Input and runtime details for job 7437261 (precomputed example)
Input
Job ID 7437261 (server version 4.3.0)
Job Submitted & Queued | @ Mon Aug 08 10:13:07 CEST 2016 | ||
metaMIR Started | @ Mon Aug 08 10:13:09 CEST 2016 | ||
metaMIR Finished & Post-Processing | @ Mon Aug 08 10:13:45 CEST 2016 | ||
Job Completed | @ Mon Aug 08 10:13:45 CEST 2016 |
DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=7437261&toolName=metaMIR ( 30 days expiry )
Description of the job
example1
An example of a standard analysis in metaMIR, where the prediction is conducted such that all genes are potential targets for down-regulation by the returned miRNAs.
Output download complete results [zip]
Result table
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Sort by selecting a column name.
Rows: 1-10
11-20
21-30
31-40
41-50
51-60
61-70
71-80
81-90
91-100
101-110
111-120
121-130
131-140
141-150
151-160
161-170
171-180
181-190
191-200
201-210
211-220
221-230
231-240
241-250
251-260
261-266
all
miRNA | Final Score | Positive Combo | Positive Score | Positive Group | Positive List |
---|---|---|---|---|---|
hsa-miR-153-3p | 1.24 | APC,AXIN2,DVL3,FZD3,FZD6,LRP6 | 1.242 | 6 | L1 |
hsa-miR-130b-3p | 1.24 | AXIN2,FZD3,FZD6,LEF1,LRP6,TCF7L1 | 1.238 | 6 | L1 |
hsa-miR-3189-5p | 1.23 | APC,AXIN1,GSK3B,LEF1,LRP5,LRP6 | 1.232 | 6 | L1 |
hsa-let-7a-5p | 1.23 | DVL3,FZD3,GSK3B,TCF7L1,TCF7L2,WNT1 | 1.23 | 6 | L1 |
hsa-miR-4325 | 1.22 | APC,AXIN2,DVL1,FZD6,LEF1,TCF7L1 | 1.225 | 6 | L1 |
hsa-let-7a-3p | 1.22 | AXIN2,CTNNB1,DVL2,FZD3,LRP6,TCF7L1 | 1.222 | 6 | L1 |
hsa-miR-4643 | 1.22 | APC,BAMBI,CTNNB1,FZD6,GSK3B,TCF7L1 | 1.221 | 6 | L1 |
hsa-miR-193b-3p | 1.21 | APC,AXIN1,GSK3B,LEF1,LRP5,LRP6 | 1.209 | 6 | L1 |
hsa-miR-582-3p | 1.21 | CTNNB1,DVL2,FZD3,GSK3B,LRP5,TCF7 | 1.208 | 6 | L1 |
hsa-miR-6778-5p | 1.21 | DVL1,DVL3,GSK3B,LRP6,TCF7,TCF7L2 | 1.205 | 6 | L1 |
Result table - repPos
The table is empty.
Result table - clusterPos
The table is empty.
Job resubmission
usability assessment
When using metaMIR please cite :
- Jason A. Davis, Sita J. Saunders, Martin Mann, Rolf Backofen
Combinatorial ensemble miRNA target prediction of co-regulation networks with non-prediction data
Nucleic Acids Research, 2017, 45 (15), 8745–8757. - Martin Raden, Syed M Ali, Omer S Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen C Lott, Mostafa M Mohamed, Alexander Mattheis, Milad Miladi, Andreas S Richter, Sebastian Will, Joachim Wolff, Patrick R Wright, and Rolf Backofen
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
Nucleic Acids Research, 46(W1), W25-W29, 2018.
Results are computed with metaMIR version 1.0.0 using R 3.2.1