Freiburg RNA Tools
CopraRNA - Results
BIF
IFF
CopraRNA 9907657

Input and runtime details for job 9907657 (precomputed example)

Input Parameters

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100
? Minimal rel. cluster size0.5
? Iterative organism subset analysis (beta)no

Job ID 9907657 (server version trunk)

?Job Submitted & Queued@ Mon Oct 27 19:31:41 CET 2014
?Processing Started@ Mon Oct 27 19:31:51 CET 2014
?CopraRNA Finished & Post-Processing@ Mon Oct 27 22:32:26 CET 2014
?Post-Processing Finished@ Mon Oct 27 22:32:26 CET 2014
?Job Completed@ Mon Oct 27 22:32:42 CET 2014
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=9907657&toolName=CopraRNA ( 30 days expiry )

The job description you specified

MicA

Output download complete results [zip]

Downloadable files

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[txt]
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[txt] [svg]


heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs sampled p-values
1 0 0 b2687 luxS -81.75 0.000000 61 -- 132 1 -- 72 S-ribosylhomocysteine lyase   0
2 3.472e-06 0.0063 b0168 map -16.35 0.009763 228 -- 248 5 -- 21 methionine aminopeptidase   0
3 8.654e-06 0.01047 b2745 truD -15.01 0.017243 54 -- 69 2 -- 17 tRNA(Glu) pseudouridine(13) synthase   0
4 0.000118 0.09942 b2047 wcaJ -13.92 0.027215 200 -- 222 7 -- 21 colanic biosynthesis UDP-glucose lipid carrier transferase   2
5 0.000137 0.09942 b0957 ompA -12.87 0.041963 183 -- 195 8 -- 21 outer membrane protein A (3a;II*;G;d)   0
6 0.0001807 0.1093 b0741 pal -12.85 0.042306 107 -- 115 3 -- 11 peptidoglycan-associated outer membrane lipoprotein   0
7 0.0002475 0.1283 b2748 ftsB -18.77 0.003427 154 -- 190 1 -- 44 cell division protein   0
8 0.0003125 0.1418 b2126 yehU -12.24 0.054312 235 -- 252 1 -- 18 inner membrane putative sensory kinase in two-component system with YehT   0
9 0.0005016 0.1817 b2551 glyA -17.37 0.006284 167 -- 213 7 -- 50 serine hydroxymethyltransferase   0
10 0.0005608 0.1817 b4175 hflC -9.84 0.139119 186 -- 211 5 -- 32 modulator for HflB protease specific for phage lambda cII repressor   0

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

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Results are computed with CopraRNA version 2.0.1