Input and runtime details for job 7437261 (precomputed example)
Input
 List of genes analyzed | APC
AXIN1
AXIN2
BAMBI
CTNNB1
DVL1
DVL2
DVL3
FZD3
FZD6
GSK3B
LEF1
LRP5
LRP6
TCF7
TCF7L1
TCF7L2
WNT1 | ||
| Minimum number of genes per cluster | 5 | ||
| Maximum number of genes per cluster | 20 | ||
| Minimum score to return | 1.1 |
Job ID 7437261 (server version 4.3.0)
 | Job Submitted & Queued | @ Mon Aug 08 10:13:07 CEST 2016 | |
| metaMIR Started | @ Mon Aug 08 10:13:09 CEST 2016 | |
| metaMIR Finished & Post-Processing | @ Mon Aug 08 10:13:45 CEST 2016 | |
| Job Completed | @ Mon Aug 08 10:13:45 CEST 2016 |
DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=7437261&toolName=metaMIR ( 30 days expiry )
Description of the job
example1
An example of a standard analysis in metaMIR, where the prediction is conducted such that all genes are potential targets for down-regulation by the returned miRNAs.
Output
download complete results
[zip]
Result table
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Rows: 1-10
11-20
21-30
31-40
41-50
51-60
61-70
71-80
81-90
91-100
101-110
111-120
121-130
131-140
141-150
151-160
161-170
171-180
181-190
191-200
201-210
211-220
221-230
231-240
241-250
251-260
261-266
all
| miRNA | Final Score | Positive Combo | Positive Score | Positive Group | Positive List |
|---|---|---|---|---|---|
| hsa-miR-3912-3p | 3.93 | APC,AXIN2,CTNNB1,LEF1,LRP6,TCF7L2 | 3.932 | 6 | L1 |
| hsa-miR-4671-5p | 3.27 | AXIN2,DVL1,DVL2,DVL3,TCF7,WNT1 | 3.268 | 6 | L1 |
| hsa-miR-18b-5p | 2.79 | AXIN2,CTNNB1,DVL2,DVL3,FZD3,GSK3B,LRP6,TCF7,WNT1 | 2.793 | 9 | L1 |
| hsa-miR-7154-3p | 2.75 | AXIN1,AXIN2,DVL2,DVL3,GSK3B,LRP6,TCF7L1,WNT1 | 2.754 | 8 | L1 |
| hsa-miR-18a-5p | 2.74 | AXIN2,CTNNB1,DVL2,DVL3,FZD3,GSK3B,TCF7,TCF7L2,WNT1 | 2.736 | 9 | L1 |
| hsa-miR-4781-5p | 2.62 | AXIN1,DVL1,GSK3B,LRP5,TCF7,TCF7L2 | 2.625 | 6 | L1 |
| hsa-miR-675-5p | 2.57 | APC,AXIN1,DVL3,FZD3,GSK3B,LRP5 | 2.574 | 6 | L1 |
| hsa-miR-135b-5p | 2.36 | APC,AXIN2,FZD3,FZD6,GSK3B,LRP5,LRP6,TCF7,TCF7L2 | 2.364 | 9 | L1 |
| hsa-miR-29b-3p | 2.36 | AXIN2,CTNNB1,DVL1,DVL3,FZD3,FZD6,GSK3B,LEF1,LRP6 | 2.36 | 9 | L1 |
| hsa-miR-934 | 2.36 | AXIN1,DVL2,DVL3,FZD3,FZD6,GSK3B | 2.357 | 6 | L1 |
Result table - repPos
The table is empty.
Result table - clusterPos
The table is empty.
Job resubmission
Use the following button if you want to resubmit the job with
altered input or parameterization:
usability assessment
When using metaMIR please cite :
- Jason A. Davis, Sita J. Saunders, Martin Mann, Rolf Backofen
Combinatorial ensemble miRNA target prediction of co-regulation networks with non-prediction data
Nucleic Acids Research, 2017, 45 (15), 8745–8757. - Martin Raden, Syed M Ali, Omer S Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen C Lott, Mostafa M Mohamed, Alexander Mattheis, Milad Miladi, Andreas S Richter, Sebastian Will, Joachim Wolff, Patrick R Wright, and Rolf Backofen
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
Nucleic Acids Research, 46(W1), W25-W29, 2018.
Results are computed with metaMIR version 1.0.0 using R 3.2.1
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