -- 18@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 9 -- 15@LB@ |
67 |
0.006163 |
0.3087 |
b0773 |
ybhB |
-10.36 |
0.105479 |
214 -- 228 |
7 -- 20 |
kinase inhibitor homolog UPF0098 family |
b0545 |
_____________213_____________229\n_____________|_______________|\n5'-UGU...CAUCA_______UC______AUGGC...AUC-3'\n______________GUAACGA__UGCGCG\n______________:||||:|__||||||\n______________UAUUGUU__ACGCGC\n3'-UUU...ACUAC_______U_______AGAAAG-5'\n_____________|_______________|\n_____________21______________6\n |
214 -- 220 |
14 -- 20 |
-16.0436 kcal/mol |
4.44842 kcal/mol |
1.23906 kcal/mol |
213 229@LB@ | |@LB@5'-UGU...CAUCA UC AUGGC...AUC-3'@LB@ GUAACGA UGCGCG@LB@ :||||:| ||||||@LB@ UAUUGUU ACGCGC@LB@3'-UUU...ACUAC U AGAAAG-5'@LB@ | |@LB@ 21 6@LB@@LB@@LB@Energy -10.36 kcal/mol@LB@Hybridization Energy -16.0436 kcal/mol@LB@Unfolding Energy - mRNA 4.44842 kcal/mol@LB@Unfolding Energy - sRNA 1.23906 kcal/mol@LB@@LB@Position - mRNA 214 -- 228@LB@Position - sRNA 7 -- 20@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 14 -- 20@LB@ |
7 |
9.926e-05 |
0.04801 |
b1113 |
ldtC |
-15.69 |
0.011765 |
184 -- 223 |
1 -- 45 |
L D-transpeptidase linking Lpp to murein |
|
_____________183___________________________________________224\n_____________|_____________________________________________|\n5'-CGU...UUAUA______A________UU________________A___________UCGCU...UGC-3'\n______________UUUAUU__UGGAUUU___GGUGAUGAU__CAAA__CGCGUUUUUC\n______________||:||:__||:|||:___|:|||||||__||||__|||||:||||\n______________AAGUAG__ACUUAAG___CUACUACUA__GUUU__GCGCAGAAAG\n3'-UUU...UUUUA______AG_______UCC_________UU____AC__________-5'\n_____________|____________________________________________|\n_____________46___________________________________________1\n |
217 -- 223 |
1 -- 7 |
-33.7876 kcal/mol |
8.63912 kcal/mol |
9.46113 kcal/mol |
183 224@LB@ | |@LB@5'-CGU...UUAUA A UU A UCGCU...UGC-3'@LB@ UUUAUU UGGAUUU GGUGAUGAU CAAA CGCGUUUUUC@LB@ ||:||: ||:|||: |:||||||| |||| |||||:||||@LB@ AAGUAG ACUUAAG CUACUACUA GUUU GCGCAGAAAG@LB@3'-UUU...UUUUA AG UCC UU AC -5'@LB@ | |@LB@ 46 1@LB@@LB@@LB@Energy -15.69 kcal/mol@LB@Hybridization Energy -33.7876 kcal/mol@LB@Unfolding Energy - mRNA 8.63912 kcal/mol@LB@Unfolding Energy - sRNA 9.46113 kcal/mol@LB@@LB@Position - mRNA 184 -- 223@LB@Position - sRNA 1 -- 45@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 1 -- 7@LB@ |
64 |
0.005939 |
0.3087 |
b3237 |
argR |
-9.39 |
0.153279 |
85 -- 104 |
1 -- 19 |
l-arginine-responsive arginine metabolism regulon transcriptional regulator |
|
_____________84____________________105\n_____________|_____________________|\n5'-ACA...AAAUU_______AUCC__________AUAAC...UGC-3'\n______________UGAUAAA____CGC_UCUUUC\n______________|:|:|||____|||_||||||\n______________AUUGUUU____GCG_AGAAAG\n3'-UUU...CUACU_______AC_____C______-5'\n_____________|____________________|\n_____________20___________________1\n |
85 -- 91 |
13 -- 19 |
-12.1021 kcal/mol |
1.46458 kcal/mol |
1.25156 kcal/mol |
84 105@LB@ | |@LB@5'-ACA...AAAUU AUCC AUAAC...UGC-3'@LB@ UGAUAAA CGC UCUUUC@LB@ |:|:||| ||| ||||||@LB@ AUUGUUU GCG AGAAAG@LB@3'-UUU...CUACU AC C -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -9.39 kcal/mol@LB@Hybridization Energy -12.1021 kcal/mol@LB@Unfolding Energy - mRNA 1.46458 kcal/mol@LB@Unfolding Energy - sRNA 1.25156 kcal/mol@LB@@LB@Position - mRNA 85 -- 104@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 13 -- 19@LB@ |
79 |
0.007292 |
0.3087 |
b0063 |
araB |
-12.45 |
0.045578 |
14 -- 28 |
6 -- 20 |
L-ribulokinase |
|
_____________13______________29\n_____________|_______________|\n5'-CGG...AAGCC________AA_____AACAA...GGU-3'\n______________AUGACAAA__CGCGU\n______________||:|||||__|||||\n______________UAUUGUUU__GCGCA\n3'-UUU...ACUAC________AC_____GAAAG-5'\n_____________|_______________|\n_____________21______________5\n |
15 -- 21 |
13 -- 19 |
-14.5023 kcal/mol |
0.813134 kcal/mol |
1.24244 kcal/mol |
13 29@LB@ | |@LB@5'-CGG...AAGCC AA AACAA...GGU-3'@LB@ AUGACAAA CGCGU@LB@ ||:||||| |||||@LB@ UAUUGUUU GCGCA@LB@3'-UUU...ACUAC AC GAAAG-5'@LB@ | |@LB@ 21 5@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -14.5023 kcal/mol@LB@Unfolding Energy - mRNA 0.813134 kcal/mol@LB@Unfolding Energy - sRNA 1.24244 kcal/mol@LB@@LB@Position - mRNA 14 -- 28@LB@Position - sRNA 6 -- 20@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 13 -- 19@LB@ |
94 |
0.009498 |
0.3104 |
b4198 |
ulaF |
-10.74 |
0.090813 |
136 -- 150 |
6 -- 20 |
L-ribulose 5-phosphate 4-epimerase |
|
_____________135_____________151\n_____________|_______________|\n5'-GUC...CAGAA________A______GAUUG...GCG-3'\n______________GUGGCGAA_GCGCGU\n______________:|::|:||_||||||\n______________UAUUGUUU_CGCGCA\n3'-UUU...ACUAC________A______GAAAG-5'\n_____________|_______________|\n_____________21______________5\n |
137 -- 143 |
13 -- 19 |
-18.1084 kcal/mol |
6.12954 kcal/mol |
1.24244 kcal/mol |
135 151@LB@ | |@LB@5'-GUC...CAGAA A GAUUG...GCG-3'@LB@ GUGGCGAA GCGCGU@LB@ :|::|:|| ||||||@LB@ UAUUGUUU CGCGCA@LB@3'-UUU...ACUAC A GAAAG-5'@LB@ | |@LB@ 21 5@LB@@LB@@LB@Energy -10.74 kcal/mol@LB@Hybridization Energy -18.1084 kcal/mol@LB@Unfolding Energy - mRNA 6.12954 kcal/mol@LB@Unfolding Energy - sRNA 1.24244 kcal/mol@LB@@LB@Position - mRNA 136 -- 150@LB@Position - sRNA 6 -- 20@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 13 -- 19@LB@ |
41 |
0.00276 |
0.2279 |
b0889 |
lrp |
-10.49 |
0.100208 |
207 -- 221 |
8 -- 21 |
leucine-responsive global transcriptional regulator |
|
_____________206_____________222\n_____________|_______________|\n5'-GUG...UGGUA_________AA____CCUGG...AGC-3'\n______________GAUAGCAAG__GCGC\n______________||||:|||:__||||\n______________CUAUUGUUU__CGCG\n3'-UUU...UACUA_________A_____CAGAAAG-5'\n_____________|_______________|\n_____________22______________7\n |
209 -- 215 |
13 -- 19 |
-15.2704 kcal/mol |
3.5472 kcal/mol |
1.23638 kcal/mol |
206 222@LB@ | |@LB@5'-GUG...UGGUA AA CCUGG...AGC-3'@LB@ GAUAGCAAG GCGC@LB@ ||||:|||: ||||@LB@ CUAUUGUUU CGCG@LB@3'-UUU...UACUA A CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -15.2704 kcal/mol@LB@Unfolding Energy - mRNA 3.5472 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 207 -- 221@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 13 -- 19@LB@ |
61 |
0.005608 |
0.3084 |
b2174 |
lpxT |
-9.09 |
0.171357 |
170 -- 179 |
1 -- 10 |
lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase |
|
_____________169________180\n_____________|__________|\n5'-GAA...UUGCC__________AGUAA...CGA-3'\n______________UGCGUUUUUC\n______________:||||:||||\n______________GCGCAGAAAG\n3'-UUU...UUUAC__________-5'\n_____________|_________|\n_____________11________1\n |
173 -- 179 |
1 -- 7 |
-13.1644 kcal/mol |
2.90849 kcal/mol |
1.16635 kcal/mol |
169 180@LB@ | |@LB@5'-GAA...UUGCC AGUAA...CGA-3'@LB@ UGCGUUUUUC@LB@ :||||:||||@LB@ GCGCAGAAAG@LB@3'-UUU...UUUAC -5'@LB@ | |@LB@ 11 1@LB@@LB@@LB@Energy -9.09 kcal/mol@LB@Hybridization Energy -13.1644 kcal/mol@LB@Unfolding Energy - mRNA 2.90849 kcal/mol@LB@Unfolding Energy - sRNA 1.16635 kcal/mol@LB@@LB@Position - mRNA 170 -- 179@LB@Position - sRNA 1 -- 10@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 1 -- 7@LB@ |
85 |
0.008151 |
0.3104 |
b0914 |
msbA |
-12.09 |
0.052799 |
181 -- 198 |
1 -- 18 |
lipid ABC transporter permease/ATPase |
|
_____________180________________199\n_____________|__________________|\n5'-AGC...AUUUC_________UG_______GAAUG...CGU-3'\n______________AACAAAUGC__GUUUUUU\n______________|||||||||__||:|||:\n______________UUGUUUACG__CAGAAAG\n3'-UUU...UACUA_________CG_______-5'\n_____________|_________________|\n_____________19________________1\n |
192 -- 198 |
1 -- 7 |
-16.7201 kcal/mol |
3.39277 kcal/mol |
1.24077 kcal/mol |
180 199@LB@ | |@LB@5'-AGC...AUUUC UG GAAUG...CGU-3'@LB@ AACAAAUGC GUUUUUU@LB@ ||||||||| ||:|||:@LB@ UUGUUUACG CAGAAAG@LB@3'-UUU...UACUA CG -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -12.09 kcal/mol@LB@Hybridization Energy -16.7201 kcal/mol@LB@Unfolding Energy - mRNA 3.39277 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 181 -- 198@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 1 -- 7@LB@ |
78 |
0.007118 |
0.3087 |
b1118 |
lolE |
-12.65 |
0.041861 |
19 -- 36 |
6 -- 21 |
lipoprotein-releasing system transmembrane protein |
|
_____________18_________________37\n_____________|__________________|\n5'-CUG...CUACC______CUC_________AACGC...GCA-3'\n______________GGUAAC___GAUGCGCGU\n______________|:||||___:||||||||\n______________CUAUUG___UUACGCGCA\n3'-UUU...UACUA______U___________GAAAG-5'\n_____________|__________________|\n_____________22_________________5\n |
30 -- 36 |
6 -- 12 |
-20.2716 kcal/mol |
6.37224 kcal/mol |
1.24519 kcal/mol |
18 37@LB@ | |@LB@5'-CUG...CUACC CUC AACGC...GCA-3'@LB@ GGUAAC GAUGCGCGU@LB@ |:|||| :||||||||@LB@ CUAUUG UUACGCGCA@LB@3'-UUU...UACUA U GAAAG-5'@LB@ | |@LB@ 22 5@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -20.2716 kcal/mol@LB@Unfolding Energy - mRNA 6.37224 kcal/mol@LB@Unfolding Energy - sRNA 1.24519 kcal/mol@LB@@LB@Position - mRNA 19 -- 36@LB@Position - sRNA 6 -- 21@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 6 -- 12@LB@ |
171 |
0.01687 |
0.3104 |
b1512 |
lsrR |
-11.43 |
0.068975 |
231 -- 262 |
7 -- 31 |
lsr operon transcriptional repressor |
b4295 |
_____________230______________________________263\n_____________|________________________________|\n5'-GCU...CAGAA______AUGUG___A__AG_______C_____GAUCG...AGA-3'\n______________CAGGGA_____UGA_GA__AACAGGU_GCGCG\n______________||||||_____|||_||__||||::|_|||||\n______________GUCCCU_____ACU_CU__UUGUUUA_CGCGC\n3'-UUU...CUUAA______________A__A______________AGAAAG-5'\n_____________|________________________________|\n_____________32_______________________________6\n |
250 -- 256 |
12 -- 18 |
-27.0439 kcal/mol |
7.86672 kcal/mol |
7.75103 kcal/mol |
230 263@LB@ | |@LB@5'-GCU...CAGAA AUGUG A AG C GAUCG...AGA-3'@LB@ CAGGGA UGA GA AACAGGU GCGCG@LB@ |||||| ||| || ||||::| |||||@LB@ GUCCCU ACU CU UUGUUUA CGCGC@LB@3'-UUU...CUUAA A A AGAAAG-5'@LB@ | |@LB@ 32 6@LB@@LB@@LB@Energy -11.43 kcal/mol@LB@Hybridization Energy -27.0439 kcal/mol@LB@Unfolding Energy - mRNA 7.86672 kcal/mol@LB@Unfolding Energy - sRNA 7.75103 kcal/mol@LB@@LB@Position - mRNA 231 -- 262@LB@Position - sRNA 7 -- 31@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 12 -- 18@LB@ |
186 |
0.01836 |
0.3104 |
b3521 |
yhjC |
-9.62 |
0.140197 |
158 -- 166 |
5 -- 13 |
LysR family putative transcriptional regulator |
|
_____________157_______167\n_____________|_________|\n5'-UUU...GCGAU_________ACUGU...UUU-3'\n______________AUGCGCGUU\n______________||||||||:\n______________UACGCGCAG\n3'-UUU...UUGUU_________AAAG-5'\n_____________|_________|\n_____________14________4\n |
160 -- 166 |
5 -- 11 |
-14.2497 kcal/mol |
3.47777 kcal/mol |
1.15134 kcal/mol |
157 167@LB@ | |@LB@5'-UUU...GCGAU ACUGU...UUU-3'@LB@ AUGCGCGUU@LB@ ||||||||:@LB@ UACGCGCAG@LB@3'-UUU...UUGUU AAAG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -9.62 kcal/mol@LB@Hybridization Energy -14.2497 kcal/mol@LB@Unfolding Energy - mRNA 3.47777 kcal/mol@LB@Unfolding Energy - sRNA 1.15134 kcal/mol@LB@@LB@Position - mRNA 158 -- 166@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 5 -- 11@LB@ |
182 |
0.01795 |
0.3104 |
b0403 |
malZ |
-8.22 |
0.235274 |
180 -- 211 |
10 -- 46 |
maltodextrin glucosidase |
|
_____________179_____________________________________212\n_____________|_______________________________________|\n5'-UUU...CAGAU_______A_____________AAUU______U_______AUGGC...AGC-3'\n______________UUUCAUC________CAGGGG____AUGAUG_UAAAUGC\n______________|||||||________|||||:____|||||:_:||||||\n______________AAAGUAG________GUCCCU____UACUAU_GUUUACG\n3'-UUU...GUUUU_______AGACUUAA______AC________U_______CGCAG...AAG-5'\n_____________|_______________________________________|\n_____________47______________________________________9\n |
205 -- 211 |
10 -- 16 |
-25.6812 kcal/mol |
8.00905 kcal/mol |
9.44998 kcal/mol |
179 212@LB@ | |@LB@5'-UUU...CAGAU A AAUU U AUGGC...AGC-3'@LB@ UUUCAUC CAGGGG AUGAUG UAAAUGC@LB@ ||||||| |||||: |||||: :||||||@LB@ AAAGUAG GUCCCU UACUAU GUUUACG@LB@3'-UUU...GUUUU AGACUUAA AC U CGCAG...AAG-5'@LB@ | |@LB@ 47 9@LB@@LB@@LB@Energy -8.22 kcal/mol@LB@Hybridization Energy -25.6812 kcal/mol@LB@Unfolding Energy - mRNA 8.00905 kcal/mol@LB@Unfolding Energy - sRNA 9.44998 kcal/mol@LB@@LB@Position - mRNA 180 -- 211@LB@Position - sRNA 10 -- 46@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 10 -- 16@LB@ |
12 |
0.0003263 |
0.08948 |
b4036 |
lamB |
-12.21 |
0.050157 |
189 -- 218 |
8 -- 32 |
maltose outer membrane porin (maltoporin) |
|
_____________188____________________________219\n_____________|______________________________|\n5'-CGC...AUGAC_____A___A_A________UACUC_____AAACU...GUU-3'\n______________UCAGG_GAU_G_AUGAUGAU_____UGCGC\n______________|||||_|||_|_|||||:|:_____|||||\n______________AGUCC_CUA_C_UACUAUUG_____ACGCG\n3'-UUU...ACUUA____________________UUU_______CAGAAAG-5'\n_____________|______________________________|\n_____________33_____________________________7\n |
202 -- 208 |
16 -- 22 |
-24.7132 kcal/mol |
4.6775 kcal/mol |
7.82314 kcal/mol |
188 219@LB@ | |@LB@5'-CGC...AUGAC A A A UACUC AAACU...GUU-3'@LB@ UCAGG GAU G AUGAUGAU UGCGC@LB@ ||||| ||| | |||||:|: |||||@LB@ AGUCC CUA C UACUAUUG ACGCG@LB@3'-UUU...ACUUA UUU CAGAAAG-5'@LB@ | |@LB@ 33 7@LB@@LB@@LB@Energy -12.21 kcal/mol@LB@Hybridization Energy -24.7132 kcal/mol@LB@Unfolding Energy - mRNA 4.6775 kcal/mol@LB@Unfolding Energy - sRNA 7.82314 kcal/mol@LB@@LB@Position - mRNA 189 -- 218@LB@Position - sRNA 8 -- 32@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 16 -- 22@LB@ |
80 |
0.007305 |
0.3087 |
b2392 |
mntH |
-9.52 |
0.145914 |
200 -- 218 |
5 -- 21 |
manganese/divalent cation transporter |
|
_____________199_________________219\n_____________|___________________|\n5'-GCU...CACAA_________CUAU______GAGAG...UCG-3'\n______________GAUGACGAA____CGCGUU\n______________|||:||:||____|||||:\n______________CUAUUGUUU____GCGCAG\n3'-UUU...UACUA_________AC________AAAG-5'\n_____________|___________________|\n_____________22__________________4\n |
202 -- 208 |
13 -- 19 |
-16.4824 kcal/mol |
5.71706 kcal/mol |
1.24955 kcal/mol |
199 219@LB@ | |@LB@5'-GCU...CACAA CUAU GAGAG...UCG-3'@LB@ GAUGACGAA CGCGUU@LB@ |||:||:|| |||||:@LB@ CUAUUGUUU GCGCAG@LB@3'-UUU...UACUA AC AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -9.52 kcal/mol@LB@Hybridization Energy -16.4824 kcal/mol@LB@Unfolding Energy - mRNA 5.71706 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 200 -- 218@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 13 -- 19@LB@ |
122 |
0.01233 |
0.3104 |
b3599 |
mtlA |
-8.56 |
0.208645 |
247 -- 281 |
4 -- 32 |
mannitol-specific PTS enzyme: IIA IIB and IIC components |
|
_____________246_________________________________282\n_____________|___________________________________|\n5'-GAU...UUUCC____CAAC_________C_____AUCG________AUCGC...UCA-3'\n______________UCAG____AUGGUGAUG_CAAAU____GCGCGUUU\n______________||||____|||:||||:_|||||____||||||:|\n______________AGUC____UACUACUAU_GUUUA____CGCGCAGA\n3'-UUU...ACUUA____CC___________U_________________AAG-5'\n_____________|___________________________________|\n_____________33__________________________________3\n |
275 -- 281 |
4 -- 10 |
-27.4972 kcal/mol |
11.1013 kcal/mol |
7.84022 kcal/mol |
246 282@LB@ | |@LB@5'-GAU...UUUCC CAAC C AUCG AUCGC...UCA-3'@LB@ UCAG AUGGUGAUG CAAAU GCGCGUUU@LB@ |||| |||:||||: ||||| ||||||:|@LB@ AGUC UACUACUAU GUUUA CGCGCAGA@LB@3'-UUU...ACUUA CC U AAG-5'@LB@ | |@LB@ 33 3@LB@@LB@@LB@Energy -8.56 kcal/mol@LB@Hybridization Energy -27.4972 kcal/mol@LB@Unfolding Energy - mRNA 11.1013 kcal/mol@LB@Unfolding Energy - sRNA 7.84022 kcal/mol@LB@@LB@Position - mRNA 247 -- 281@LB@Position - sRNA 4 -- 32@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 4 -- 10@LB@ |
3 |
3.559e-05 |
0.03436 |
b0168 |
map |
-14.62 |
0.018437 |
228 -- 248 |
5 -- 21 |
methionine aminopeptidase |
|
_____________227___________________249\n_____________|_____________________|\n5'-CUU...CAGAA____UCGAAA___________GCUGG...AAC-3'\n______________GAUA______AAAUGCGCGUC\n______________||||______|||||||||||\n______________CUAU______UUUACGCGCAG\n3'-UUU...UACUA____UG_______________AAAG-5'\n_____________|_____________________|\n_____________22____________________4\n |
242 -- 248 |
5 -- 11 |
-19.3611 kcal/mol |
3.48659 kcal/mol |
1.24955 kcal/mol |
227 249@LB@ | |@LB@5'-CUU...CAGAA UCGAAA GCUGG...AAC-3'@LB@ GAUA AAAUGCGCGUC@LB@ |||| |||||||||||@LB@ CUAU UUUACGCGCAG@LB@3'-UUU...UACUA UG AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -14.62 kcal/mol@LB@Hybridization Energy -19.3611 kcal/mol@LB@Unfolding Energy - mRNA 3.48659 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 228 -- 248@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 5 -- 11@LB@ |
174 |
0.01734 |
0.3104 |
b3470 |
tusA |
-9.03 |
0.174990 |
268 -- 281 |
8 -- 22 |
mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase |
|
_____________267_____________282\n_____________|_______________|\n5'-CAU...ACCGG_______________AAAAC...UGC-3'\n______________UGAUGAU_GGUGCGC\n______________||||:|:_::|||||\n______________ACUAUUG_UUACGCG\n3'-UUU...CUACU_______U_______CAGAAAG-5'\n_____________|_______________|\n_____________23______________7\n |
275 -- 281 |
8 -- 14 |
-15.1295 kcal/mol |
4.85785 kcal/mol |
1.23838 kcal/mol |
267 282@LB@ | |@LB@5'-CAU...ACCGG AAAAC...UGC-3'@LB@ UGAUGAU GGUGCGC@LB@ ||||:|: ::|||||@LB@ ACUAUUG UUACGCG@LB@3'-UUU...CUACU U CAGAAAG-5'@LB@ | |@LB@ 23 7@LB@@LB@@LB@Energy -9.03 kcal/mol@LB@Hybridization Energy -15.1295 kcal/mol@LB@Unfolding Energy - mRNA 4.85785 kcal/mol@LB@Unfolding Energy - sRNA 1.23838 kcal/mol@LB@@LB@Position - mRNA 268 -- 281@LB@Position - sRNA 8 -- 22@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 8 -- 14@LB@ |
95 |
0.009629 |
0.3104 |
b0781 |
moaA |
-11.57 |
0.065137 |
257 -- 279 |
1 -- 21 |
molybdopterin biosynthesis protein A |
|
_____________256_____________________280\n_____________|_______________________|\n5'-ACG...CUGUC___U__C_________AA_____GUUGC...CGG-3'\n______________GAU_AC_GAUGUGUGU__CUUUC\n______________|||_||_:|||:|:||__|||||\n______________CUA_UG_UUACGCGCA__GAAAG\n3'-UUU...UACUA___U__U________________-5'\n_____________|______________________|\n_____________22_____________________1\n |
266 -- 272 |
6 -- 12 |
-18.6522 kcal/mol |
5.82624 kcal/mol |
1.25763 kcal/mol |
256 280@LB@ | |@LB@5'-ACG...CUGUC U C AA GUUGC...CGG-3'@LB@ GAU AC GAUGUGUGU CUUUC@LB@ ||| || :|||:|:|| |||||@LB@ CUA UG UUACGCGCA GAAAG@LB@3'-UUU...UACUA U U -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -11.57 kcal/mol@LB@Hybridization Energy -18.6522 kcal/mol@LB@Unfolding Energy - mRNA 5.82624 kcal/mol@LB@Unfolding Energy - sRNA 1.25763 kcal/mol@LB@@LB@Position - mRNA 257 -- 279@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 6 -- 12@LB@ |
71 |
0.006638 |
0.3087 |
b3857 |
mobA |
-12.61 |
0.042607 |
253 -- 264 |
7 -- 18 |
molybdopterin-guanine dinucleotide synthase |
|
_____________252__________265\n_____________|____________|\n5'-UCC...AGCCA________G___GCGUA...AAC-3'\n______________GACGAAUG_GCG\n______________:||:||||_|||\n______________UUGUUUAC_CGC\n3'-UUU...UACUA________G___AGAAAG-5'\n_____________|____________|\n_____________19___________6\n |
254 -- 260 |
11 -- 17 |
-15.9619 kcal/mol |
2.14186 kcal/mol |
1.20891 kcal/mol |
252 265@LB@ | |@LB@5'-UCC...AGCCA G GCGUA...AAC-3'@LB@ GACGAAUG GCG@LB@ :||:|||| |||@LB@ UUGUUUAC CGC@LB@3'-UUU...UACUA G AGAAAG-5'@LB@ | |@LB@ 19 6@LB@@LB@@LB@Energy -12.61 kcal/mol@LB@Hybridization Energy -15.9619 kcal/mol@LB@Unfolding Energy - mRNA 2.14186 kcal/mol@LB@Unfolding Energy - sRNA 1.20891 kcal/mol@LB@@LB@Position - mRNA 253 -- 264@LB@Position - sRNA 7 -- 18@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 11 -- 17@LB@ |
46 |
0.003408 |
0.2484 |
b2518 |
ndk |
-12.77 |
0.039848 |
1 -- 16 |
7 -- 21 |
multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase |
|
______________1_______________17\n______________|_______________|\n___________5'-___________A____GGGCA...AAA-3'\n______________GGUGAUGGAUG_CGUG\n______________|:|:|:::|||_||:|\n______________CUAUUGUUUAC_GCGC\n3'-UUU...UACUA________________AGAAAG-5'\n_____________|________________|\n_____________22_______________6\n |
5 -- 11 |
11 -- 17 |
-16.3595 kcal/mol |
2.34366 kcal/mol |
1.24179 kcal/mol |
1 17@LB@ | |@LB@ 5'- A GGGCA...AAA-3'@LB@ GGUGAUGGAUG CGUG@LB@ |:|:|:::||| ||:|@LB@ CUAUUGUUUAC GCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -12.77 kcal/mol@LB@Hybridization Energy -16.3595 kcal/mol@LB@Unfolding Energy - mRNA 2.34366 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 1 -- 16@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 11 -- 17@LB@ |
26 |
0.001545 |
0.1943 |
b1678 |
ldtE |
-10.42 |
0.102915 |
208 -- 217 |
2 -- 11 |
murein L D-transpeptidase |
|
_____________207________218\n_____________|__________|\n5'-UCU...GAAAC__________GCUUA...GCC-3'\n______________GCGCGUCUUU\n______________||||||||||\n______________CGCGCAGAAA\n3'-UUU...GUUUA__________G-5'\n_____________|__________|\n_____________12_________1\n |
211 -- 217 |
2 -- 8 |
-16.5846 kcal/mol |
4.99595 kcal/mol |
1.16977 kcal/mol |
207 218@LB@ | |@LB@5'-UCU...GAAAC GCUUA...GCC-3'@LB@ GCGCGUCUUU@LB@ ||||||||||@LB@ CGCGCAGAAA@LB@3'-UUU...GUUUA G-5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -10.42 kcal/mol@LB@Hybridization Energy -16.5846 kcal/mol@LB@Unfolding Energy - mRNA 4.99595 kcal/mol@LB@Unfolding Energy - sRNA 1.16977 kcal/mol@LB@@LB@Position - mRNA 208 -- 217@LB@Position - sRNA 2 -- 11@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 2 -- 8@LB@ |
128 |
0.01258 |
0.3104 |
b0677 |
nagA |
-7.18 |
0.336330 |
272 -- 297 |
1 -- 22 |
N-acetylglucosamine-6-phosphate deacetylase |
|
_____________271________________________298\n_____________|__________________________|\n5'-AAC...AUCGC_______CU___UAAAA______G__CGG-3'\n______________UGAUGGC__GAU_____GCGUCU_UC\n______________||||::|__:||_____||||||_||\n______________ACUAUUG__UUA_____CGCAGA_AG\n3'-UUU...CUACU_______U____CG_________A__-5'\n_____________|_________________________|\n_____________23________________________1\n |
272 -- 278 |
16 -- 22 |
-15.3811 kcal/mol |
6.93964 kcal/mol |
1.25963 kcal/mol |
271 298@LB@ | |@LB@5'-AAC...AUCGC CU UAAAA G CGG-3'@LB@ UGAUGGC GAU GCGUCU UC@LB@ ||||::| :|| |||||| ||@LB@ ACUAUUG UUA CGCAGA AG@LB@3'-UUU...CUACU U CG A -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -7.18 kcal/mol@LB@Hybridization Energy -15.3811 kcal/mol@LB@Unfolding Energy - mRNA 6.93964 kcal/mol@LB@Unfolding Energy - sRNA 1.25963 kcal/mol@LB@@LB@Position - mRNA 272 -- 297@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 16 -- 22@LB@ |
25 |
0.001519 |
0.1943 |
b2817 |
amiC |
-17.97 |
0.004427 |
110 -- 131 |
1 -- 21 |
N-acetylmuramoyl-L-alanine amidase |
|
_____________109____________________132\n_____________|______________________|\n5'-AGU...UAUUA__________UA__________GCUAA...UCA-3'\n______________GAUGACAGAU__UGCGUCUUUC\n______________|||:|||:||__:|||||||||\n______________CUAUUGUUUA__GCGCAGAAAG\n3'-UUU...UACUA__________C___________-5'\n_____________|_____________________|\n_____________22____________________1\n |
125 -- 131 |
1 -- 7 |
-25.6931 kcal/mol |
6.46841 kcal/mol |
1.25763 kcal/mol |
109 132@LB@ | |@LB@5'-AGU...UAUUA UA GCUAA...UCA-3'@LB@ GAUGACAGAU UGCGUCUUUC@LB@ |||:|||:|| :|||||||||@LB@ CUAUUGUUUA GCGCAGAAAG@LB@3'-UUU...UACUA C -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -17.97 kcal/mol@LB@Hybridization Energy -25.6931 kcal/mol@LB@Unfolding Energy - mRNA 6.46841 kcal/mol@LB@Unfolding Energy - sRNA 1.25763 kcal/mol@LB@@LB@Position - mRNA 110 -- 131@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 1 -- 7@LB@ |
33 |
0.002096 |
0.2094 |
b0937 |
ssuE |
-11.36 |
0.070700 |
201 -- 209 |
5 -- 13 |
NAD(P)H-dependent FMN reductase |
|
_____________200_______210\n_____________|_________|\n5'-CUG...AGAGU_________AUCAC...AGG-3'\n______________AUGCGUGUC\n______________|||||:|||\n______________UACGCGCAG\n3'-UUU...UUGUU_________AAAG-5'\n_____________|_________|\n_____________14________4\n |
203 -- 209 |
5 -- 11 |
-14.6108 kcal/mol |
2.09491 kcal/mol |
1.15134 kcal/mol |
200 210@LB@ | |@LB@5'-CUG...AGAGU AUCAC...AGG-3'@LB@ AUGCGUGUC@LB@ |||||:|||@LB@ UACGCGCAG@LB@3'-UUU...UUGUU AAAG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -11.36 kcal/mol@LB@Hybridization Energy -14.6108 kcal/mol@LB@Unfolding Energy - mRNA 2.09491 kcal/mol@LB@Unfolding Energy - sRNA 1.15134 kcal/mol@LB@@LB@Position - mRNA 201 -- 209@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 5 -- 11@LB@ |
115 |
0.01182 |
0.3104 |
b3367 |
nirC |
-10.39 |
0.104055 |
218 -- 233 |
4 -- 19 |
nitrite transporter |
|
_____________217______________234\n_____________|________________|\n5'-AUG...ACUAU_____________G__AACGC...UGG-3'\n______________UAAUAAGUGUGCG_CU\n______________|||:||:||:|||_||\n______________AUUGUUUACGCGC_GA\n3'-UUU...CUACU_____________A__AAG-5'\n_____________|________________|\n_____________20_______________3\n |
224 -- 230 |
7 -- 13 |
-17.3607 kcal/mol |
5.72929 kcal/mol |
1.2406 kcal/mol |
217 234@LB@ | |@LB@5'-AUG...ACUAU G AACGC...UGG-3'@LB@ UAAUAAGUGUGCG CU@LB@ |||:||:||:||| ||@LB@ AUUGUUUACGCGC GA@LB@3'-UUU...CUACU A AAG-5'@LB@ | |@LB@ 20 3@LB@@LB@@LB@Energy -10.39 kcal/mol@LB@Hybridization Energy -17.3607 kcal/mol@LB@Unfolding Energy - mRNA 5.72929 kcal/mol@LB@Unfolding Energy - sRNA 1.2406 kcal/mol@LB@@LB@Position - mRNA 218 -- 233@LB@Position - sRNA 4 -- 19@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 7 -- 13@LB@ |
55 |
0.005043 |
0.3024 |
b1625 |
cnu |
-10.91 |
0.084723 |
38 -- 57 |
1 -- 21 |
nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor |
|
_____________37____________________58\n_____________|_____________________|\n5'-UUU...UCAGG_________________AC__UUUUC...AUC-3'\n______________GAUAGUAAA_GCGCGUU__UC\n______________||||::|||_||||||:__||\n______________CUAUUGUUU_CGCGCAG__AG\n3'-UUU...UACUA_________A_______AA__-5'\n_____________|____________________|\n_____________22___________________1\n |
47 -- 53 |
5 -- 11 |
-17.9355 kcal/mol |
5.76636 kcal/mol |
1.25763 kcal/mol |
37 58@LB@ | |@LB@5'-UUU...UCAGG AC UUUUC...AUC-3'@LB@ GAUAGUAAA GCGCGUU UC@LB@ ||||::||| ||||||: ||@LB@ CUAUUGUUU CGCGCAG AG@LB@3'-UUU...UACUA A AA -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -17.9355 kcal/mol@LB@Unfolding Energy - mRNA 5.76636 kcal/mol@LB@Unfolding Energy - sRNA 1.25763 kcal/mol@LB@@LB@Position - mRNA 38 -- 57@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 5 -- 11@LB@ |
127 |
0.01249 |
0.3104 |
b2964 |
nupG |
-12.57 |
0.043346 |
150 -- 164 |
1 -- 16 |
nucleoside transporter |
b2406 |
_____________149______________165\n_____________|________________|\n5'-UCC...ACGGU________________AAACA...UGA-3'\n______________CAAAUGUGC_UUUUUC\n______________||||||:||_|:||||\n______________GUUUACGCG_AGAAAG\n3'-UUU...CUAUU_________C______-5'\n_____________|_______________|\n_____________17______________1\n |
152 -- 158 |
8 -- 14 |
-16.6758 kcal/mol |
2.8679 kcal/mol |
1.23857 kcal/mol |
149 165@LB@ | |@LB@5'-UCC...ACGGU AAACA...UGA-3'@LB@ CAAAUGUGC UUUUUC@LB@ ||||||:|| |:||||@LB@ GUUUACGCG AGAAAG@LB@3'-UUU...CUAUU C -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -12.57 kcal/mol@LB@Hybridization Energy -16.6758 kcal/mol@LB@Unfolding Energy - mRNA 2.8679 kcal/mol@LB@Unfolding Energy - sRNA 1.23857 kcal/mol@LB@@LB@Position - mRNA 150 -- 164@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 8 -- 14@LB@ |
21 |
0.0009524 |
0.1536 |
b0241 |
phoE |
-11.39 |
0.070016 |
174 -- 180 |
5 -- 11 |
outer membrane phosphoporin protein E |
b0929 b2215 b1377 |
_____________173_____181\n_____________|_______|\n5'-AGC...UAUUC_______AAUUA...AUG-3'\n______________GCGCGUU\n______________||||||:\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
174 -- 180 |
5 -- 11 |
-12.879 kcal/mol |
0.378776 kcal/mol |
1.11145 kcal/mol |
173 181@LB@ | |@LB@5'-AGC...UAUUC AAUUA...AUG-3'@LB@ GCGCGUU@LB@ ||||||:@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -12.879 kcal/mol@LB@Unfolding Energy - mRNA 0.378776 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 174 -- 180@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 5 -- 11@LB@ |
16 |
0.0004819 |
0.102 |
b0957 |
ompA |
-13.00 |
0.036257 |
182 -- 195 |
8 -- 22 |
outer membrane protein A (3a;II*;G;d) |
|
_____________181_____________196\n_____________|_______________|\n5'-CUU...UUGGA_______________AAAAA...AAC-3'\n______________UGAUAACGAG_GCGC\n______________|||||||:|:_||||\n______________ACUAUUGUUU_CGCG\n3'-UUU...CUACU__________A____CAGAAAG-5'\n_____________|_______________|\n_____________23______________7\n |
185 -- 191 |
13 -- 19 |
-17.7455 kcal/mol |
3.5039 kcal/mol |
1.23838 kcal/mol |
181 196@LB@ | |@LB@5'-CUU...UUGGA AAAAA...AAC-3'@LB@ UGAUAACGAG GCGC@LB@ |||||||:|: ||||@LB@ ACUAUUGUUU CGCG@LB@3'-UUU...CUACU A CAGAAAG-5'@LB@ | |@LB@ 23 7@LB@@LB@@LB@Energy -13.00 kcal/mol@LB@Hybridization Energy -17.7455 kcal/mol@LB@Unfolding Energy - mRNA 3.5039 kcal/mol@LB@Unfolding Energy - sRNA 1.23838 kcal/mol@LB@@LB@Position - mRNA 182 -- 195@LB@Position - sRNA 8 -- 22@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 13 -- 19@LB@ |
8 |
0.000167 |
0.07068 |
b0814 |
ompX |
-11.11 |
0.078421 |
202 -- 223 |
1 -- 22 |
outer membrane protein X |
|
_____________201____________________224\n_____________|______________________|\n5'-CUG...GGUUA___AAAA__U___A________AGCAC...CAC-3'\n______________UGA____AA_UGC_UGUCUUUC\n______________|||____||_|||_:|||||||\n______________ACU____UU_ACG_GCAGAAAG\n3'-UUU...CUACU___AUUG__U___C________-5'\n_____________|_____________________|\n_____________23____________________1\n |
217 -- 223 |
1 -- 7 |
-15.5509 kcal/mol |
3.18554 kcal/mol |
1.25963 kcal/mol |
201 224@LB@ | |@LB@5'-CUG...GGUUA AAAA U A AGCAC...CAC-3'@LB@ UGA AA UGC UGUCUUUC@LB@ ||| || ||| :|||||||@LB@ ACU UU ACG GCAGAAAG@LB@3'-UUU...CUACU AUUG U C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -11.11 kcal/mol@LB@Hybridization Energy -15.5509 kcal/mol@LB@Unfolding Energy - mRNA 3.18554 kcal/mol@LB@Unfolding Energy - sRNA 1.25963 kcal/mol@LB@@LB@Position - mRNA 202 -- 223@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 1 -- 7@LB@ |
179 |
0.01766 |
0.3104 |
b0377 |
sbmA |
-9.49 |
0.147268 |
6 -- 15 |
3 -- 12 |
peptide antibiotic transporter |
b1496 |
_____________5__________16\n_____________|__________|\n______5'-GAUCC_______G__AAUCC...ACU-3'\n______________UGCGCGU_UU\n______________|||||||_||\n______________ACGCGCA_AA\n3'-UUU...UGUUU_______G__AG-5'\n_____________|__________|\n_____________13_________2\n |
6 -- 12 |
6 -- 12 |
-14.1156 kcal/mol |
3.45883 kcal/mol |
1.16529 kcal/mol |
5 16@LB@ | |@LB@ 5'-GAUCC G AAUCC...ACU-3'@LB@ UGCGCGU UU@LB@ ||||||| ||@LB@ ACGCGCA AA@LB@3'-UUU...UGUUU G AG-5'@LB@ | |@LB@ 13 2@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -14.1156 kcal/mol@LB@Unfolding Energy - mRNA 3.45883 kcal/mol@LB@Unfolding Energy - sRNA 1.16529 kcal/mol@LB@@LB@Position - mRNA 6 -- 15@LB@Position - sRNA 3 -- 12@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 6 -- 12@LB@ |
5 |
7.362e-05 |
0.04801 |
b0741 |
pal |
-13.90 |
0.024968 |
103 -- 115 |
3 -- 16 |
peptidoglycan-associated outer membrane lipoprotein |
|
_____________102____________116\n_____________|______________|\n5'-GGA...CGUUU______________CCGGC...GCG-3'\n______________CAAA_GCGCGUCUU\n______________||||_|||||||||\n______________GUUU_CGCGCAGAA\n3'-UUU...CUAUU____A_________AG-5'\n_____________|______________|\n_____________17_____________2\n |
109 -- 115 |
3 -- 9 |
-18.0761 kcal/mol |
2.94526 kcal/mol |
1.22934 kcal/mol |
102 116@LB@ | |@LB@5'-GGA...CGUUU CCGGC...GCG-3'@LB@ CAAA GCGCGUCUU@LB@ |||| |||||||||@LB@ GUUU CGCGCAGAA@LB@3'-UUU...CUAUU A AG-5'@LB@ | |@LB@ 17 2@LB@@LB@@LB@Energy -13.90 kcal/mol@LB@Hybridization Energy -18.0761 kcal/mol@LB@Unfolding Energy - mRNA 2.94526 kcal/mol@LB@Unfolding Energy - sRNA 1.22934 kcal/mol@LB@@LB@Position - mRNA 103 -- 115@LB@Position - sRNA 3 -- 16@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 3 -- 9@LB@ |
38 |
0.002512 |
0.2224 |
b0436 |
tig |
-7.88 |
0.265562 |
192 -- 204 |
10 -- 21 |
peptidyl-prolyl cis/trans isomerase (trigger factor) |
|
_____________191___________205\n_____________|_____________|\n5'-UAC...UUUGA_______A_____AAGUU...UCA-3'\n______________GGUAACA_GAUGC\n______________|:|||||_:||||\n______________CUAUUGU_UUACG\n3'-UUU...UACUA_____________CGCAG...AAG-5'\n_____________|_____________|\n_____________22____________9\n |
192 -- 198 |
15 -- 21 |
-12.2618 kcal/mol |
3.15229 kcal/mol |
1.23076 kcal/mol |
191 205@LB@ | |@LB@5'-UAC...UUUGA A AAGUU...UCA-3'@LB@ GGUAACA GAUGC@LB@ |:||||| :||||@LB@ CUAUUGU UUACG@LB@3'-UUU...UACUA CGCAG...AAG-5'@LB@ | |@LB@ 22 9@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -12.2618 kcal/mol@LB@Unfolding Energy - mRNA 3.15229 kcal/mol@LB@Unfolding Energy - sRNA 1.23076 kcal/mol@LB@@LB@Position - mRNA 192 -- 204@LB@Position - sRNA 10 -- 21@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 15 -- 21@LB@ |
147 |
0.01411 |
0.3104 |
b0441 |
ppiD |
-10.51 |
0.099467 |
81 -- 98 |
3 -- 21 |
periplasmic folding chaperone has an inactive PPIase domain |
|
_____________80__________________99\n_____________|___________________|\n5'-GUA...UAUUC______UUUC_________GUGGG...ACC-3'\n______________GGUGAC_____UGCGUCUU\n______________|:|:||_____:|||||||\n______________CUAUUG_____GCGCAGAA\n3'-UUU...UACUA______UUUAC________AG-5'\n_____________|___________________|\n_____________22__________________2\n |
92 -- 98 |
3 -- 9 |
-17.0331 kcal/mol |
5.27038 kcal/mol |
1.257 kcal/mol |
80 99@LB@ | |@LB@5'-GUA...UAUUC UUUC GUGGG...ACC-3'@LB@ GGUGAC UGCGUCUU@LB@ |:|:|| :|||||||@LB@ CUAUUG GCGCAGAA@LB@3'-UUU...UACUA UUUAC AG-5'@LB@ | |@LB@ 22 2@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -17.0331 kcal/mol@LB@Unfolding Energy - mRNA 5.27038 kcal/mol@LB@Unfolding Energy - sRNA 1.257 kcal/mol@LB@@LB@Position - mRNA 81 -- 98@LB@Position - sRNA 3 -- 21@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 3 -- 9@LB@ |
104 |
0.01032 |
0.3104 |
b1714 |
pheS |
-13.82 |
0.025875 |
273 -- 287 |
5 -- 21 |
phenylalanine tRNA synthetase alpha subunit |
|
_____________272_______________288\n_____________|_________________|\n5'-UUG...CGUUA_________________GAAUA...GUA-3'\n______________GAUAAU__GUGCGCGUC\n______________|||||:__:||||||||\n______________CUAUUG__UACGCGCAG\n3'-UUU...UACUA______UU_________AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
281 -- 287 |
5 -- 11 |
-20.2911 kcal/mol |
5.22554 kcal/mol |
1.24955 kcal/mol |
272 288@LB@ | |@LB@5'-UUG...CGUUA GAAUA...GUA-3'@LB@ GAUAAU GUGCGCGUC@LB@ |||||: :||||||||@LB@ CUAUUG UACGCGCAG@LB@3'-UUU...UACUA UU AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -13.82 kcal/mol@LB@Hybridization Energy -20.2911 kcal/mol@LB@Unfolding Energy - mRNA 5.22554 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 273 -- 287@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 5 -- 11@LB@ |
132 |
0.01286 |
0.3104 |
b3176 |
glmM |
-8.35 |
0.224806 |
246 -- 258 |
8 -- 20 |
phosphoglucosamine mutase |
|
_____________245___________259\n_____________|_____________|\n5'-GUU...GUCGU____G________CGAUC...CGG-3'\n______________GUAG_GGAUGCGC\n______________:||:_::||||||\n______________UAUU_UUUACGCG\n3'-UUU...ACUAC____G________CAGAAAG-5'\n_____________|_____________|\n_____________21____________7\n |
252 -- 258 |
8 -- 14 |
-14.3134 kcal/mol |
4.73041 kcal/mol |
1.23367 kcal/mol |
245 259@LB@ | |@LB@5'-GUU...GUCGU G CGAUC...CGG-3'@LB@ GUAG GGAUGCGC@LB@ :||: ::||||||@LB@ UAUU UUUACGCG@LB@3'-UUU...ACUAC G CAGAAAG-5'@LB@ | |@LB@ 21 7@LB@@LB@@LB@Energy -8.35 kcal/mol@LB@Hybridization Energy -14.3134 kcal/mol@LB@Unfolding Energy - mRNA 4.73041 kcal/mol@LB@Unfolding Energy - sRNA 1.23367 kcal/mol@LB@@LB@Position - mRNA 246 -- 258@LB@Position - sRNA 8 -- 20@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 8 -- 14@LB@ |
154 |
0.01456 |
0.3104 |
b2048 |
cpsG |
-9.02 |
0.175967 |
42 -- 71 |
4 -- 44 |
phosphomannomutase |
|
_____________41________________________________________72\n_____________|_________________________________________|\n5'-GGG...GGCUC___________GA___________UG_______________CGCGG...GCG-3'\n______________UUAUCUC_GAA_____GGAUGAUG_________GUGCGUUU\n______________|:|||||_|||_____||||||||_________|:||||:|\n______________AGUAGAG_CUU_____CCUACUAC_________CGCGCAGA\n3'-UUU...UUUAA_______A___AAGUC________UAUUGUUUA________AAG-5'\n_____________|_________________________________________|\n_____________45________________________________________3\n |
65 -- 71 |
4 -- 10 |
-28.9111 kcal/mol |
10.4373 kcal/mol |
9.45546 kcal/mol |
41 72@LB@ | |@LB@5'-GGG...GGCUC GA UG CGCGG...GCG-3'@LB@ UUAUCUC GAA GGAUGAUG GUGCGUUU@LB@ |:||||| ||| |||||||| |:||||:|@LB@ AGUAGAG CUU CCUACUAC CGCGCAGA@LB@3'-UUU...UUUAA A AAGUC UAUUGUUUA AAG-5'@LB@ | |@LB@ 45 3@LB@@LB@@LB@Energy -9.02 kcal/mol@LB@Hybridization Energy -28.9111 kcal/mol@LB@Unfolding Energy - mRNA 10.4373 kcal/mol@LB@Unfolding Energy - sRNA 9.45546 kcal/mol@LB@@LB@Position - mRNA 42 -- 71@LB@Position - sRNA 4 -- 44@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 4 -- 10@LB@ |
156 |
0.01464 |
0.3104 |
b4105 |
phnD |
-8.45 |
0.216438 |
196 -- 209 |
4 -- 18 |
phosphonate ABC transporter periplasmic binding protein |
|
_____________195_____________210\n_____________|_______________|\n5'-CCG...AGGAA________AA_____AAGAU...UGA-3'\n______________AACGAAUG__CG_CU\n______________|||:||||__||_||\n______________UUGUUUAC__GC_GA\n3'-UUU...UACUA________GC__A__AAG-5'\n_____________|_______________|\n_____________19______________3\n |
197 -- 203 |
11 -- 17 |
-10.9184 kcal/mol |
1.23392 kcal/mol |
1.22995 kcal/mol |
195 210@LB@ | |@LB@5'-CCG...AGGAA AA AAGAU...UGA-3'@LB@ AACGAAUG CG CU@LB@ |||:|||| || ||@LB@ UUGUUUAC GC GA@LB@3'-UUU...UACUA GC A AAG-5'@LB@ | |@LB@ 19 3@LB@@LB@@LB@Energy -8.45 kcal/mol@LB@Hybridization Energy -10.9184 kcal/mol@LB@Unfolding Energy - mRNA 1.23392 kcal/mol@LB@Unfolding Energy - sRNA 1.22995 kcal/mol@LB@@LB@Position - mRNA 196 -- 209@LB@Position - sRNA 4 -- 18@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 11 -- 17@LB@ |
22 |
0.001004 |
0.1545 |
b0583 |
entD |
-18.10 |
0.004183 |
41 -- 63 |
1 -- 22 |
phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex |
|
_____________40______________________64\n_____________|_______________________|\n5'-AUA...CAGAU__U____A___________G___AUGCC...UGC-3'\n______________UG_UGAC_AAGUGCGCGUC_UUC\n______________||_|:||_||:||||||||_|||\n______________AC_AUUG_UUUACGCGCAG_AAG\n3'-UUU...CUACU__U________________A___-5'\n_____________|______________________|\n_____________23_____________________1\n |
53 -- 59 |
5 -- 11 |
-24.6004 kcal/mol |
5.24265 kcal/mol |
1.25963 kcal/mol |
40 64@LB@ | |@LB@5'-AUA...CAGAU U A G AUGCC...UGC-3'@LB@ UG UGAC AAGUGCGCGUC UUC@LB@ || |:|| ||:|||||||| |||@LB@ AC AUUG UUUACGCGCAG AAG@LB@3'-UUU...CUACU U A -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -18.10 kcal/mol@LB@Hybridization Energy -24.6004 kcal/mol@LB@Unfolding Energy - mRNA 5.24265 kcal/mol@LB@Unfolding Energy - sRNA 1.25963 kcal/mol@LB@@LB@Position - mRNA 41 -- 63@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 5 -- 11@LB@ |
159 |
0.01499 |
0.3104 |
b2476 |
purC |
-11.66 |
0.062723 |
28 -- 49 |
4 -- 22 |
phosphoribosylaminoimidazole-succinocarboxamide synthetase |
|
_____________27_____________________50\n_____________|______________________|\n5'-GGA...UGAUA_____C____AC__________GCAGG...CAG-3'\n______________UGAUA_GCAA__GUGUGCGUCU\n______________|||||_:|||__:||:||||||\n______________ACUAU_UGUU__UACGCGCAGA\n3'-UUU...CUACU______________________AAG-5'\n_____________|______________________|\n_____________23_____________________3\n |
43 -- 49 |
4 -- 10 |
-20.6907 kcal/mol |
7.77162 kcal/mol |
1.2572 kcal/mol |
27 50@LB@ | |@LB@5'-GGA...UGAUA C AC GCAGG...CAG-3'@LB@ UGAUA GCAA GUGUGCGUCU@LB@ ||||| :||| :||:||||||@LB@ ACUAU UGUU UACGCGCAGA@LB@3'-UUU...CUACU AAG-5'@LB@ | |@LB@ 23 3@LB@@LB@@LB@Energy -11.66 kcal/mol@LB@Hybridization Energy -20.6907 kcal/mol@LB@Unfolding Energy - mRNA 7.77162 kcal/mol@LB@Unfolding Energy - sRNA 1.2572 kcal/mol@LB@@LB@Position - mRNA 28 -- 49@LB@Position - sRNA 4 -- 22@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 4 -- 10@LB@ |
131 |
0.01264 |
0.3104 |
b3412 |
bioH |
-11.05 |
0.080071 |
12 -- 32 |
7 -- 31 |
pimeloyl-ACP methyl ester carboxylesterase |
|
_____________11________________________33\n_____________|_________________________|\n5'-GGC...GACCG______A__________________GCGGG...ACG-3'\n______________CAGGGA_GAUGG____GAGUGUGUG\n______________||||||_||||:____:|:||:|:|\n______________GUCCCU_CUACU____UUUACGCGC\n3'-UUU...CUUAA______A_____AUUG_________AGAAAG-5'\n_____________|_________________________|\n_____________32________________________6\n |
26 -- 32 |
7 -- 13 |
-25.3011 kcal/mol |
6.49654 kcal/mol |
7.75103 kcal/mol |
11 33@LB@ | |@LB@5'-GGC...GACCG A GCGGG...ACG-3'@LB@ CAGGGA GAUGG GAGUGUGUG@LB@ |||||| ||||: :|:||:|:|@LB@ GUCCCU CUACU UUUACGCGC@LB@3'-UUU...CUUAA A AUUG AGAAAG-5'@LB@ | |@LB@ 32 6@LB@@LB@@LB@Energy -11.05 kcal/mol@LB@Hybridization Energy -25.3011 kcal/mol@LB@Unfolding Energy - mRNA 6.49654 kcal/mol@LB@Unfolding Energy - sRNA 7.75103 kcal/mol@LB@@LB@Position - mRNA 12 -- 32@LB@Position - sRNA 7 -- 31@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 7 -- 13@LB@ |
185 |
0.01831 |
0.3104 |
b3164 |
pnp |
-7.42 |
0.310961 |
131 -- 137 |
8 -- 14 |
polynucleotide phosphorylase/polyadenylase |
|
_____________130_____138\n_____________|_______|\n5'-AGC...GCGAG_______AGAAG...UUA-3'\n______________GAUGCGC\n______________:||||||\n______________UUACGCG\n3'-UUU...AUUGU_______CAGAAAG-5'\n_____________|_______|\n_____________15______7\n |
131 -- 137 |
8 -- 14 |
-10.1419 kcal/mol |
2.24272 kcal/mol |
0.481462 kcal/mol |
130 138@LB@ | |@LB@5'-AGC...GCGAG AGAAG...UUA-3'@LB@ GAUGCGC@LB@ :||||||@LB@ UUACGCG@LB@3'-UUU...AUUGU CAGAAAG-5'@LB@ | |@LB@ 15 7@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -10.1419 kcal/mol@LB@Unfolding Energy - mRNA 2.24272 kcal/mol@LB@Unfolding Energy - sRNA 0.481462 kcal/mol@LB@@LB@Position - mRNA 131 -- 137@LB@Position - sRNA 8 -- 14@LB@Position Seed - mRNA 131 -- 137@LB@Position Seed - sRNA 8 -- 14@LB@ |
44 |
0.003062 |
0.2325 |
b3847 |
pepQ |
-9.98 |
0.122201 |
144 -- 157 |
8 -- 21 |
proline dipeptidase |
|
_____________143____________158\n_____________|______________|\n5'-UUG...CUCUG_____AC_______UAAGA...UUC-3'\n______________GAUGA__GAUGUGC\n______________|||:|__:|||:||\n______________CUAUU__UUACGCG\n3'-UUU...UACUA_____GU_______CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
151 -- 157 |
8 -- 14 |
-13.3112 kcal/mol |
2.09686 kcal/mol |
1.23638 kcal/mol |
143 158@LB@ | |@LB@5'-UUG...CUCUG AC UAAGA...UUC-3'@LB@ GAUGA GAUGUGC@LB@ |||:| :|||:||@LB@ CUAUU UUACGCG@LB@3'-UUU...UACUA GU CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -9.98 kcal/mol@LB@Hybridization Energy -13.3112 kcal/mol@LB@Unfolding Energy - mRNA 2.09686 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 144 -- 157@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 8 -- 14@LB@ |
97 |
0.009805 |
0.3104 |
b1306 |
pspC |
-10.74 |
0.090670 |
128 -- 139 |
7 -- 18 |
psp operon transcription co-activator |
|
_____________127__________140\n_____________|____________|\n5'-CCG...AGCAA____________AACGU...CGG-3'\n______________AACGGAUGCGCG\n______________|||::|||||||\n______________UUGUUUACGCGC\n3'-UUU...UACUA____________AGAAAG-5'\n_____________|____________|\n_____________19___________6\n |
133 -- 139 |
7 -- 13 |
-18.5075 kcal/mol |
6.55818 kcal/mol |
1.20891 kcal/mol |
127 140@LB@ | |@LB@5'-CCG...AGCAA AACGU...CGG-3'@LB@ AACGGAUGCGCG@LB@ |||::|||||||@LB@ UUGUUUACGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 19 6@LB@@LB@@LB@Energy -10.74 kcal/mol@LB@Hybridization Energy -18.5075 kcal/mol@LB@Unfolding Energy - mRNA 6.55818 kcal/mol@LB@Unfolding Energy - sRNA 1.20891 kcal/mol@LB@@LB@Position - mRNA 128 -- 139@LB@Position - sRNA 7 -- 18@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 7 -- 13@LB@ |
91 |
0.009339 |
0.3104 |
b2562 |
yfhL |
-11.62 |
0.063873 |
146 -- 160 |
6 -- 20 |
putative 4Fe-4S cluster-containing protein |
|
_____________145_____________161\n_____________|_______________|\n5'-AGC...UCUGA____A__________AUAAU...UUA-3'\n______________GUAA_GAAUGCGCGU\n______________:|||_:|||||||||\n______________UAUU_UUUACGCGCA\n3'-UUU...ACUAC____G__________GAAAG-5'\n_____________|_______________|\n_____________21______________5\n |
154 -- 160 |
6 -- 12 |
-16.8242 kcal/mol |
3.96482 kcal/mol |
1.24244 kcal/mol |
145 161@LB@ | |@LB@5'-AGC...UCUGA A AUAAU...UUA-3'@LB@ GUAA GAAUGCGCGU@LB@ :||| :|||||||||@LB@ UAUU UUUACGCGCA@LB@3'-UUU...ACUAC G GAAAG-5'@LB@ | |@LB@ 21 5@LB@@LB@@LB@Energy -11.62 kcal/mol@LB@Hybridization Energy -16.8242 kcal/mol@LB@Unfolding Energy - mRNA 3.96482 kcal/mol@LB@Unfolding Energy - sRNA 1.24244 kcal/mol@LB@@LB@Position - mRNA 146 -- 160@LB@Position - sRNA 6 -- 20@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 6 -- 12@LB@ |
68 |
0.006348 |
0.3087 |
b1202 |
ycgV |
-6.40 |
0.429936 |
233 -- 244 |
4 -- 18 |
putative adhesin |
b2647 |
_____________232_____________245\n_____________|_______________|\n5'-ACU...ACCAA_______________CGCUG...UUG-3'\n______________AGCAGAU___CGUCU\n______________|:||:||___|||||\n______________UUGUUUA___GCAGA\n3'-UUU...UACUA_______CGC_____AAG-5'\n_____________|_______________|\n_____________19______________3\n |
233 -- 239 |
12 -- 18 |
-9.8712 kcal/mol |
2.23703 kcal/mol |
1.22995 kcal/mol |
232 245@LB@ | |@LB@5'-ACU...ACCAA CGCUG...UUG-3'@LB@ AGCAGAU CGUCU@LB@ |:||:|| |||||@LB@ UUGUUUA GCAGA@LB@3'-UUU...UACUA CGC AAG-5'@LB@ | |@LB@ 19 3@LB@@LB@@LB@Energy -6.40 kcal/mol@LB@Hybridization Energy -9.8712 kcal/mol@LB@Unfolding Energy - mRNA 2.23703 kcal/mol@LB@Unfolding Energy - sRNA 1.22995 kcal/mol@LB@@LB@Position - mRNA 233 -- 244@LB@Position - sRNA 4 -- 18@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 12 -- 18@LB@ |
163 |
0.0151 |
0.3104 |
b1517 |
lsrF |
-8.60 |
0.205199 |
166 -- 179 |
8 -- 21 |
putative autoinducer-2 (AI-2) aldolase |
|
_____________165____________180\n_____________|______________|\n5'-AAA...AAUAC___UU_U_______AUUAC...AUU-3'\n______________GAU__C_GAUGUGC\n______________|||__|_:|||:||\n______________CUA__G_UUACGCG\n3'-UUU...UACUA___UU_U_______CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
173 -- 179 |
8 -- 14 |
-12.6785 kcal/mol |
2.84069 kcal/mol |
1.23638 kcal/mol |
165 180@LB@ | |@LB@5'-AAA...AAUAC UU U AUUAC...AUU-3'@LB@ GAU C GAUGUGC@LB@ ||| | :|||:||@LB@ CUA G UUACGCG@LB@3'-UUU...UACUA UU U CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -12.6785 kcal/mol@LB@Unfolding Energy - mRNA 2.84069 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 166 -- 179@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 8 -- 14@LB@ |
36 |
0.002407 |
0.2206 |
b2550 |
yphH |
-13.17 |
0.033778 |
238 -- 251 |
7 -- 20 |
putative DNA-binding transcriptional regulator |
|
_____________237____________252\n_____________|______________|\n5'-AGG...CCACC______________AUUCU...UGG-3'\n______________AUAACAAAUGCGUG\n______________||||||||||||:|\n______________UAUUGUUUACGCGC\n3'-UUU...ACUAC______________AGAAAG-5'\n_____________|______________|\n_____________21_____________6\n |
245 -- 251 |
7 -- 13 |
-19.0929 kcal/mol |
4.67933 kcal/mol |
1.23906 kcal/mol |
237 252@LB@ | |@LB@5'-AGG...CCACC AUUCU...UGG-3'@LB@ AUAACAAAUGCGUG@LB@ ||||||||||||:|@LB@ UAUUGUUUACGCGC@LB@3'-UUU...ACUAC AGAAAG-5'@LB@ | |@LB@ 21 6@LB@@LB@@LB@Energy -13.17 kcal/mol@LB@Hybridization Energy -19.0929 kcal/mol@LB@Unfolding Energy - mRNA 4.67933 kcal/mol@LB@Unfolding Energy - sRNA 1.23906 kcal/mol@LB@@LB@Position - mRNA 238 -- 251@LB@Position - sRNA 7 -- 20@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 7 -- 13@LB@ |
96 |
0.009671 |
0.3104 |
b0941 |
elfG |
-12.70 |
0.041082 |
222 -- 232 |
5 -- 15 |
putative fimbrial-like adhesin protein |
b3145 b0533 |
_____________221_________233\n_____________|___________|\n5'-UUU...GAGAA___________AUUAC...GGC-3'\n______________AAAUGCGUGUC\n______________|||||||:|||\n______________UUUACGCGCAG\n3'-UUU...UAUUG___________AAAG-5'\n_____________|___________|\n_____________16__________4\n |
226 -- 232 |
5 -- 11 |
-17.0283 kcal/mol |
3.13128 kcal/mol |
1.19708 kcal/mol |
221 233@LB@ | |@LB@5'-UUU...GAGAA AUUAC...GGC-3'@LB@ AAAUGCGUGUC@LB@ |||||||:|||@LB@ UUUACGCGCAG@LB@3'-UUU...UAUUG AAAG-5'@LB@ | |@LB@ 16 4@LB@@LB@@LB@Energy -12.70 kcal/mol@LB@Hybridization Energy -17.0283 kcal/mol@LB@Unfolding Energy - mRNA 3.13128 kcal/mol@LB@Unfolding Energy - sRNA 1.19708 kcal/mol@LB@@LB@Position - mRNA 222 -- 232@LB@Position - sRNA 5 -- 15@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 5 -- 11@LB@ |
31 |
0.001974 |
0.2094 |
b1080 |
flgI |
-10.59 |
0.096403 |
87 -- 101 |
7 -- 21 |
putative flagellar basal body protein |
|
_____________86______________102\n_____________|_______________|\n5'-AUU...ACUCA_______________CAUUG...AAA-3'\n______________GGUGGCGGAUGCGCG\n______________|:|::|::|||||||\n______________CUAUUGUUUACGCGC\n3'-UUU...UACUA_______________AGAAAG-5'\n_____________|_______________|\n_____________22______________6\n |
95 -- 101 |
7 -- 13 |
-22.6939 kcal/mol |
10.8668 kcal/mol |
1.24179 kcal/mol |
86 102@LB@ | |@LB@5'-AUU...ACUCA CAUUG...AAA-3'@LB@ GGUGGCGGAUGCGCG@LB@ |:|::|::|||||||@LB@ CUAUUGUUUACGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -22.6939 kcal/mol@LB@Unfolding Energy - mRNA 10.8668 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 87 -- 101@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 7 -- 13@LB@ |
150 |
0.01436 |
0.3104 |
b3951 |
pflD |
-11.87 |
0.057659 |
67 -- 75 |
5 -- 13 |
putative glycine radical domain-containing pyruvate formate-lyase |
b0823 |
_____________66________76\n_____________|_________|\n5'-GAU...CCAUC_________AACAU...AAA-3'\n______________GUGCGCGUC\n______________:||||||||\n______________UACGCGCAG\n3'-UUU...UUGUU_________AAAG-5'\n_____________|_________|\n_____________14________4\n |
69 -- 75 |
5 -- 11 |
-16.8274 kcal/mol |
3.80607 kcal/mol |
1.15134 kcal/mol |
66 76@LB@ | |@LB@5'-GAU...CCAUC AACAU...AAA-3'@LB@ GUGCGCGUC@LB@ :||||||||@LB@ UACGCGCAG@LB@3'-UUU...UUGUU AAAG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -11.87 kcal/mol@LB@Hybridization Energy -16.8274 kcal/mol@LB@Unfolding Energy - mRNA 3.80607 kcal/mol@LB@Unfolding Energy - sRNA 1.15134 kcal/mol@LB@@LB@Position - mRNA 67 -- 75@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 5 -- 11@LB@ |
184 |
0.01824 |
0.3104 |
b2055 |
wcaE |
-6.17 |
0.461247 |
221 -- 230 |
4 -- 12 |
putative glycosyl transferase |
|
_____________220________231\n_____________|__________|\n5'-ACU...AUCAC__U_______CGUAA...GCU-3'\n______________UG_CGCGUUU\n______________||_|||||:|\n______________AC_GCGCAGA\n3'-UUU...UGUUU__________AAG-5'\n_____________|__________|\n_____________13_________3\n |
224 -- 230 |
4 -- 10 |
-10.1102 kcal/mol |
2.78254 kcal/mol |
1.16019 kcal/mol |
220 231@LB@ | |@LB@5'-ACU...AUCAC U CGUAA...GCU-3'@LB@ UG CGCGUUU@LB@ || |||||:|@LB@ AC GCGCAGA@LB@3'-UUU...UGUUU AAG-5'@LB@ | |@LB@ 13 3@LB@@LB@@LB@Energy -6.17 kcal/mol@LB@Hybridization Energy -10.1102 kcal/mol@LB@Unfolding Energy - mRNA 2.78254 kcal/mol@LB@Unfolding Energy - sRNA 1.16019 kcal/mol@LB@@LB@Position - mRNA 221 -- 230@LB@Position - sRNA 4 -- 12@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 4 -- 10@LB@ |
110 |
0.01118 |
0.3104 |
b1726 |
yniB |
-10.98 |
0.082506 |
169 -- 185 |
3 -- 23 |
putative inner membrane protein |
|
_____________168___________________186\n_____________|_____________________|\n5'-AAG...ACUAA_____________________AAUCA...UGA-3'\n______________GUGA_AACGA___CGCGUCUU\n______________:|||_|||:|___||||||||\n______________UACU_UUGUU___GCGCAGAA\n3'-UUU...CCUAC____A_____UAC________AG-5'\n_____________|_____________________|\n_____________24____________________2\n |
179 -- 185 |
3 -- 9 |
-16.6558 kcal/mol |
3.14383 kcal/mol |
2.53367 kcal/mol |
168 186@LB@ | |@LB@5'-AAG...ACUAA AAUCA...UGA-3'@LB@ GUGA AACGA CGCGUCUU@LB@ :||| |||:| ||||||||@LB@ UACU UUGUU GCGCAGAA@LB@3'-UUU...CCUAC A UAC AG-5'@LB@ | |@LB@ 24 2@LB@@LB@@LB@Energy -10.98 kcal/mol@LB@Hybridization Energy -16.6558 kcal/mol@LB@Unfolding Energy - mRNA 3.14383 kcal/mol@LB@Unfolding Energy - sRNA 2.53367 kcal/mol@LB@@LB@Position - mRNA 169 -- 185@LB@Position - sRNA 3 -- 23@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 3 -- 9@LB@ |
11 |
0.0003246 |
0.08948 |
b2299 |
yfcD |
-11.11 |
0.078371 |
283 -- 295 |
5 -- 18 |
putative NUDIX hydrolase |
|
_____________282____________296\n_____________|______________|\n5'-AGA...CCGGG__________G___ACAGU-3'\n______________AACAAAUGCG_G_C\n______________||||||||||_|_|\n______________UUGUUUACGC_C_G\n3'-UUU...UACUA__________G_A_AAAG-5'\n_____________|______________|\n_____________19_____________4\n |
286 -- 292 |
9 -- 15 |
-15.7313 kcal/mol |
3.39963 kcal/mol |
1.2243 kcal/mol |
282 296@LB@ | |@LB@5'-AGA...CCGGG G ACAGU-3'@LB@ AACAAAUGCG G C@LB@ |||||||||| | |@LB@ UUGUUUACGC C G@LB@3'-UUU...UACUA G A AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -11.11 kcal/mol@LB@Hybridization Energy -15.7313 kcal/mol@LB@Unfolding Energy - mRNA 3.39963 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 283 -- 295@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 9 -- 15@LB@ |
190 |
0.01867 |
0.3104 |
b0196 |
rcsF |
-10.27 |
0.109081 |
201 -- 211 |
2 -- 13 |
putative outer membrane protein |
|
_____________200__________212\n_____________|____________|\n5'-AAU...AUACU____________ACCGA...AGC-3'\n______________AUGCGUG_CUUU\n______________|||||:|_||||\n______________UACGCGC_GAAA\n3'-UUU...UUGUU_______A____G-5'\n_____________|____________|\n_____________14___________1\n |
201 -- 207 |
7 -- 13 |
-12.8527 kcal/mol |
1.40833 kcal/mol |
1.17421 kcal/mol |
200 212@LB@ | |@LB@5'-AAU...AUACU ACCGA...AGC-3'@LB@ AUGCGUG CUUU@LB@ |||||:| ||||@LB@ UACGCGC GAAA@LB@3'-UUU...UUGUU A G-5'@LB@ | |@LB@ 14 1@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -12.8527 kcal/mol@LB@Unfolding Energy - mRNA 1.40833 kcal/mol@LB@Unfolding Energy - sRNA 1.17421 kcal/mol@LB@@LB@Position - mRNA 201 -- 211@LB@Position - sRNA 2 -- 13@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 7 -- 13@LB@ |
117 |
0.01191 |
0.3104 |
b2137 |
yohF |
-11.08 |
0.079147 |
231 -- 259 |
5 -- 35 |
putative oxidoreductase |
|
_____________230_____________________________260\n_____________|_______________________________|\n5'-UAA...CCUCC___________C____CAAA___________AUUAC...GGC-3'\n______________GAUUCGGGGAU___GG____GAGUGCGCGUU\n______________:||||:|||||___|:____:|:|||||||:\n______________UUAAGUCCCUA___CU____UUUACGCGCAG\n3'-UUU...GAGAC___________CUA__AUUG___________AAAG-5'\n_____________|_______________________________|\n_____________36______________________________4\n |
253 -- 259 |
5 -- 11 |
-31.497 kcal/mol |
11.2631 kcal/mol |
9.15134 kcal/mol |
230 260@LB@ | |@LB@5'-UAA...CCUCC C CAAA AUUAC...GGC-3'@LB@ GAUUCGGGGAU GG GAGUGCGCGUU@LB@ :||||:||||| |: :|:|||||||:@LB@ UUAAGUCCCUA CU UUUACGCGCAG@LB@3'-UUU...GAGAC CUA AUUG AAAG-5'@LB@ | |@LB@ 36 4@LB@@LB@@LB@Energy -11.08 kcal/mol@LB@Hybridization Energy -31.497 kcal/mol@LB@Unfolding Energy - mRNA 11.2631 kcal/mol@LB@Unfolding Energy - sRNA 9.15134 kcal/mol@LB@@LB@Position - mRNA 231 -- 259@LB@Position - sRNA 5 -- 35@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 5 -- 11@LB@ |
126 |
0.01241 |
0.3104 |
b4379 |
yjjW |
-11.82 |
0.058804 |
207 -- 217 |
8 -- 18 |
putative pyruvate formate lyase activating enzyme |
|
_____________206_________218\n_____________|___________|\n5'-CGG...UGAAC___________UUUAG...UGC-3'\n______________AGCAGAUGCGC\n______________|:||:||||||\n______________UUGUUUACGCG\n3'-UUU...UACUA___________CAGAAAG-5'\n_____________|___________|\n_____________19__________7\n |
211 -- 217 |
8 -- 14 |
-16.9543 kcal/mol |
3.92931 kcal/mol |
1.20363 kcal/mol |
206 218@LB@ | |@LB@5'-CGG...UGAAC UUUAG...UGC-3'@LB@ AGCAGAUGCGC@LB@ |:||:||||||@LB@ UUGUUUACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 19 7@LB@@LB@@LB@Energy -11.82 kcal/mol@LB@Hybridization Energy -16.9543 kcal/mol@LB@Unfolding Energy - mRNA 3.92931 kcal/mol@LB@Unfolding Energy - sRNA 1.20363 kcal/mol@LB@@LB@Position - mRNA 207 -- 217@LB@Position - sRNA 8 -- 18@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 8 -- 14@LB@ |
175 |
0.01743 |
0.3104 |
b0921 |
smtA |
-12.81 |
0.039244 |
146 -- 164 |
2 -- 20 |
putative S-adenosyl-L-methionine-dependent methyltransferase |
|
_____________145_________________165\n_____________|___________________|\n5'-AUC...UGGCU________AUA________AUCAG...AUC-3'\n______________GUGACAAA___GCGUCUUU\n______________:|:|||||___||||||||\n______________UAUUGUUU___CGCAGAAA\n3'-UUU...ACUAC________ACG________G-5'\n_____________|___________________|\n_____________21__________________1\n |
158 -- 164 |
2 -- 8 |
-18.7664 kcal/mol |
4.69909 kcal/mol |
1.25604 kcal/mol |
145 165@LB@ | |@LB@5'-AUC...UGGCU AUA AUCAG...AUC-3'@LB@ GUGACAAA GCGUCUUU@LB@ :|:||||| ||||||||@LB@ UAUUGUUU CGCAGAAA@LB@3'-UUU...ACUAC ACG G-5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -12.81 kcal/mol@LB@Hybridization Energy -18.7664 kcal/mol@LB@Unfolding Energy - mRNA 4.69909 kcal/mol@LB@Unfolding Energy - sRNA 1.25604 kcal/mol@LB@@LB@Position - mRNA 146 -- 164@LB@Position - sRNA 2 -- 20@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 2 -- 8@LB@ |
32 |
0.001981 |
0.2094 |
b3110 |
yhaO |
-10.61 |
0.095420 |
268 -- 283 |
7 -- 23 |
putative transporter |
|
_____________267_______________284\n_____________|_________________|\n5'-AAU...AAUGA____G____________AGAAG...UCG-3'\n______________GUGA_AGCGAGUG_GCG\n______________:|||_|:|:|:||_|||\n______________UACU_UUGUUUAC_CGC\n3'-UUU...CCUAC____A________G___AGAAAG-5'\n_____________|_________________|\n_____________24________________6\n |
274 -- 280 |
11 -- 17 |
-15.5882 kcal/mol |
2.45682 kcal/mol |
2.52012 kcal/mol |
267 284@LB@ | |@LB@5'-AAU...AAUGA G AGAAG...UCG-3'@LB@ GUGA AGCGAGUG GCG@LB@ :||| |:|:|:|| |||@LB@ UACU UUGUUUAC CGC@LB@3'-UUU...CCUAC A G AGAAAG-5'@LB@ | |@LB@ 24 6@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -15.5882 kcal/mol@LB@Unfolding Energy - mRNA 2.45682 kcal/mol@LB@Unfolding Energy - sRNA 2.52012 kcal/mol@LB@@LB@Position - mRNA 268 -- 283@LB@Position - sRNA 7 -- 23@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 11 -- 17@LB@ |
188 |
0.0185 |
0.3104 |
b3364 |
tsgA |
-7.52 |
0.300608 |
282 -- 299 |
12 -- 29 |
putative transporter |
|
_____________281________________300\n_____________|__________________|\n5'-CCA...UCACC_____________G____A-3'\n______________GGGAUGGUGAUGG_AAAU\n______________||||||:||||::_||||\n______________CCCUACUACUAUU_UUUA\n3'-UUU...UAAGU_____________G____CGCGC...AAG-5'\n_____________|__________________|\n_____________30_________________11\n |
282 -- 288 |
23 -- 29 |
-23.3156 kcal/mol |
8.39977 kcal/mol |
7.39774 kcal/mol |
281 300@LB@ | |@LB@5'-CCA...UCACC G A-3'@LB@ GGGAUGGUGAUGG AAAU@LB@ ||||||:||||:: ||||@LB@ CCCUACUACUAUU UUUA@LB@3'-UUU...UAAGU G CGCGC...AAG-5'@LB@ | |@LB@ 30 11@LB@@LB@@LB@Energy -7.52 kcal/mol@LB@Hybridization Energy -23.3156 kcal/mol@LB@Unfolding Energy - mRNA 8.39977 kcal/mol@LB@Unfolding Energy - sRNA 7.39774 kcal/mol@LB@@LB@Position - mRNA 282 -- 299@LB@Position - sRNA 12 -- 29@LB@Position Seed - mRNA 282 -- 288@LB@Position Seed - sRNA 23 -- 29@LB@ |
199 |
0.01944 |
0.3104 |
b3657 |
yicJ |
-13.22 |
0.033173 |
129 -- 161 |
8 -- 45 |
putative transporter |
|
_____________128_____________________________________162\n_____________|_______________________________________|\n5'-CAG...GAAUA_________CA_____________UU____A________UAUCG...UGU-3'\n______________UUCG_CUCU_____CAGGGAUGGU____AC_AAAUGCGU\n______________|||:_||||_____||||||||:|____||_|||||||:\n______________AAGU_GAGA_____GUCCCUACUA____UG_UUUACGCG\n3'-UUU...UUUUA____A____CUUAA__________CUAU___________CAGAAAG-5'\n_____________|_______________________________________|\n_____________46______________________________________7\n |
155 -- 161 |
8 -- 14 |
-30.3918 kcal/mol |
7.7216 kcal/mol |
9.45195 kcal/mol |
128 162@LB@ | |@LB@5'-CAG...GAAUA CA UU A UAUCG...UGU-3'@LB@ UUCG CUCU CAGGGAUGGU AC AAAUGCGU@LB@ |||: |||| ||||||||:| || |||||||:@LB@ AAGU GAGA GUCCCUACUA UG UUUACGCG@LB@3'-UUU...UUUUA A CUUAA CUAU CAGAAAG-5'@LB@ | |@LB@ 46 7@LB@@LB@@LB@Energy -13.22 kcal/mol@LB@Hybridization Energy -30.3918 kcal/mol@LB@Unfolding Energy - mRNA 7.7216 kcal/mol@LB@Unfolding Energy - sRNA 9.45195 kcal/mol@LB@@LB@Position - mRNA 129 -- 161@LB@Position - sRNA 8 -- 45@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 8 -- 14@LB@ |
42 |
0.002847 |
0.2296 |
b1638 |
pdxH |
-9.07 |
0.172497 |
29 -- 35 |
5 -- 11 |
pyridoxine 5'-phosphate oxidase |
|
_____________28______36\n_____________|_______|\n5'-UCU...CUGGC_______ACACU...CCC-3'\n______________GCGCGUU\n______________||||||:\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
29 -- 35 |
5 -- 11 |
-12.2635 kcal/mol |
2.08033 kcal/mol |
1.11145 kcal/mol |
28 36@LB@ | |@LB@5'-UCU...CUGGC ACACU...CCC-3'@LB@ GCGCGUU@LB@ ||||||:@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -9.07 kcal/mol@LB@Hybridization Energy -12.2635 kcal/mol@LB@Unfolding Energy - mRNA 2.08033 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 29 -- 35@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 5 -- 11@LB@ |
162 |
0.01506 |
0.3104 |
b0871 |
poxB |
-6.02 |
0.481603 |
228 -- 255 |
23 -- 53 |
pyruvate dehydrogenase thiamine triphosphate-binding FAD-binding |
|
_____________227_______________________________256\n_____________|_________________________________|\n5'-CCG...AUAUC_____________________CGG_________AACGC...GUG-3'\n______________GCCAAAA___CA_CUC_GAAU___CAGGGGUGA\n______________|||||||___||_|||_||||___|||||:|||\n______________CGGUUUU___GU_GAG_CUUA___GUCCCUACU\n3'-UUU...CUCAC_______AAA__A___A____A___________ACUAU...AAG-5'\n_____________|_________________________________|\n_____________54________________________________22\n |
249 -- 255 |
23 -- 29 |
-28.0165 kcal/mol |
6.84512 kcal/mol |
15.1535 kcal/mol |
227 256@LB@ | |@LB@5'-CCG...AUAUC CGG AACGC...GUG-3'@LB@ GCCAAAA CA CUC GAAU CAGGGGUGA@LB@ ||||||| || ||| |||| |||||:|||@LB@ CGGUUUU GU GAG CUUA GUCCCUACU@LB@3'-UUU...CUCAC AAA A A A ACUAU...AAG-5'@LB@ | |@LB@ 54 22@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -28.0165 kcal/mol@LB@Unfolding Energy - mRNA 6.84512 kcal/mol@LB@Unfolding Energy - sRNA 15.1535 kcal/mol@LB@@LB@Position - mRNA 228 -- 255@LB@Position - sRNA 23 -- 53@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 23 -- 29@LB@ |
129 |
0.01261 |
0.3104 |
b3025 |
qseB |
-10.92 |
0.084347 |
141 -- 152 |
5 -- 17 |
quorum sensing DNA-binding response regulator in two-component regulatory system with QseC |
|
_____________140___________153\n_____________|_____________|\n5'-GUG...GCUGU_____________ACAAC...GUC-3'\n______________ACAGA_GCGCGUU\n______________|||:|_||||||:\n______________UGUUU_CGCGCAG\n3'-UUU...ACUAU_____A_______AAAG-5'\n_____________|_____________|\n_____________18____________4\n |
146 -- 152 |
5 -- 11 |
-15.7823 kcal/mol |
3.63703 kcal/mol |
1.22241 kcal/mol |
140 153@LB@ | |@LB@5'-GUG...GCUGU ACAAC...GUC-3'@LB@ ACAGA GCGCGUU@LB@ |||:| ||||||:@LB@ UGUUU CGCGCAG@LB@3'-UUU...ACUAU A AAAG-5'@LB@ | |@LB@ 18 4@LB@@LB@@LB@Energy -10.92 kcal/mol@LB@Hybridization Energy -15.7823 kcal/mol@LB@Unfolding Energy - mRNA 3.63703 kcal/mol@LB@Unfolding Energy - sRNA 1.22241 kcal/mol@LB@@LB@Position - mRNA 141 -- 152@LB@Position - sRNA 5 -- 17@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 5 -- 11@LB@ |
123 |
0.01235 |
0.3104 |
b0097 |
secM |
-7.65 |
0.286972 |
189 -- 203 |
7 -- 21 |
regulator of secA translation |
|
_____________188_____________204\n_____________|_______________|\n5'-UGG...AUCGG________UAA____AGUGG...CGC-3'\n______________GAUGGCAA___CGUG\n______________|||::|||___||:|\n______________CUAUUGUU___GCGC\n3'-UUU...UACUA________UAC____AGAAAG-5'\n_____________|_______________|\n_____________22______________6\n |
190 -- 196 |
14 -- 20 |
-12.5088 kcal/mol |
3.61266 kcal/mol |
1.24179 kcal/mol |
188 204@LB@ | |@LB@5'-UGG...AUCGG UAA AGUGG...CGC-3'@LB@ GAUGGCAA CGUG@LB@ |||::||| ||:|@LB@ CUAUUGUU GCGC@LB@3'-UUU...UACUA UAC AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -7.65 kcal/mol@LB@Hybridization Energy -12.5088 kcal/mol@LB@Unfolding Energy - mRNA 3.61266 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 189 -- 203@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 14 -- 20@LB@ |
194 |
0.0191 |
0.3104 |
b2698 |
recX |
-10.17 |
0.113250 |
93 -- 107 |
8 -- 22 |
regulatory protein for RecA |
|
_____________92______________108\n_____________|_______________|\n5'-AAA...GUAGA__________G____AGCAG...GAC-3'\n______________UGAUAGCGAA_GCGU\n______________|||||:|:||_|||:\n______________ACUAUUGUUU_CGCG\n3'-UUU...CUACU__________A____CAGAAAG-5'\n_____________|_______________|\n_____________23______________7\n |
96 -- 102 |
13 -- 19 |
-16.2974 kcal/mol |
4.88496 kcal/mol |
1.23838 kcal/mol |
92 108@LB@ | |@LB@5'-AAA...GUAGA G AGCAG...GAC-3'@LB@ UGAUAGCGAA GCGU@LB@ |||||:|:|| |||:@LB@ ACUAUUGUUU CGCG@LB@3'-UUU...CUACU A CAGAAAG-5'@LB@ | |@LB@ 23 7@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -16.2974 kcal/mol@LB@Unfolding Energy - mRNA 4.88496 kcal/mol@LB@Unfolding Energy - sRNA 1.23838 kcal/mol@LB@@LB@Position - mRNA 93 -- 107@LB@Position - sRNA 8 -- 22@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 13 -- 19@LB@ |
17 |
0.0005644 |
0.1124 |
b0949 |
uup |
-13.14 |
0.034258 |
282 -- 297 |
4 -- 21 |
replication regulatory ABC-F family DNA-binding ATPase |
|
_____________281________________298\n_____________|__________________|\n5'-GAU...UCGAA__________________GUC-3'\n______________GAUAACGAA__CGUGUUU\n______________||||||:||__||:||:|\n______________CUAUUGUUU__GCGCAGA\n3'-UUU...UACUA_________AC_______AAG-5'\n_____________|__________________|\n_____________22_________________3\n |
291 -- 297 |
4 -- 10 |
-16.3224 kcal/mol |
1.92683 kcal/mol |
1.2552 kcal/mol |
281 298@LB@ | |@LB@5'-GAU...UCGAA GUC-3'@LB@ GAUAACGAA CGUGUUU@LB@ ||||||:|| ||:||:|@LB@ CUAUUGUUU GCGCAGA@LB@3'-UUU...UACUA AC AAG-5'@LB@ | |@LB@ 22 3@LB@@LB@@LB@Energy -13.14 kcal/mol@LB@Hybridization Energy -16.3224 kcal/mol@LB@Unfolding Energy - mRNA 1.92683 kcal/mol@LB@Unfolding Energy - sRNA 1.2552 kcal/mol@LB@@LB@Position - mRNA 282 -- 297@LB@Position - sRNA 4 -- 21@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 4 -- 10@LB@ |
164 |
0.0157 |
0.3104 |
b1735 |
chbR |
-6.99 |
0.357617 |
139 -- 145 |
6 -- 12 |
repressor of chb operon for N N'-diacetylchitobiose utilization |
|
_____________138_____146\n_____________|_______|\n5'-GAU...AUGCU_______GAACU...CUG-3'\n______________UGCGCGU\n______________|||||||\n______________ACGCGCA\n3'-UUU...UGUUU_______GAAAG-5'\n_____________|_______|\n_____________13______5\n |
139 -- 145 |
6 -- 12 |
-12.5358 kcal/mol |
4.43858 kcal/mol |
1.10371 kcal/mol |
138 146@LB@ | |@LB@5'-GAU...AUGCU GAACU...CUG-3'@LB@ UGCGCGU@LB@ |||||||@LB@ ACGCGCA@LB@3'-UUU...UGUUU GAAAG-5'@LB@ | |@LB@ 13 5@LB@@LB@@LB@Energy -6.99 kcal/mol@LB@Hybridization Energy -12.5358 kcal/mol@LB@Unfolding Energy - mRNA 4.43858 kcal/mol@LB@Unfolding Energy - sRNA 1.10371 kcal/mol@LB@@LB@Position - mRNA 139 -- 145@LB@Position - sRNA 6 -- 12@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 6 -- 12@LB@ |
99 |
0.009943 |
0.3104 |
b3405 |
ompR |
-10.46 |
0.101388 |
231 -- 245 |
8 -- 21 |
response regulator in two-component regulatory system with EnvZ |
|
_____________230_____________246\n_____________|_______________|\n5'-AAU...UGGUC________C______CUGCG...GCG-3'\n______________GAUGACGA_AUGCGC\n______________|||:||:|_||||||\n______________CUAUUGUU_UACGCG\n3'-UUU...UACUA_______________CAGAAAG-5'\n_____________|_______________|\n_____________22______________7\n |
232 -- 238 |
14 -- 20 |
-17.2341 kcal/mol |
5.5408 kcal/mol |
1.23638 kcal/mol |
230 246@LB@ | |@LB@5'-AAU...UGGUC C CUGCG...GCG-3'@LB@ GAUGACGA AUGCGC@LB@ |||:||:| ||||||@LB@ CUAUUGUU UACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -17.2341 kcal/mol@LB@Unfolding Energy - mRNA 5.5408 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 231 -- 245@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 14 -- 20@LB@ |
136 |
0.01311 |
0.3104 |
b0694 |
kdpE |
-14.36 |
0.020608 |
275 -- 287 |
2 -- 14 |
response regulator in two-component regulatory system with KdpD |
|
_____________274___________288\n_____________|_____________|\n5'-ACG...GACGG_____________GAGGC...CGC-3'\n______________GAUGCGCGUCUUU\n______________:||||||||||||\n______________UUACGCGCAGAAA\n3'-UUU...AUUGU_____________G-5'\n_____________|_____________|\n_____________15____________1\n |
281 -- 287 |
2 -- 8 |
-20.3279 kcal/mol |
4.79291 kcal/mol |
1.17514 kcal/mol |
274 288@LB@ | |@LB@5'-ACG...GACGG GAGGC...CGC-3'@LB@ GAUGCGCGUCUUU@LB@ :||||||||||||@LB@ UUACGCGCAGAAA@LB@3'-UUU...AUUGU G-5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -20.3279 kcal/mol@LB@Unfolding Energy - mRNA 4.79291 kcal/mol@LB@Unfolding Energy - sRNA 1.17514 kcal/mol@LB@@LB@Position - mRNA 275 -- 287@LB@Position - sRNA 2 -- 14@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 2 -- 8@LB@ |
52 |
0.004683 |
0.3024 |
b1130 |
phoP |
-12.79 |
0.039529 |
186 -- 208 |
6 -- 31 |
response regulator in two-component regulatory system with PhoQ |
|
_____________185________________________209\n_____________|__________________________|\n5'-GAG...UAAGA_________A________________ACUGG...CCA-3'\n______________CAGGGA_GA__AUAA_AAAUGCGCGU\n______________||||||_||__||||_||||||||||\n______________GUCCCU_CU__UAUU_UUUACGCGCA\n3'-UUU...CUUAA______A__AC____G__________GAAAG-5'\n_____________|__________________________|\n_____________32_________________________5\n |
202 -- 208 |
6 -- 12 |
-26.853 kcal/mol |
6.30535 kcal/mol |
7.75407 kcal/mol |
185 209@LB@ | |@LB@5'-GAG...UAAGA A ACUGG...CCA-3'@LB@ CAGGGA GA AUAA AAAUGCGCGU@LB@ |||||| || |||| ||||||||||@LB@ GUCCCU CU UAUU UUUACGCGCA@LB@3'-UUU...CUUAA A AC G GAAAG-5'@LB@ | |@LB@ 32 5@LB@@LB@@LB@Energy -12.79 kcal/mol@LB@Hybridization Energy -26.853 kcal/mol@LB@Unfolding Energy - mRNA 6.30535 kcal/mol@LB@Unfolding Energy - sRNA 7.75407 kcal/mol@LB@@LB@Position - mRNA 186 -- 208@LB@Position - sRNA 6 -- 31@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 6 -- 12@LB@ |
23 |
0.001384 |
0.1943 |
b0399 |
phoB |
-10.33 |
0.106753 |
53 -- 63 |
8 -- 18 |
response regulator in two-component regulatory system with PhoR |
|
_____________52__________64\n_____________|___________|\n5'-AGG...ACCCA___________CAUUU...AAG-3'\n______________AACAGAUGUGC\n______________||||:|||:||\n______________UUGUUUACGCG\n3'-UUU...UACUA___________CAGAAAG-5'\n_____________|___________|\n_____________19__________7\n |
57 -- 63 |
8 -- 14 |
-14.9736 kcal/mol |
3.44457 kcal/mol |
1.20363 kcal/mol |
52 64@LB@ | |@LB@5'-AGG...ACCCA CAUUU...AAG-3'@LB@ AACAGAUGUGC@LB@ ||||:|||:||@LB@ UUGUUUACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 19 7@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -14.9736 kcal/mol@LB@Unfolding Energy - mRNA 3.44457 kcal/mol@LB@Unfolding Energy - sRNA 1.20363 kcal/mol@LB@@LB@Position - mRNA 53 -- 63@LB@Position - sRNA 8 -- 18@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 8 -- 14@LB@ |
149 |
0.01422 |
0.3104 |
b0415 |
ribE |
-7.20 |
0.333957 |
258 -- 265 |
4 -- 11 |
riboflavin synthase beta chain |
|
_____________257______266\n_____________|________|\n5'-CGG...CCAUC________CAACA...GUG-3'\n______________GCGCGUUU\n______________||||||:|\n______________CGCGCAGA\n3'-UUU...GUUUA________AAG-5'\n_____________|________|\n_____________12_______3\n |
259 -- 265 |
4 -- 10 |
-13.1965 kcal/mol |
4.83677 kcal/mol |
1.15639 kcal/mol |
257 266@LB@ | |@LB@5'-CGG...CCAUC CAACA...GUG-3'@LB@ GCGCGUUU@LB@ ||||||:|@LB@ CGCGCAGA@LB@3'-UUU...GUUUA AAG-5'@LB@ | |@LB@ 12 3@LB@@LB@@LB@Energy -7.20 kcal/mol@LB@Hybridization Energy -13.1965 kcal/mol@LB@Unfolding Energy - mRNA 4.83677 kcal/mol@LB@Unfolding Energy - sRNA 1.15639 kcal/mol@LB@@LB@Position - mRNA 258 -- 265@LB@Position - sRNA 4 -- 11@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 4 -- 10@LB@ |
134 |
0.01294 |
0.3104 |
b2234 |
nrdA |
-13.57 |
0.028625 |
217 -- 231 |
7 -- 22 |
ribonucleoside-diphosphate reductase 1 alpha subunit |
|
_____________216______________232\n_____________|________________|\n5'-GAC...UCUGC________________ACGGU...UGC-3'\n______________UGGUGACAAA_GCGCG\n______________||:|:|||||_|||||\n______________ACUAUUGUUU_CGCGC\n3'-UUU...CUACU__________A_____AGAAAG-5'\n_____________|________________|\n_____________23_______________6\n |
220 -- 226 |
13 -- 19 |
-19.6051 kcal/mol |
4.78775 kcal/mol |
1.24379 kcal/mol |
216 232@LB@ | |@LB@5'-GAC...UCUGC ACGGU...UGC-3'@LB@ UGGUGACAAA GCGCG@LB@ ||:|:||||| |||||@LB@ ACUAUUGUUU CGCGC@LB@3'-UUU...CUACU A AGAAAG-5'@LB@ | |@LB@ 23 6@LB@@LB@@LB@Energy -13.57 kcal/mol@LB@Hybridization Energy -19.6051 kcal/mol@LB@Unfolding Energy - mRNA 4.78775 kcal/mol@LB@Unfolding Energy - sRNA 1.24379 kcal/mol@LB@@LB@Position - mRNA 217 -- 231@LB@Position - sRNA 7 -- 22@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 13 -- 19@LB@ |
118 |
0.01199 |
0.3104 |
b2573 |
rpoE |
-10.72 |
0.091300 |
77 -- 87 |
8 -- 18 |
RNA polymerase sigma E factor |
|
_____________76__________88\n_____________|___________|\n5'-ACA...ACAAA___________UACGG...UGG-3'\n______________AACAGAUGCGU\n______________||||:|||||:\n______________UUGUUUACGCG\n3'-UUU...UACUA___________CAGAAAG-5'\n_____________|___________|\n_____________19__________7\n |
81 -- 87 |
8 -- 14 |
-15.0531 kcal/mol |
3.12642 kcal/mol |
1.20363 kcal/mol |
76 88@LB@ | |@LB@5'-ACA...ACAAA UACGG...UGG-3'@LB@ AACAGAUGCGU@LB@ ||||:|||||:@LB@ UUGUUUACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 19 7@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -15.0531 kcal/mol@LB@Unfolding Energy - mRNA 3.12642 kcal/mol@LB@Unfolding Energy - sRNA 1.20363 kcal/mol@LB@@LB@Position - mRNA 77 -- 87@LB@Position - sRNA 8 -- 18@LB@Position Seed - mRNA 81 -- 87@LB@Position Seed - sRNA 8 -- 14@LB@ |
88 |
0.008928 |
0.3104 |
b0405 |
queA |
-8.89 |
0.184414 |
201 -- 209 |
5 -- 13 |
S-adenosylmethionine:tRNA ribosyltransferase-isomerase |
|
_____________200_______210\n_____________|_________|\n5'-GGG...GUGUC_________ACCGA...GGC-3'\n______________AUGCGCGUU\n______________||||||||:\n______________UACGCGCAG\n3'-UUU...UUGUU_________AAAG-5'\n_____________|_________|\n_____________14________4\n |
203 -- 209 |
5 -- 11 |
-14.1161 kcal/mol |
4.07268 kcal/mol |
1.15134 kcal/mol |
200 210@LB@ | |@LB@5'-GGG...GUGUC ACCGA...GGC-3'@LB@ AUGCGCGUU@LB@ ||||||||:@LB@ UACGCGCAG@LB@3'-UUU...UUGUU AAAG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -8.89 kcal/mol@LB@Hybridization Energy -14.1161 kcal/mol@LB@Unfolding Energy - mRNA 4.07268 kcal/mol@LB@Unfolding Energy - sRNA 1.15134 kcal/mol@LB@@LB@Position - mRNA 201 -- 209@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 5 -- 11@LB@ |
1 |
0 |
0 |
b2687 |
luxS |
-86.29 |
0.000000 |
61 -- 132 |
1 -- 72 |
S-ribosylhomocysteine lyase |
|
_____________60_______________________________________________________________________133\n_____________|________________________________________________________________________|\n5'-GAA...AAAGA________________________________________________________________________AUAUA...UCA-3'\n______________AAAAGGCCACUCGUGAGUGGCCAAAAUUUCAUCUCUGAAUUCAGGGAUGAUGAUAACAAAUGCGCGUCUUUC\n______________||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UUUUCCGGUGAGCACUCACCGGUUUUAAAGUAGAGACUUAAGUCCCUACUACUAUUGUUUACGCGCAGAAAG\n___________3'-________________________________________________________________________-5'\n______________|______________________________________________________________________|\n______________72_____________________________________________________________________1\n |
126 -- 132 |
1 -- 7 |
-138.099 kcal/mol |
30.0464 kcal/mol |
21.7639 kcal/mol |
60 133@LB@ | |@LB@5'-GAA...AAAGA AUAUA...UCA-3'@LB@ AAAAGGCCACUCGUGAGUGGCCAAAAUUUCAUCUCUGAAUUCAGGGAUGAUGAUAACAAAUGCGCGUCUUUC@LB@ ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UUUUCCGGUGAGCACUCACCGGUUUUAAAGUAGAGACUUAAGUCCCUACUACUAUUGUUUACGCGCAGAAAG@LB@ 3'- -5'@LB@ | |@LB@ 72 1@LB@@LB@@LB@Energy -86.29 kcal/mol@LB@Hybridization Energy -138.099 kcal/mol@LB@Unfolding Energy - mRNA 30.0464 kcal/mol@LB@Unfolding Energy - sRNA 21.7639 kcal/mol@LB@@LB@Position - mRNA 61 -- 132@LB@Position - sRNA 1 -- 72@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 1 -- 7@LB@ |
48 |
0.00405 |
0.2857 |
b0409 |
secF |
-13.37 |
0.031213 |
166 -- 172 |
5 -- 11 |
SecYEG protein translocase auxillary subunit |
|
_____________165_____173\n_____________|_______|\n5'-CUU...GGCAA_______AAGAA...UGU-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
166 -- 172 |
5 -- 11 |
-14.9857 kcal/mol |
0.509172 kcal/mol |
1.11145 kcal/mol |
165 173@LB@ | |@LB@5'-CUU...GGCAA AAGAA...UGU-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -13.37 kcal/mol@LB@Hybridization Energy -14.9857 kcal/mol@LB@Unfolding Energy - mRNA 0.509172 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 166 -- 172@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 5 -- 11@LB@ |
13 |
0.0003435 |
0.08948 |
b2551 |
glyA |
-14.51 |
0.019315 |
147 -- 213 |
7 -- 69 |
serine hydroxymethyltransferase |
|
_____________146____________________________________________________________________214\n_____________|______________________________________________________________________|\n5'-CAA...CCAAC___A______UAUAAA_______A________GUUAG___________A____CG____U__________AAAUG...UCG-3'\n______________AGG_CCGC_C______GGCCAAA_AUUUUAUU_____CUGAG_UCAGG_GAUG__GAUG_UAAA_GCGUG\n______________|||_||:|_|______|||||||_||||:||:_____||||:_|||||_||||__|||:_:|||_|||:|\n______________UCC_GGUG_G______CCGGUUU_UAAAGUAG_____GACUU_AGUCC_CUAC__CUAU_GUUU_CGCGC\n________3'-UUU________A_CACUCA________________A_________A__________UA____U____A_____AGAAAG-5'\n_____________|______________________________________________________________________|\n_____________70_____________________________________________________________________6\n |
162 -- 168 |
48 -- 54 |
-52.4461 kcal/mol |
16.168 kcal/mol |
21.7638 kcal/mol |
146 214@LB@ | |@LB@5'-CAA...CCAAC A UAUAAA A GUUAG A CG U AAAUG...UCG-3'@LB@ AGG CCGC C GGCCAAA AUUUUAUU CUGAG UCAGG GAUG GAUG UAAA GCGUG@LB@ ||| ||:| | ||||||| ||||:||: ||||: ||||| |||| |||: :||| |||:|@LB@ UCC GGUG G CCGGUUU UAAAGUAG GACUU AGUCC CUAC CUAU GUUU CGCGC@LB@ 3'-UUU A CACUCA A A UA U A AGAAAG-5'@LB@ | |@LB@ 70 6@LB@@LB@@LB@Energy -14.51 kcal/mol@LB@Hybridization Energy -52.4461 kcal/mol@LB@Unfolding Energy - mRNA 16.168 kcal/mol@LB@Unfolding Energy - sRNA 21.7638 kcal/mol@LB@@LB@Position - mRNA 147 -- 213@LB@Position - sRNA 7 -- 69@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 48 -- 54@LB@ |
98 |
0.009835 |
0.3104 |
b1213 |
ychQ |
-13.77 |
0.026325 |
164 -- 179 |
6 -- 23 |
SIRB family inner membrane protein |
|
_____________163________________180\n_____________|__________________|\n5'-GAC...CUAUG__________________AACGC...AUC-3'\n______________GUGAUAACGA__GCGCGU\n______________:|||||||:|__||||||\n______________UACUAUUGUU__CGCGCA\n3'-UUU...CCUAC__________UA______GAAAG-5'\n_____________|__________________|\n_____________24_________________5\n |
167 -- 173 |
14 -- 20 |
-20.3809 kcal/mol |
4.08318 kcal/mol |
2.52311 kcal/mol |
163 180@LB@ | |@LB@5'-GAC...CUAUG AACGC...AUC-3'@LB@ GUGAUAACGA GCGCGU@LB@ :|||||||:| ||||||@LB@ UACUAUUGUU CGCGCA@LB@3'-UUU...CCUAC UA GAAAG-5'@LB@ | |@LB@ 24 5@LB@@LB@@LB@Energy -13.77 kcal/mol@LB@Hybridization Energy -20.3809 kcal/mol@LB@Unfolding Energy - mRNA 4.08318 kcal/mol@LB@Unfolding Energy - sRNA 2.52311 kcal/mol@LB@@LB@Position - mRNA 164 -- 179@LB@Position - sRNA 6 -- 23@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 14 -- 20@LB@ |
75 |
0.006972 |
0.3087 |
b4348 |
hsdS |
-13.63 |
0.027959 |
190 -- 211 |
7 -- 29 |
specificity determinant for hsdM and hsdR |
|
_____________189_____________________212\n_____________|_______________________|\n5'-CUG...UUGGU_______A_____________G_GAAAU...UAA-3'\n______________GGGGUGA_GG_AAUGAGUGCG_G\n______________|||:|||_|:_||::|:||||_|\n______________CCCUACU_CU_UUGUUUACGC_C\n3'-UUU...UAAGU_______A__A__________G_AGAAAG-5'\n_____________|_______________________|\n_____________30______________________6\n |
203 -- 209 |
9 -- 15 |
-24.9713 kcal/mol |
3.9222 kcal/mol |
7.41901 kcal/mol |
189 212@LB@ | |@LB@5'-CUG...UUGGU A G GAAAU...UAA-3'@LB@ GGGGUGA GG AAUGAGUGCG G@LB@ |||:||| |: ||::|:|||| |@LB@ CCCUACU CU UUGUUUACGC C@LB@3'-UUU...UAAGU A A G AGAAAG-5'@LB@ | |@LB@ 30 6@LB@@LB@@LB@Energy -13.63 kcal/mol@LB@Hybridization Energy -24.9713 kcal/mol@LB@Unfolding Energy - mRNA 3.9222 kcal/mol@LB@Unfolding Energy - sRNA 7.41901 kcal/mol@LB@@LB@Position - mRNA 190 -- 211@LB@Position - sRNA 7 -- 29@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 9 -- 15@LB@ |
176 |
0.01748 |
0.3104 |
b0435 |
bolA |
-9.78 |
0.131850 |
202 -- 220 |
4 -- 22 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________201_________________221\n_____________|___________________|\n5'-UGA...UUUCA________C___A___GA_AGAAG...CCG-3'\n______________UGAUGAUA_GUG_GCG__U\n______________||||:|:|_:||_|||__|\n______________ACUAUUGU_UAC_CGC__A\n3'-UUU...CUACU________U___G___AG_AAG-5'\n_____________|___________________|\n_____________23__________________3\n |
203 -- 209 |
15 -- 21 |
-14.8727 kcal/mol |
3.8346 kcal/mol |
1.2572 kcal/mol |
201 221@LB@ | |@LB@5'-UGA...UUUCA C A GA AGAAG...CCG-3'@LB@ UGAUGAUA GUG GCG U@LB@ ||||:|:| :|| ||| |@LB@ ACUAUUGU UAC CGC A@LB@3'-UUU...CUACU U G AG AAG-5'@LB@ | |@LB@ 23 3@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -14.8727 kcal/mol@LB@Unfolding Energy - mRNA 3.8346 kcal/mol@LB@Unfolding Energy - sRNA 1.2572 kcal/mol@LB@@LB@Position - mRNA 202 -- 220@LB@Position - sRNA 4 -- 22@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 15 -- 21@LB@ |
107 |
0.01107 |
0.3104 |
b0723 |
sdhA |
-7.08 |
0.348281 |
169 -- 200 |
7 -- 42 |
succinate dehydrogenase flavoprotein subunit |
|
_____________168__________________________________201\n_____________|____________________________________|\n5'-GGU...ACGUG____A________UU_______UG____________AUGAA...GUG-3'\n______________AUUU_UGGAUUCG___GUGGUG_____GGGUGUGUG\n______________||:|_||:||||:___:||:||_____:::||:|:|\n______________UAGA_ACUUAAGU___UACUAC_____UUUACGCGC\n3'-UUU...UAAAG____G________CCC______UAUUG_________AGAAAG-5'\n_____________|____________________________________|\n_____________43___________________________________6\n |
194 -- 200 |
7 -- 13 |
-22.2639 kcal/mol |
5.75915 kcal/mol |
9.42962 kcal/mol |
168 201@LB@ | |@LB@5'-GGU...ACGUG A UU UG AUGAA...GUG-3'@LB@ AUUU UGGAUUCG GUGGUG GGGUGUGUG@LB@ ||:| ||:||||: :||:|| :::||:|:|@LB@ UAGA ACUUAAGU UACUAC UUUACGCGC@LB@3'-UUU...UAAAG G CCC UAUUG AGAAAG-5'@LB@ | |@LB@ 43 6@LB@@LB@@LB@Energy -7.08 kcal/mol@LB@Hybridization Energy -22.2639 kcal/mol@LB@Unfolding Energy - mRNA 5.75915 kcal/mol@LB@Unfolding Energy - sRNA 9.42962 kcal/mol@LB@@LB@Position - mRNA 169 -- 200@LB@Position - sRNA 7 -- 42@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 7 -- 13@LB@ |
145 |
0.01404 |
0.3104 |
b0721 |
sdhC |
-10.79 |
0.088833 |
202 -- 215 |
9 -- 22 |
succinate dehydrogenase membrane subunit binds cytochrome b556 |
|
_____________201____________216\n_____________|______________|\n5'-UCC...AUUCA______G_______AAAAA...CCG-3'\n______________UGAUAA_AAAUGUG\n______________||||||_|||||:|\n______________ACUAUU_UUUACGC\n3'-UUU...CUACU______G_______GCAGAAAG-5'\n_____________|______________|\n_____________23_____________8\n |
209 -- 215 |
9 -- 15 |
-14.1232 kcal/mol |
2.09271 kcal/mol |
1.23827 kcal/mol |
201 216@LB@ | |@LB@5'-UCC...AUUCA G AAAAA...CCG-3'@LB@ UGAUAA AAAUGUG@LB@ |||||| |||||:|@LB@ ACUAUU UUUACGC@LB@3'-UUU...CUACU G GCAGAAAG-5'@LB@ | |@LB@ 23 8@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -14.1232 kcal/mol@LB@Unfolding Energy - mRNA 2.09271 kcal/mol@LB@Unfolding Energy - sRNA 1.23827 kcal/mol@LB@@LB@Position - mRNA 202 -- 215@LB@Position - sRNA 9 -- 22@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 9 -- 15@LB@ |
142 |
0.01346 |
0.3104 |
b0729 |
sucD |
-11.71 |
0.061414 |
39 -- 57 |
3 -- 21 |
succinyl-CoA synthetase NAD(P)-binding alpha subunit |
|
_____________38__________________58\n_____________|___________________|\n5'-GUU...GGCGC_________A___G__G__AACGU...CUA-3'\n______________GGUAGCAGA_GUG_GU_UU\n______________|:||:||:|_|:|_||_||\n______________CUAUUGUUU_CGC_CA_AA\n3'-UUU...UACUA_________A___G__G__AG-5'\n_____________|___________________|\n_____________22__________________2\n |
41 -- 47 |
13 -- 19 |
-17.4316 kcal/mol |
4.46052 kcal/mol |
1.257 kcal/mol |
38 58@LB@ | |@LB@5'-GUU...GGCGC A G G AACGU...CUA-3'@LB@ GGUAGCAGA GUG GU UU@LB@ |:||:||:| |:| || ||@LB@ CUAUUGUUU CGC CA AA@LB@3'-UUU...UACUA A G G AG-5'@LB@ | |@LB@ 22 2@LB@@LB@@LB@Energy -11.71 kcal/mol@LB@Hybridization Energy -17.4316 kcal/mol@LB@Unfolding Energy - mRNA 4.46052 kcal/mol@LB@Unfolding Energy - sRNA 1.257 kcal/mol@LB@@LB@Position - mRNA 39 -- 57@LB@Position - sRNA 3 -- 21@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 13 -- 19@LB@ |
105 |
0.01074 |
0.3104 |
b3791 |
wecE |
-13.91 |
0.024834 |
1 -- 12 |
7 -- 18 |
TDP-4-oxo-6-deoxy-D-glucose transaminase |
|
______________1___________13\n______________|___________|\n___________5'-____________AAUUG...CCC-3'\n______________GACAGAUGCGCG\n______________:|||:|||||||\n______________UUGUUUACGCGC\n3'-UUU...UACUA____________AGAAAG-5'\n_____________|____________|\n_____________19___________6\n |
6 -- 12 |
7 -- 13 |
-19.4696 kcal/mol |
4.34626 kcal/mol |
1.20891 kcal/mol |
1 13@LB@ | |@LB@ 5'- AAUUG...CCC-3'@LB@ GACAGAUGCGCG@LB@ :|||:|||||||@LB@ UUGUUUACGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 19 6@LB@@LB@@LB@Energy -13.91 kcal/mol@LB@Hybridization Energy -19.4696 kcal/mol@LB@Unfolding Energy - mRNA 4.34626 kcal/mol@LB@Unfolding Energy - sRNA 1.20891 kcal/mol@LB@@LB@Position - mRNA 1 -- 12@LB@Position - sRNA 7 -- 18@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 7 -- 13@LB@ |
53 |
0.004896 |
0.3024 |
b3790 |
wecD |
-9.15 |
0.167607 |
125 -- 139 |
7 -- 21 |
TDP-fucosamine acetyltransferase |
|
_____________124_____________140\n_____________|_______________|\n5'-CUG...GGCUC_________G_____AAGCG...UGA-3'\n______________GAUGACGAG_GUGUG\n______________|||:||:|:_|:|:|\n______________CUAUUGUUU_CGCGC\n3'-UUU...UACUA_________A_____AGAAAG-5'\n_____________|_______________|\n_____________22______________6\n |
126 -- 132 |
14 -- 20 |
-15.9636 kcal/mol |
5.57309 kcal/mol |
1.24179 kcal/mol |
124 140@LB@ | |@LB@5'-CUG...GGCUC G AAGCG...UGA-3'@LB@ GAUGACGAG GUGUG@LB@ |||:||:|: |:|:|@LB@ CUAUUGUUU CGCGC@LB@3'-UUU...UACUA A AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -9.15 kcal/mol@LB@Hybridization Energy -15.9636 kcal/mol@LB@Unfolding Energy - mRNA 5.57309 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 125 -- 139@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 14 -- 20@LB@ |
193 |
0.01896 |
0.3104 |
b3181 |
greA |
-10.36 |
0.105339 |
194 -- 204 |
10 -- 20 |
transcript cleavage factor |
|
_____________193_________205\n_____________|___________|\n5'-CGC...GAGGU___________AAGCU...UCG-3'\n______________AUAACAAAUGC\n______________|||||||||||\n______________UAUUGUUUACG\n3'-UUU...ACUAC___________CGCAG...AAG-5'\n_____________|___________|\n_____________21__________9\n |
198 -- 204 |
10 -- 16 |
-13.1767 kcal/mol |
1.58941 kcal/mol |
1.22774 kcal/mol |
193 205@LB@ | |@LB@5'-CGC...GAGGU AAGCU...UCG-3'@LB@ AUAACAAAUGC@LB@ |||||||||||@LB@ UAUUGUUUACG@LB@3'-UUU...ACUAC CGCAG...AAG-5'@LB@ | |@LB@ 21 9@LB@@LB@@LB@Energy -10.36 kcal/mol@LB@Hybridization Energy -13.1767 kcal/mol@LB@Unfolding Energy - mRNA 1.58941 kcal/mol@LB@Unfolding Energy - sRNA 1.22774 kcal/mol@LB@@LB@Position - mRNA 194 -- 204@LB@Position - sRNA 10 -- 20@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 10 -- 16@LB@ |
189 |
0.01853 |
0.3104 |
b3743 |
asnC |
-7.74 |
0.278830 |
255 -- 266 |
5 -- 18 |
transcriptional activator of asnA; autorepressor |
|
_____________254____________267\n_____________|______________|\n5'-AUU...UAAUG______________ACCGC...GCG-3'\n______________GGC_AAUGCGCG_C\n______________::|_||||||||_|\n______________UUG_UUACGCGC_G\n3'-UUU...UACUA___U________A_AAAG-5'\n_____________|______________|\n_____________19_____________4\n |
259 -- 265 |
7 -- 13 |
-14.4034 kcal/mol |
5.44099 kcal/mol |
1.2243 kcal/mol |
254 267@LB@ | |@LB@5'-AUU...UAAUG ACCGC...GCG-3'@LB@ GGC AAUGCGCG C@LB@ ::| |||||||| |@LB@ UUG UUACGCGC G@LB@3'-UUU...UACUA U A AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -7.74 kcal/mol@LB@Hybridization Energy -14.4034 kcal/mol@LB@Unfolding Energy - mRNA 5.44099 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 255 -- 266@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 7 -- 13@LB@ |
40 |
0.002726 |
0.2279 |
b1799 |
dmlR |
-13.48 |
0.029707 |
223 -- 239 |
2 -- 20 |
transcriptional activator of dmlA |
b3060 |
_____________222_________________240\n_____________|___________________|\n5'-CGC...GCUGA_____U_____________AUGCU...CGG-3'\n______________AUGAU___UGCGCGUCUUU\n______________||:|:___|||||||||||\n______________UAUUG___ACGCGCAGAAA\n3'-UUU...ACUAC_____UUU___________G-5'\n_____________|___________________|\n_____________21__________________1\n |
233 -- 239 |
2 -- 8 |
-19.9945 kcal/mol |
5.2543 kcal/mol |
1.25604 kcal/mol |
222 240@LB@ | |@LB@5'-CGC...GCUGA U AUGCU...CGG-3'@LB@ AUGAU UGCGCGUCUUU@LB@ ||:|: |||||||||||@LB@ UAUUG ACGCGCAGAAA@LB@3'-UUU...ACUAC UUU G-5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -13.48 kcal/mol@LB@Hybridization Energy -19.9945 kcal/mol@LB@Unfolding Energy - mRNA 5.2543 kcal/mol@LB@Unfolding Energy - sRNA 1.25604 kcal/mol@LB@@LB@Position - mRNA 223 -- 239@LB@Position - sRNA 2 -- 20@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 2 -- 8@LB@ |
173 |
0.0173 |
0.3104 |
b0145 |
dksA |
-10.49 |
0.099910 |
175 -- 187 |
5 -- 21 |
transcriptional regulator of rRNA transcription; DnaK suppressor protein |
|
_____________174_______________188\n_____________|_________________|\n5'-AAU...GGAUC_________________AAGGA...AUG-3'\n______________GAUA____GUGCGUGUU\n______________||||____:||||:||:\n______________CUAU____UACGCGCAG\n3'-UUU...UACUA____UGUU_________AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
181 -- 187 |
5 -- 11 |
-14.603 kcal/mol |
2.85898 kcal/mol |
1.24955 kcal/mol |
174 188@LB@ | |@LB@5'-AAU...GGAUC AAGGA...AUG-3'@LB@ GAUA GUGCGUGUU@LB@ |||| :||||:||:@LB@ CUAU UACGCGCAG@LB@3'-UUU...UACUA UGUU AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -14.603 kcal/mol@LB@Unfolding Energy - mRNA 2.85898 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 175 -- 187@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 5 -- 11@LB@ |
165 |
0.01591 |
0.3104 |
b4393 |
trpR |
-12.13 |
0.051953 |
230 -- 246 |
5 -- 21 |
transcriptional repressor tryptophan-binding |
|
_____________229_______________247\n_____________|_________________|\n5'-GAG...GCAGC_________ACA_____ACCAG...AUC-3'\n______________GAUGGCAGA___GCGUC\n______________|||::||:|___|||||\n______________CUAUUGUUU___CGCAG\n3'-UUU...UACUA_________ACG_____AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
232 -- 238 |
13 -- 19 |
-18.7652 kcal/mol |
5.38929 kcal/mol |
1.24955 kcal/mol |
229 247@LB@ | |@LB@5'-GAG...GCAGC ACA ACCAG...AUC-3'@LB@ GAUGGCAGA GCGUC@LB@ |||::||:| |||||@LB@ CUAUUGUUU CGCAG@LB@3'-UUU...UACUA ACG AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -12.13 kcal/mol@LB@Hybridization Energy -18.7652 kcal/mol@LB@Unfolding Energy - mRNA 5.38929 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 230 -- 246@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 13 -- 19@LB@ |
167 |
0.01599 |
0.3104 |
b4220 |
tamA |
-9.57 |
0.142740 |
193 -- 207 |
4 -- 21 |
translocation and assembly module for autotransporter export outer membrane subunit |
|
_____________192________________208\n_____________|__________________|\n5'-CGC...UUCAG__GA______________AUAUC...GAC-3'\n______________GA____AAAUGUGCG_CU\n______________||____|||||:|||_||\n______________CU____UUUACGCGC_GA\n3'-UUU...UACUA__AUUG_________A__AAG-5'\n_____________|__________________|\n_____________22_________________3\n |
199 -- 205 |
7 -- 13 |
-13.0971 kcal/mol |
2.26836 kcal/mol |
1.2552 kcal/mol |
192 208@LB@ | |@LB@5'-CGC...UUCAG GA AUAUC...GAC-3'@LB@ GA AAAUGUGCG CU@LB@ || |||||:||| ||@LB@ CU UUUACGCGC GA@LB@3'-UUU...UACUA AUUG A AAG-5'@LB@ | |@LB@ 22 3@LB@@LB@@LB@Energy -9.57 kcal/mol@LB@Hybridization Energy -13.0971 kcal/mol@LB@Unfolding Energy - mRNA 2.26836 kcal/mol@LB@Unfolding Energy - sRNA 1.2552 kcal/mol@LB@@LB@Position - mRNA 193 -- 207@LB@Position - sRNA 4 -- 21@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 7 -- 13@LB@ |
100 |
0.01004 |
0.3104 |
b3166 |
truB |
-9.42 |
0.151044 |
113 -- 128 |
5 -- 18 |
tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase |
|
_____________112______________129\n_____________|________________|\n5'-GGC...GGUUG__G________AU___AAACC...AAC-3'\n______________AA_GGAUGCGC__GUC\n______________||_::||||||__|||\n______________UU_UUUACGCG__CAG\n3'-UUU...UACUA__G_____________AAAG-5'\n_____________|________________|\n_____________19_______________4\n |
117 -- 123 |
8 -- 14 |
-15.4757 kcal/mol |
4.82661 kcal/mol |
1.2243 kcal/mol |
112 129@LB@ | |@LB@5'-GGC...GGUUG G AU AAACC...AAC-3'@LB@ AA GGAUGCGC GUC@LB@ || ::|||||| |||@LB@ UU UUUACGCG CAG@LB@3'-UUU...UACUA G AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -9.42 kcal/mol@LB@Hybridization Energy -15.4757 kcal/mol@LB@Unfolding Energy - mRNA 4.82661 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 113 -- 128@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 8 -- 14@LB@ |
59 |
0.005538 |
0.3084 |
b2812 |
tcdA |
-16.71 |
0.007603 |
29 -- 48 |
1 -- 19 |
tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA |
|
_____________28___________________49\n_____________|____________________|\n5'-GUG...AUUAU____U___________G___AUGCC...UUU-3'\n______________UGAC_AAGUGCGCGUU_UUC\n______________|:||_||:|||||||:_|||\n______________AUUG_UUUACGCGCAG_AAG\n3'-UUU...CUACU________________A___-5'\n_____________|___________________|\n_____________20__________________1\n |
38 -- 44 |
5 -- 11 |
-22.1898 kcal/mol |
4.2278 kcal/mol |
1.25156 kcal/mol |
28 49@LB@ | |@LB@5'-GUG...AUUAU U G AUGCC...UUU-3'@LB@ UGAC AAGUGCGCGUU UUC@LB@ |:|| ||:|||||||: |||@LB@ AUUG UUUACGCGCAG AAG@LB@3'-UUU...CUACU A -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -16.71 kcal/mol@LB@Hybridization Energy -22.1898 kcal/mol@LB@Unfolding Energy - mRNA 4.2278 kcal/mol@LB@Unfolding Energy - sRNA 1.25156 kcal/mol@LB@@LB@Position - mRNA 29 -- 48@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 5 -- 11@LB@ |
2 |
9.051e-06 |
0.01532 |
b2745 |
truD |
-15.77 |
0.011349 |
54 -- 69 |
2 -- 17 |
tRNA(Glu) pseudouridine(13) synthase |
|
_____________53_______________70\n_____________|________________|\n5'-AAC...AUUCC____________G___AUUGC...UGG-3'\n______________ACAAAUGCGCGU_UUU\n______________||||||||||||_|||\n______________UGUUUACGCGCA_AAA\n3'-UUU...ACUAU____________G___G-5'\n_____________|________________|\n_____________18_______________1\n |
59 -- 65 |
6 -- 12 |
-22.0257 kcal/mol |
5.01487 kcal/mol |
1.23894 kcal/mol |
53 70@LB@ | |@LB@5'-AAC...AUUCC G AUUGC...UGG-3'@LB@ ACAAAUGCGCGU UUU@LB@ |||||||||||| |||@LB@ UGUUUACGCGCA AAA@LB@3'-UUU...ACUAU G G-5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -15.77 kcal/mol@LB@Hybridization Energy -22.0257 kcal/mol@LB@Unfolding Energy - mRNA 5.01487 kcal/mol@LB@Unfolding Energy - sRNA 1.23894 kcal/mol@LB@@LB@Position - mRNA 54 -- 69@LB@Position - sRNA 2 -- 17@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 6 -- 12@LB@ |
15 |
0.000461 |
0.102 |
b2140 |
dusC |
-12.07 |
0.053129 |
194 -- 211 |
3 -- 22 |
tRNA-dihydrouridine synthase C |
|
_____________193__________________212\n_____________|____________________|\n5'-AAU...GCGGG_________________G__ACUGG...UUG-3'\n______________UGAUGAU__AUGCGUGU_UU\n______________||||:|:__|||||:||_||\n______________ACUAUUG__UACGCGCA_AA\n3'-UUU...CUACU_______UU________G__AG-5'\n_____________|____________________|\n_____________23___________________2\n |
202 -- 208 |
6 -- 12 |
-18.0697 kcal/mol |
4.73944 kcal/mol |
1.259 kcal/mol |
193 212@LB@ | |@LB@5'-AAU...GCGGG G ACUGG...UUG-3'@LB@ UGAUGAU AUGCGUGU UU@LB@ ||||:|: |||||:|| ||@LB@ ACUAUUG UACGCGCA AA@LB@3'-UUU...CUACU UU G AG-5'@LB@ | |@LB@ 23 2@LB@@LB@@LB@Energy -12.07 kcal/mol@LB@Hybridization Energy -18.0697 kcal/mol@LB@Unfolding Energy - mRNA 4.73944 kcal/mol@LB@Unfolding Energy - sRNA 1.259 kcal/mol@LB@@LB@Position - mRNA 194 -- 211@LB@Position - sRNA 3 -- 22@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 6 -- 12@LB@ |
87 |
0.008927 |
0.3104 |
b0195 |
tsaA |
-8.24 |
0.234029 |
220 -- 237 |
1 -- 18 |
tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase SAM-dependent |
|
_____________219________________238\n_____________|__________________|\n5'-GAA...GUUCG_______AG_____A___GCUCG...ACG-3'\n______________AGCAAAU__GCGUU_UUC\n______________|:|||||__||||:_|||\n______________UUGUUUA__CGCAG_AAG\n3'-UUU...UACUA_______CG_____A___-5'\n_____________|_________________|\n_____________19________________1\n |
220 -- 226 |
12 -- 18 |
-15.6275 kcal/mol |
6.14962 kcal/mol |
1.24077 kcal/mol |
219 238@LB@ | |@LB@5'-GAA...GUUCG AG A GCUCG...ACG-3'@LB@ AGCAAAU GCGUU UUC@LB@ |:||||| ||||: |||@LB@ UUGUUUA CGCAG AAG@LB@3'-UUU...UACUA CG A -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -8.24 kcal/mol@LB@Hybridization Energy -15.6275 kcal/mol@LB@Unfolding Energy - mRNA 6.14962 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 220 -- 237@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 12 -- 18@LB@ |
66 |
0.006019 |
0.3087 |
b0223 |
yafJ |
-7.05 |
0.351504 |
68 -- 78 |
1 -- 10 |
type 2 glutamine amidotransferase family protein |
|
_____________67__________79\n_____________|___________|\n5'-GCG...GCUGA________A__AUGCC...AAG-3'\n______________CGCGUCUU_UC\n______________||||||||_||\n______________GCGCAGAA_AG\n3'-UUU...UUUAC___________-5'\n_____________|__________|\n_____________11_________1\n |
69 -- 75 |
3 -- 9 |
-12.9748 kcal/mol |
4.76165 kcal/mol |
1.16635 kcal/mol |
67 79@LB@ | |@LB@5'-GCG...GCUGA A AUGCC...AAG-3'@LB@ CGCGUCUU UC@LB@ |||||||| ||@LB@ GCGCAGAA AG@LB@3'-UUU...UUUAC -5'@LB@ | |@LB@ 11 1@LB@@LB@@LB@Energy -7.05 kcal/mol@LB@Hybridization Energy -12.9748 kcal/mol@LB@Unfolding Energy - mRNA 4.76165 kcal/mol@LB@Unfolding Energy - sRNA 1.16635 kcal/mol@LB@@LB@Position - mRNA 68 -- 78@LB@Position - sRNA 1 -- 10@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 3 -- 9@LB@ |
130 |
0.01263 |
0.3104 |
b1952 |
dsrB |
-7.17 |
0.338083 |
230 -- 240 |
7 -- 18 |
uncharacterized protein |
|
_____________229__________241\n_____________|____________|\n5'-CGU...GUCAA____________GUCCG...ACC-3'\n______________AACGGAUG_GCG\n______________|||::|||_|||\n______________UUGUUUAC_CGC\n3'-UUU...UACUA________G___AGAAAG-5'\n_____________|____________|\n_____________19___________6\n |
231 -- 237 |
11 -- 17 |
-11.9456 kcal/mol |
3.57064 kcal/mol |
1.20891 kcal/mol |
229 241@LB@ | |@LB@5'-CGU...GUCAA GUCCG...ACC-3'@LB@ AACGGAUG GCG@LB@ |||::||| |||@LB@ UUGUUUAC CGC@LB@3'-UUU...UACUA G AGAAAG-5'@LB@ | |@LB@ 19 6@LB@@LB@@LB@Energy -7.17 kcal/mol@LB@Hybridization Energy -11.9456 kcal/mol@LB@Unfolding Energy - mRNA 3.57064 kcal/mol@LB@Unfolding Energy - sRNA 1.20891 kcal/mol@LB@@LB@Position - mRNA 230 -- 240@LB@Position - sRNA 7 -- 18@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 11 -- 17@LB@ |
191 |
0.01886 |
0.3104 |
b3494 |
uspB |
-6.32 |
0.440313 |
280 -- 286 |
5 -- 11 |
universal stress (ethanol tolerance) protein B |
|
_____________279_____287\n_____________|_______|\n5'-AAU...ACUAC_______GUUAG...UGC-3'\n______________GCGCGUU\n______________||||||:\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
280 -- 286 |
5 -- 11 |
-11.0709 kcal/mol |
3.63469 kcal/mol |
1.11145 kcal/mol |
279 287@LB@ | |@LB@5'-AAU...ACUAC GUUAG...UGC-3'@LB@ GCGCGUU@LB@ ||||||:@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -6.32 kcal/mol@LB@Hybridization Energy -11.0709 kcal/mol@LB@Unfolding Energy - mRNA 3.63469 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 280 -- 286@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 5 -- 11@LB@ |
62 |
0.005646 |
0.3084 |
b1242 |
ychE |
-13.92 |
0.024785 |
141 -- 151 |
1 -- 11 |
UPF0056 family inner membrane protein |
|
_____________140_________152\n_____________|___________|\n5'-CAU...UGUCA___________CAACC...GCA-3'\n______________GCGCGUCUUUU\n______________||||||||||:\n______________CGCGCAGAAAG\n3'-UUU...GUUUA___________-5'\n_____________|__________|\n_____________12_________1\n |
145 -- 151 |
1 -- 7 |
-17.9236 kcal/mol |
2.83374 kcal/mol |
1.17076 kcal/mol |
140 152@LB@ | |@LB@5'-CAU...UGUCA CAACC...GCA-3'@LB@ GCGCGUCUUUU@LB@ ||||||||||:@LB@ CGCGCAGAAAG@LB@3'-UUU...GUUUA -5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -13.92 kcal/mol@LB@Hybridization Energy -17.9236 kcal/mol@LB@Unfolding Energy - mRNA 2.83374 kcal/mol@LB@Unfolding Energy - sRNA 1.17076 kcal/mol@LB@@LB@Position - mRNA 141 -- 151@LB@Position - sRNA 1 -- 11@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 1 -- 7@LB@ |
19 |
0.0006629 |
0.1181 |
b2909 |
ygfB |
-11.13 |
0.077732 |
186 -- 206 |
4 -- 22 |
UPF0149 family protein |
|
_____________185___________________207\n_____________|_____________________|\n5'-AAA...CCCUU___C_________UUA_____AUACA...UCA-3'\n______________UGA_GACGAAUGC___UGUCU\n______________|||_:||:|||||___:||||\n______________ACU_UUGUUUACG___GCAGA\n3'-UUU...CUACU___A_________C_______AAG-5'\n_____________|_____________________|\n_____________23____________________3\n |
192 -- 198 |
10 -- 16 |
-17.2827 kcal/mol |
4.89762 kcal/mol |
1.2572 kcal/mol |
185 207@LB@ | |@LB@5'-AAA...CCCUU C UUA AUACA...UCA-3'@LB@ UGA GACGAAUGC UGUCU@LB@ ||| :||:||||| :||||@LB@ ACU UUGUUUACG GCAGA@LB@3'-UUU...CUACU A C AAG-5'@LB@ | |@LB@ 23 3@LB@@LB@@LB@Energy -11.13 kcal/mol@LB@Hybridization Energy -17.2827 kcal/mol@LB@Unfolding Energy - mRNA 4.89762 kcal/mol@LB@Unfolding Energy - sRNA 1.2572 kcal/mol@LB@@LB@Position - mRNA 186 -- 206@LB@Position - sRNA 4 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 10 -- 16@LB@ |
139 |
0.01337 |
0.3104 |
b1255 |
yciC |
-11.25 |
0.074167 |
287 -- 299 |
1 -- 13 |
UPF0259 family inner membrane protein |
|
_____________286___________300\n_____________|_____________|\n5'-AAU...UUGCU__________A__A-3'\n______________AUGUGCGUUU_UC\n______________|||:||||:|_||\n______________UACGCGCAGA_AG\n3'-UUU...UUGUU__________A__-5'\n_____________|____________|\n_____________14___________1\n |
290 -- 296 |
4 -- 10 |
-15.0519 kcal/mol |
2.63141 kcal/mol |
1.17519 kcal/mol |
286 300@LB@ | |@LB@5'-AAU...UUGCU A A-3'@LB@ AUGUGCGUUU UC@LB@ |||:||||:| ||@LB@ UACGCGCAGA AG@LB@3'-UUU...UUGUU A -5'@LB@ | |@LB@ 14 1@LB@@LB@@LB@Energy -11.25 kcal/mol@LB@Hybridization Energy -15.0519 kcal/mol@LB@Unfolding Energy - mRNA 2.63141 kcal/mol@LB@Unfolding Energy - sRNA 1.17519 kcal/mol@LB@@LB@Position - mRNA 287 -- 299@LB@Position - sRNA 1 -- 13@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 4 -- 10@LB@ |
177 |
0.01751 |
0.3104 |
b2900 |
yqfB |
-9.18 |
0.165418 |
52 -- 70 |
1 -- 17 |
UPF0267 family protein |
|
_____________51__________________71\n_____________|___________________|\n5'-UUC...ACGUC________U__GCC_____CCGCC...UCA-3'\n______________ACAAAUGC_CG___CUUUU\n______________||||||||_||___||||:\n______________UGUUUACG_GC___GAAAG\n3'-UUU...ACUAU________C__A_______-5'\n_____________|__________________|\n_____________18_________________1\n |
53 -- 59 |
10 -- 16 |
-13.5578 kcal/mol |
3.13415 kcal/mol |
1.23994 kcal/mol |
51 71@LB@ | |@LB@5'-UUC...ACGUC U GCC CCGCC...UCA-3'@LB@ ACAAAUGC CG CUUUU@LB@ |||||||| || ||||:@LB@ UGUUUACG GC GAAAG@LB@3'-UUU...ACUAU C A -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -13.5578 kcal/mol@LB@Unfolding Energy - mRNA 3.13415 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 52 -- 70@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 10 -- 16@LB@ |
157 |
0.01467 |
0.3104 |
b0906 |
ycaP |
-12.44 |
0.045773 |
54 -- 69 |
5 -- 18 |
UPF0702 family putative inner membrane protein |
|
_____________53_______________70\n_____________|________________|\n5'-AGU...CCGGG_________UU_____AUGAA...UCU-3'\n______________GAUAAAUGU__GCGUC\n______________:|:|||||:__|||||\n______________UUGUUUACG__CGCAG\n3'-UUU...UACUA________________AAAG-5'\n_____________|________________|\n_____________19_______________4\n |
56 -- 62 |
10 -- 16 |
-16.0437 kcal/mol |
2.38303 kcal/mol |
1.2243 kcal/mol |
53 70@LB@ | |@LB@5'-AGU...CCGGG UU AUGAA...UCU-3'@LB@ GAUAAAUGU GCGUC@LB@ :|:|||||: |||||@LB@ UUGUUUACG CGCAG@LB@3'-UUU...UACUA AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -16.0437 kcal/mol@LB@Unfolding Energy - mRNA 2.38303 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 54 -- 69@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 10 -- 16@LB@ |
146 |
0.01406 |
0.3104 |
b3831 |
udp |
-7.35 |
0.318150 |
153 -- 161 |
1 -- 9 |
uridine phosphorylase |
|
_____________152_______162\n_____________|_________|\n5'-AUC...GUAAA_________UGCUU...AGA-3'\n______________GUGUCUUUU\n______________|:||||||:\n______________CGCAGAAAG\n3'-UUU...UUACG_________-5'\n_____________|________|\n_____________10_______1\n |
155 -- 161 |
1 -- 7 |
-10.4616 kcal/mol |
1.99462 kcal/mol |
1.11751 kcal/mol |
152 162@LB@ | |@LB@5'-AUC...GUAAA UGCUU...AGA-3'@LB@ GUGUCUUUU@LB@ |:||||||:@LB@ CGCAGAAAG@LB@3'-UUU...UUACG -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -7.35 kcal/mol@LB@Hybridization Energy -10.4616 kcal/mol@LB@Unfolding Energy - mRNA 1.99462 kcal/mol@LB@Unfolding Energy - sRNA 1.11751 kcal/mol@LB@@LB@Position - mRNA 153 -- 161@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 1 -- 7@LB@ |
161 |
0.01501 |
0.3104 |
b1709 |
btuD |
-8.32 |
0.227073 |
129 -- 137 |
1 -- 9 |
vitamin B12 ABC transporter ATPase |
|
_____________128_______138\n_____________|_________|\n5'-GCA...AUCCA_________CCCGG...GGC-3'\n______________GCGUUUUUC\n______________||||:||||\n______________CGCAGAAAG\n3'-UUU...UUACG_________-5'\n_____________|________|\n_____________10_______1\n |
131 -- 137 |
1 -- 7 |
-11.771 kcal/mol |
2.3321 kcal/mol |
1.11751 kcal/mol |
128 138@LB@ | |@LB@5'-GCA...AUCCA CCCGG...GGC-3'@LB@ GCGUUUUUC@LB@ ||||:||||@LB@ CGCAGAAAG@LB@3'-UUU...UUACG -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -8.32 kcal/mol@LB@Hybridization Energy -11.771 kcal/mol@LB@Unfolding Energy - mRNA 2.3321 kcal/mol@LB@Unfolding Energy - sRNA 1.11751 kcal/mol@LB@@LB@Position - mRNA 129 -- 137@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 131 -- 137@LB@Position Seed - sRNA 1 -- 7@LB@ |
50 |
0.004415 |
0.299 |
b0752 |
zitB |
-14.03 |
0.023662 |
243 -- 258 |
5 -- 21 |
zinc efflux system |
|
_____________242_______________259\n_____________|_________________|\n5'-CGC...CAGAA____________U____GCUUG...UGG-3'\n______________GAUAAUAA_UGC_CGUC\n______________|||||:||_|||_||||\n______________CUAUUGUU_ACG_GCAG\n3'-UUU...UACUA________U___C____AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
244 -- 250 |
14 -- 20 |
-17.36 kcal/mol |
2.08049 kcal/mol |
1.24955 kcal/mol |
242 259@LB@ | |@LB@5'-CGC...CAGAA U GCUUG...UGG-3'@LB@ GAUAAUAA UGC CGUC@LB@ |||||:|| ||| ||||@LB@ CUAUUGUU ACG GCAG@LB@3'-UUU...UACUA U C AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -14.03 kcal/mol@LB@Hybridization Energy -17.36 kcal/mol@LB@Unfolding Energy - mRNA 2.08049 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 243 -- 258@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 14 -- 20@LB@ |