Freiburg RNA Tools
CopraRNA - Results
BIF
IFF
CopraRNA 6527768

Input and runtime details for job 6527768 (precomputed example)

Sequence input

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100

CopraRNA parameters

? Consensus prediction off
? p-value combinationno
? p-value filtering (0=off)0

IntaRNA parameters

? Target folding window size150
? Target max. basepair distance100

Job ID 6527768 (server version trunk)

?Job Submitted & Queued@ Fri Feb 16 15:24:51 CET 2018
?Processing Started@ Fri Feb 16 15:25:20 CET 2018
?CopraRNA Finished & Post-Processing@ Fri Feb 16 20:38:58 CET 2018
?Post-Processing Finished@ Fri Feb 16 20:39:05 CET 2018
?Job Completed@ Fri Feb 16 20:39:38 CET 2018
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=6527768&toolName=CopraRNA ( 30 days expiry )

The job description you specified

MicA


Output download complete results [zip]

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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs
1 0 0 b2687 luxS -86.29 0.000000 61 -- 132 1 -- 72 S-ribosylhomocysteine lyase  
2 9.051e-06 0.01532 b2745 truD -15.77 0.011349 54 -- 69 2 -- 17 tRNA(Glu) pseudouridine(13) synthase  
3 3.559e-05 0.03436 b0168 map -14.62 0.018437 228 -- 248 5 -- 21 methionine aminopeptidase  
4 4.059e-05 0.03436 b2748 ftsB -19.92 0.001892 154 -- 190 1 -- 44 cell division protein  
5 7.362e-05 0.04801 b0741 pal -13.90 0.024968 103 -- 115 3 -- 16 peptidoglycan-associated outer membrane lipoprotein  
6 9.655e-05 0.04801 b4175 hflC -9.47 0.148653 186 -- 211 5 -- 32 HflB protease modulator specific for phage lambda cII repressor  
7 9.926e-05 0.04801 b1113 ldtC -15.69 0.011765 184 -- 223 1 -- 45 L D-transpeptidase linking Lpp to murein  
8 0.000167 0.07068 b0814 ompX -11.11 0.078421 202 -- 223 1 -- 22 outer membrane protein X  
9 0.000195 0.07335 b1830 prc -15.09 0.015143 131 -- 161 7 -- 38 carboxy-terminal protease for penicillin-binding protein 3  
10 0.0002413 0.08171 b2594 rluD -15.70 0.011720 48 -- 64 5 -- 21 23S rRNA pseudouridine(1911 1915 1917) synthase  
11 0.0003246 0.08948 b2299 yfcD -11.11 0.078371 283 -- 295 5 -- 18 putative NUDIX hydrolase  
12 0.0003263 0.08948 b4036 lamB -12.21 0.050157 189 -- 218 8 -- 32 maltose outer membrane porin (maltoporin)  
13 0.0003435 0.08948 b2551 glyA -14.51 0.019315 147 -- 213 7 -- 69 serine hydroxymethyltransferase  
14 0.0004057 0.09812 b0886 cydC -15.95 0.010534 194 -- 211 2 -- 21 glutathione/cysteine ABC transporter export permease/ATPase  
15 0.000461 0.102 b2140 dusC -12.07 0.053129 194 -- 211 3 -- 22 tRNA-dihydrouridine synthase C  
16 0.0004819 0.102 b0957 ompA -13.00 0.036257 182 -- 195 8 -- 22 outer membrane protein A (3a;II*;G;d)  
17 0.0005644 0.1124 b0949 uup -13.14 0.034258 282 -- 297 4 -- 21 replication regulatory ABC-F family DNA-binding ATPase  
18 0.00061 0.1147 b2126 yehU -11.17 0.076396 235 -- 252 1 -- 18 inner membrane putative sensory kinase in two-component system with YehT  
19 0.0006629 0.1181 b2909 ygfB -11.13 0.077732 186 -- 206 4 -- 22 UPF0149 family protein  
20 0.0008552 0.1448 b4137 cutA -9.23 0.162618 220 -- 236 1 -- 16 divalent-cation tolerance protein copper sensitivity  
21 0.0009524 0.1536 b0241 phoE -11.39 0.070016 174 -- 180 5 -- 11 outer membrane phosphoporin protein E b0929 b2215 b1377
22 0.001004 0.1545 b0583 entD -18.10 0.004183 41 -- 63 1 -- 22 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex  
23 0.001384 0.1943 b0399 phoB -10.33 0.106753 53 -- 63 8 -- 18 response regulator in two-component regulatory system with PhoR  
24 0.001508 0.1943 b0150 fhuA -11.07 0.079438 192 -- 210 5 -- 21 ferrichrome outer membrane transporter  
25 0.001519 0.1943 b2817 amiC -17.97 0.004427 110 -- 131 1 -- 21 N-acetylmuramoyl-L-alanine amidase  
26 0.001545 0.1943 b1678 ldtE -10.42 0.102915 208 -- 217 2 -- 11 murein L D-transpeptidase  
27 0.001549 0.1943 b0440 hupB -11.81 0.059023 134 -- 149 5 -- 20 HU DNA-binding transcriptional regulator beta subunit  
28 0.001743 0.2094 b2308 hisQ -15.00 0.015715 1 -- 16 7 -- 21 histidine ABC transporter permease  
29 0.001844 0.2094 b2047 wcaJ -13.26 0.032615 200 -- 222 7 -- 21 colanic biosynthesis UDP-glucose lipid carrier transferase  
30 0.001906 0.2094 b0616 citE -12.56 0.043465 103 -- 116 8 -- 21 citrate lyase citryl-ACP lyase (beta) subunit  
31 0.001974 0.2094 b1080 flgI -10.59 0.096403 87 -- 101 7 -- 21 putative flagellar basal body protein  
32 0.001981 0.2094 b3110 yhaO -10.61 0.095420 268 -- 283 7 -- 23 putative transporter  
33 0.002096 0.2094 b0937 ssuE -11.36 0.070700 201 -- 209 5 -- 13 NAD(P)H-dependent FMN reductase  
34 0.002145 0.2094 b1939 fliG -13.29 0.032191 145 -- 162 6 -- 22 flagellar motor switching and energizing component  
35 0.002165 0.2094 b2714 ascG -14.61 0.018547 188 -- 213 10 -- 30 asc operon transcriptional repressor; prpBC operon repressor  
36 0.002407 0.2206 b2550 yphH -13.17 0.033778 238 -- 251 7 -- 20 putative DNA-binding transcriptional regulator  
37 0.00241 0.2206 b2455 eutE -11.61 0.064061 286 -- 298 3 -- 15 aldehyde oxidoreductase ethanolamine utilization protein  
38 0.002512 0.2224 b0436 tig -7.88 0.265562 192 -- 204 10 -- 21 peptidyl-prolyl cis/trans isomerase (trigger factor)  
39 0.002561 0.2224 b3845 fadA -14.30 0.021162 112 -- 126 5 -- 20 3-ketoacyl-CoA thiolase (thiolase I)  
40 0.002726 0.2279 b1799 dmlR -13.48 0.029707 223 -- 239 2 -- 20 transcriptional activator of dmlA b3060
41 0.00276 0.2279 b0889 lrp -10.49 0.100208 207 -- 221 8 -- 21 leucine-responsive global transcriptional regulator  
42 0.002847 0.2296 b1638 pdxH -9.07 0.172497 29 -- 35 5 -- 11 pyridoxine 5'-phosphate oxidase  
43 0.003009 0.2325 b3429 glgA -8.59 0.206361 152 -- 163 7 -- 22 glycogen synthase  
44 0.003062 0.2325 b3847 pepQ -9.98 0.122201 144 -- 157 8 -- 21 proline dipeptidase  
45 0.00309 0.2325 b0584 fepA -13.78 0.026215 91 -- 106 1 -- 17 ferrienterobactin outer membrane transporter  
46 0.003408 0.2484 b2518 ndk -12.77 0.039848 1 -- 16 7 -- 21 multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase  
47 0.003448 0.2484 b0614 citX -10.13 0.115098 76 -- 91 4 -- 17 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase  
48 0.00405 0.2857 b0409 secF -13.37 0.031213 166 -- 172 5 -- 11 SecYEG protein translocase auxillary subunit  
49 0.004401 0.299 b0093 ftsQ -10.19 0.112476 259 -- 274 4 -- 20 divisome assembly protein membrane anchored protein involved in growth of wall at septum  
50 0.004415 0.299 b0752 zitB -14.03 0.023662 243 -- 258 5 -- 21 zinc efflux system  
51 0.004574 0.3024 b3529 yhjK -9.99 0.121635 195 -- 213 1 -- 18 cyclic-di-GMP phosphodiesterase  
52 0.004683 0.3024 b1130 phoP -12.79 0.039529 186 -- 208 6 -- 31 response regulator in two-component regulatory system with PhoQ  
53 0.004896 0.3024 b3790 wecD -9.15 0.167607 125 -- 139 7 -- 21 TDP-fucosamine acetyltransferase  
54 0.004897 0.3024 b1949 fliQ -8.93 0.181731 208 -- 239 7 -- 38 flagellar biosynthesis protein  
55 0.005043 0.3024 b1625 cnu -10.91 0.084723 38 -- 57 1 -- 21 nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor  
56 0.005155 0.3024 b3091 uxaA -13.05 0.035558 147 -- 159 6 -- 19 altronate hydrolase  
57 0.005155 0.3024 b3091 uxaA -13.05 0.035558 147 -- 159 6 -- 19 altronate hydrolase  
58 0.00518 0.3024 b4068 yjcH -12.19 0.050580 228 -- 240 8 -- 21 DUF485 family inner membrane protein  
59 0.005538 0.3084 b2812 tcdA -16.71 0.007603 29 -- 48 1 -- 19 tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA  
60 0.00555 0.3084 b2062 wza -10.85 0.086669 18 -- 25 4 -- 11 colanic acid export protein; outer membrane auxillary lipoprotein  
61 0.005608 0.3084 b2174 lpxT -9.09 0.171357 170 -- 179 1 -- 10 lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase  
62 0.005646 0.3084 b1242 ychE -13.92 0.024785 141 -- 151 1 -- 11 UPF0056 family inner membrane protein  
63 0.0059 0.3087 b3834 ubiJ -8.76 0.193647 289 -- 295 4 -- 10 aerobic ubiquinone synthesis protein SCP2 family protein  
64 0.005939 0.3087 b3237 argR -9.39 0.153279 85 -- 104 1 -- 19 l-arginine-responsive arginine metabolism regulon transcriptional regulator  
65 0.005951 0.3087 b0064 araC -16.15 0.009664 167 -- 213 8 -- 48 ara regulon transcriptional activator; autorepressor  
66 0.006019 0.3087 b0223 yafJ -7.05 0.351504 68 -- 78 1 -- 10 type 2 glutamine amidotransferase family protein  
67 0.006163 0.3087 b0773 ybhB -10.36 0.105479 214 -- 228 7 -- 20 kinase inhibitor homolog UPF0098 family b0545
68 0.006348 0.3087 b1202 ycgV -6.40 0.429936 233 -- 244 4 -- 18 putative adhesin b2647
69 0.006491 0.3087 b3347 fkpA -11.66 0.062814 96 -- 113 4 -- 22 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)  
70 0.006501 0.3087 b3301 rplO -9.96 0.122936 194 -- 206 8 -- 20 50S ribosomal subunit protein L15  
71 0.006638 0.3087 b3857 mobA -12.61 0.042607 253 -- 264 7 -- 18 molybdopterin-guanine dinucleotide synthase  
72 0.006739 0.3087 b2520 yfhM -8.19 0.237735 190 -- 217 6 -- 30 bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein  
73 0.006809 0.3087 b4146 epmB -12.79 0.039583 278 -- 298 1 -- 22 EF-P-Lys34 lysylation protein; weak lysine 2 3-aminomutase  
74 0.006875 0.3087 b2474 tmcA -10.30 0.108021 196 -- 222 5 -- 31 elongator methionine tRNA (ac4C34) acetyltransferase  
75 0.006972 0.3087 b4348 hsdS -13.63 0.027959 190 -- 211 7 -- 29 specificity determinant for hsdM and hsdR  
76 0.007084 0.3087 b4214 cysQ -5.34 0.578728 11 -- 17 26 -- 32 3'(2') 5'-bisphosphate nucleotidase  
77 0.007102 0.3087 b0832 gsiD -8.78 0.192254 77 -- 85 7 -- 15 glutathione ABC transporter permease  
78 0.007118 0.3087 b1118 lolE -12.65 0.041861 19 -- 36 6 -- 21 lipoprotein-releasing system transmembrane protein  
79 0.007292 0.3087 b0063 araB -12.45 0.045578 14 -- 28 6 -- 20 L-ribulokinase  
80 0.007305 0.3087 b2392 mntH -9.52 0.145914 200 -- 218 5 -- 21 manganese/divalent cation transporter  
81 0.007385 0.3087 b0736 ybgC -11.71 0.061637 220 -- 237 4 -- 21 acyl-CoA thioester hydrolase  
82 0.007621 0.3104 b3388 damX -7.48 0.304490 3 -- 13 8 -- 18 cell division protein that binds to the septal ring  
83 0.007683 0.3104 b4244 pyrI -7.62 0.290375 210 -- 222 10 -- 21 aspartate carbamoyltransferase regulatory subunit  
84 0.008129 0.3104 b2579 grcA -9.71 0.135356 279 -- 291 5 -- 18 autonomous glycyl radical cofactor  
85 0.008151 0.3104 b0914 msbA -12.09 0.052799 181 -- 198 1 -- 18 lipid ABC transporter permease/ATPase  
86 0.008729 0.3104 b4213 cpdB -12.03 0.054140 68 -- 81 8 -- 21 2':3'-cyclic-nucleotide 2'-phosphodiesterase  
87 0.008927 0.3104 b0195 tsaA -8.24 0.234029 220 -- 237 1 -- 18 tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase SAM-dependent  
88 0.008928 0.3104 b0405 queA -8.89 0.184414 201 -- 209 5 -- 13 S-adenosylmethionine:tRNA ribosyltransferase-isomerase  
89 0.009028 0.3104 b0529 folD -8.62 0.203566 239 -- 251 4 -- 17 bifunctional 5 10-methylene-tetrahydrofolate dehydrogenase/ 5 10-methylene-tetrahydrofolate cyclohydrolase  
90 0.009145 0.3104 b1079 flgH -6.81 0.379144 179 -- 204 10 -- 38 flagellar protein of basal-body outer-membrane L ring  
91 0.009339 0.3104 b2562 yfhL -11.62 0.063873 146 -- 160 6 -- 20 putative 4Fe-4S cluster-containing protein  
92 0.009361 0.3104 b3652 recG -7.88 0.265686 265 -- 278 7 -- 20 ATP-dependent DNA helicase  
93 0.009444 0.3104 b3822 recQ -7.42 0.310549 176 -- 212 9 -- 45 ATP-dependent DNA helicase  
94 0.009498 0.3104 b4198 ulaF -10.74 0.090813 136 -- 150 6 -- 20 L-ribulose 5-phosphate 4-epimerase  
95 0.009629 0.3104 b0781 moaA -11.57 0.065137 257 -- 279 1 -- 21 molybdopterin biosynthesis protein A  
96 0.009671 0.3104 b0941 elfG -12.70 0.041082 222 -- 232 5 -- 15 putative fimbrial-like adhesin protein b3145 b0533
97 0.009805 0.3104 b1306 pspC -10.74 0.090670 128 -- 139 7 -- 18 psp operon transcription co-activator  
98 0.009835 0.3104 b1213 ychQ -13.77 0.026325 164 -- 179 6 -- 23 SIRB family inner membrane protein  
99 0.009943 0.3104 b3405 ompR -10.46 0.101388 231 -- 245 8 -- 21 response regulator in two-component regulatory system with EnvZ  
100 0.01004 0.3104 b3166 truB -9.42 0.151044 113 -- 128 5 -- 18 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase  
101 0.01005 0.3104 b3288 fmt -10.27 0.109217 249 -- 255 5 -- 11 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase  
102 0.01008 0.3104 b3500 gor -8.16 0.240292 285 -- 295 4 -- 15 glutathione oxidoreductase  
103 0.01026 0.3104 b1083 flgL -8.46 0.215699 195 -- 209 5 -- 21 flagellar hook-filament junction protein  
104 0.01032 0.3104 b1714 pheS -13.82 0.025875 273 -- 287 5 -- 21 phenylalanine tRNA synthetase alpha subunit  
105 0.01074 0.3104 b3791 wecE -13.91 0.024834 1 -- 12 7 -- 18 TDP-4-oxo-6-deoxy-D-glucose transaminase  
106 0.0109 0.3104 b2510 yfgJ -10.53 0.098521 243 -- 261 5 -- 21 DUF1407 family protein  
107 0.01107 0.3104 b0723 sdhA -7.08 0.348281 169 -- 200 7 -- 42 succinate dehydrogenase flavoprotein subunit  
108 0.01118 0.3104 b2565 recO -9.71 0.135448 294 -- 300 5 -- 11 gap repair protein  
109 0.01118 0.3104 b3195 mlaF -11.81 0.058997 89 -- 105 1 -- 18 ABC transporter maintaining OM lipid asymmetry ATP-binding protein  
110 0.01118 0.3104 b1726 yniB -10.98 0.082506 169 -- 185 3 -- 23 putative inner membrane protein  
111 0.01125 0.3104 b0102 zapD -10.07 0.117779 99 -- 113 8 -- 22 FtsZ stabilizer  
112 0.01125 0.3104 b2515 ispG -10.24 0.110168 132 -- 140 4 -- 12 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase  
113 0.01159 0.3104 b1279 yciS -9.20 0.164515 90 -- 101 6 -- 18 DUF1049 family inner membrane protein function unknown  
114 0.01161 0.3104 b3392 hofP -8.60 0.204995 138 -- 147 1 -- 11 DNA catabolic protein  
115 0.01182 0.3104 b3367 nirC -10.39 0.104055 218 -- 233 4 -- 19 nitrite transporter  
116 0.01184 0.3104 b1218 chaC -12.45 0.045440 10 -- 29 8 -- 30 cation transport regulator  
117 0.01191 0.3104 b2137 yohF -11.08 0.079147 231 -- 259 5 -- 35 putative oxidoreductase  
118 0.01199 0.3104 b2573 rpoE -10.72 0.091300 77 -- 87 8 -- 18 RNA polymerase sigma E factor  
119 0.01215 0.3104 b3691 dgoT -8.17 0.239341 58 -- 68 8 -- 21 D-galactonate transporter  
120 0.01222 0.3104 b0916 ycaQ -9.32 0.156865 225 -- 243 1 -- 17 DUF1006 family protein with C-terminal wHTH domain  
121 0.01226 0.3104 b3209 elbB -12.57 0.043302 225 -- 240 4 -- 18 isoprenoid biosynthesis protein with amidotransferase-like domain  
122 0.01233 0.3104 b3599 mtlA -8.56 0.208645 247 -- 281 4 -- 32 mannitol-specific PTS enzyme: IIA IIB and IIC components  
123 0.01235 0.3104 b0097 secM -7.65 0.286972 189 -- 203 7 -- 21 regulator of secA translation  
124 0.0124 0.3104 b1860 ruvB -8.20 0.236824 252 -- 265 8 -- 20 ATP-dependent DNA helicase component of RuvABC resolvasome  
125 0.01241 0.3104 b0002 thrA -8.21 0.235915 191 -- 205 9 -- 21 Bifunctional aspartokinase/homoserine dehydrogenase 1  
126 0.01241 0.3104 b4379 yjjW -11.82 0.058804 207 -- 217 8 -- 18 putative pyruvate formate lyase activating enzyme  
127 0.01249 0.3104 b2964 nupG -12.57 0.043346 150 -- 164 1 -- 16 nucleoside transporter b2406
128 0.01258 0.3104 b0677 nagA -7.18 0.336330 272 -- 297 1 -- 22 N-acetylglucosamine-6-phosphate deacetylase  
129 0.01261 0.3104 b3025 qseB -10.92 0.084347 141 -- 152 5 -- 17 quorum sensing DNA-binding response regulator in two-component regulatory system with QseC  
130 0.01263 0.3104 b1952 dsrB -7.17 0.338083 230 -- 240 7 -- 18 uncharacterized protein  
131 0.01264 0.3104 b3412 bioH -11.05 0.080071 12 -- 32 7 -- 31 pimeloyl-ACP methyl ester carboxylesterase  
132 0.01286 0.3104 b3176 glmM -8.35 0.224806 246 -- 258 8 -- 20 phosphoglucosamine mutase  
133 0.01287 0.3104 b3179 rlmE -8.60 0.205247 24 -- 43 1 -- 17 23S rRNA U2552 2'-O-ribose methyltransferase SAM-dependent  
134 0.01294 0.3104 b2234 nrdA -13.57 0.028625 217 -- 231 7 -- 22 ribonucleoside-diphosphate reductase 1 alpha subunit  
135 0.01297 0.3104 b3409 feoB -9.25 0.161231 74 -- 82 5 -- 13 ferrous iron transporter protein B and GTP-binding protein; membrane protein  
136 0.01311 0.3104 b0694 kdpE -14.36 0.020608 275 -- 287 2 -- 14 response regulator in two-component regulatory system with KdpD  
137 0.01327 0.3104 b3858 yihD -10.36 0.105347 5 -- 11 5 -- 11 DUF1040 protein YihD  
138 0.01331 0.3104 b2897 sdhE -11.73 0.060976 261 -- 284 1 -- 21 flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair  
139 0.01337 0.3104 b1255 yciC -11.25 0.074167 287 -- 299 1 -- 13 UPF0259 family inner membrane protein  
140 0.01344 0.3104 b2388 glk -4.25 0.738023 201 -- 214 10 -- 20 glucokinase  
141 0.01345 0.3104 b3311 rpsQ -8.13 0.242987 140 -- 150 8 -- 18 30S ribosomal subunit protein S17  
142 0.01346 0.3104 b0729 sucD -11.71 0.061414 39 -- 57 3 -- 21 succinyl-CoA synthetase NAD(P)-binding alpha subunit  
143 0.01362 0.3104 b3284 smg -7.50 0.302399 64 -- 82 5 -- 21 DUF494 family putative periplasmic protein  
144 0.01383 0.3104 b1135 rluE -11.03 0.080673 174 -- 189 5 -- 20 23S rRNA pseudouridine(2457) synthase  
145 0.01404 0.3104 b0721 sdhC -10.79 0.088833 202 -- 215 9 -- 22 succinate dehydrogenase membrane subunit binds cytochrome b556  
146 0.01406 0.3104 b3831 udp -7.35 0.318150 153 -- 161 1 -- 9 uridine phosphorylase  
147 0.01411 0.3104 b0441 ppiD -10.51 0.099467 81 -- 98 3 -- 21 periplasmic folding chaperone has an inactive PPIase domain  
148 0.01421 0.3104 b2379 alaC -8.54 0.209762 290 -- 297 5 -- 12 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase  
149 0.01422 0.3104 b0415 ribE -7.20 0.333957 258 -- 265 4 -- 11 riboflavin synthase beta chain  
150 0.01436 0.3104 b3951 pflD -11.87 0.057659 67 -- 75 5 -- 13 putative glycine radical domain-containing pyruvate formate-lyase b0823
151 0.01442 0.3104 b1395 paaH -15.43 0.013105 189 -- 216 8 -- 31 3-hydroxyadipyl-CoA dehydrogenase NAD+-dependent  
152 0.01445 0.3104 b0385 yaiC -12.21 0.050169 39 -- 67 12 -- 42 diguanylate cyclase cellulose regualtor  
153 0.0145 0.3104 b3866 yihI -12.31 0.048207 234 -- 252 5 -- 21 activator of Der GTPase  
154 0.01456 0.3104 b2048 cpsG -9.02 0.175967 42 -- 71 4 -- 44 phosphomannomutase  
155 0.0146 0.3104 b2614 grpE -10.46 0.101070 105 -- 125 1 -- 22 heat shock protein  
156 0.01464 0.3104 b4105 phnD -8.45 0.216438 196 -- 209 4 -- 18 phosphonate ABC transporter periplasmic binding protein  
157 0.01467 0.3104 b0906 ycaP -12.44 0.045773 54 -- 69 5 -- 18 UPF0702 family putative inner membrane protein  
158 0.01496 0.3104 b4278 insG -10.00 0.121023 32 -- 48 3 -- 20 IS4 transposase  
159 0.01499 0.3104 b2476 purC -11.66 0.062723 28 -- 49 4 -- 22 phosphoribosylaminoimidazole-succinocarboxamide synthetase  
160 0.015 0.3104 b2022 hisB -11.12 0.077869 165 -- 171 5 -- 11 histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase  
161 0.01501 0.3104 b1709 btuD -8.32 0.227073 129 -- 137 1 -- 9 vitamin B12 ABC transporter ATPase  
162 0.01506 0.3104 b0871 poxB -6.02 0.481603 228 -- 255 23 -- 53 pyruvate dehydrogenase thiamine triphosphate-binding FAD-binding  
163 0.0151 0.3104 b1517 lsrF -8.60 0.205199 166 -- 179 8 -- 21 putative autoinducer-2 (AI-2) aldolase  
164 0.0157 0.3104 b1735 chbR -6.99 0.357617 139 -- 145 6 -- 12 repressor of chb operon for N N'-diacetylchitobiose utilization  
165 0.01591 0.3104 b4393 trpR -12.13 0.051953 230 -- 246 5 -- 21 transcriptional repressor tryptophan-binding  
166 0.01595 0.3104 b3560 glyQ -10.24 0.110293 22 -- 29 7 -- 14 glycine tRNA synthetase alpha subunit  
167 0.01599 0.3104 b4220 tamA -9.57 0.142740 193 -- 207 4 -- 21 translocation and assembly module for autotransporter export outer membrane subunit  
168 0.01645 0.3104 b3720 bglH -8.64 0.202347 15 -- 28 9 -- 22 carbohydrate-specific outer membrane porin cryptic  
169 0.01667 0.3104 b3575 yiaK -9.90 0.125874 198 -- 219 8 -- 29 2 3-diketo-L-gulonate reductase NADH-dependent  
170 0.01687 0.3104 b0033 carB -11.35 0.071227 1 -- 15 5 -- 17 carbamoyl-phosphate synthase large subunit  
171 0.01687 0.3104 b1512 lsrR -11.43 0.068975 231 -- 262 7 -- 31 lsr operon transcriptional repressor b4295
172 0.01719 0.3104 b0678 nagB -13.42 0.030481 5 -- 26 1 -- 17 glucosamine-6-phosphate deaminase  
173 0.0173 0.3104 b0145 dksA -10.49 0.099910 175 -- 187 5 -- 21 transcriptional regulator of rRNA transcription; DnaK suppressor protein  
174 0.01734 0.3104 b3470 tusA -9.03 0.174990 268 -- 281 8 -- 22 mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase  
175 0.01743 0.3104 b0921 smtA -12.81 0.039244 146 -- 164 2 -- 20 putative S-adenosyl-L-methionine-dependent methyltransferase  
176 0.01748 0.3104 b0435 bolA -9.78 0.131850 202 -- 220 4 -- 22 stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC  
177 0.01751 0.3104 b2900 yqfB -9.18 0.165418 52 -- 70 1 -- 17 UPF0267 family protein  
178 0.01756 0.3104 b2017 yefM -12.99 0.036476 219 -- 231 5 -- 18 antitoxin of the YoeB-YefM toxin-antitoxin system  
179 0.01766 0.3104 b0377 sbmA -9.49 0.147268 6 -- 15 3 -- 12 peptide antibiotic transporter b1496
180 0.01774 0.3104 b0593 entC -14.03 0.023631 112 -- 128 4 -- 19 isochorismate synthase 1  
181 0.01793 0.3104 b1594 mlc -11.10 0.078496 11 -- 37 1 -- 18 glucosamine anaerobic growth regulon transcriptional repressor; autorepressor  
182 0.01795 0.3104 b0403 malZ -8.22 0.235274 180 -- 211 10 -- 46 maltodextrin glucosidase  
183 0.01807 0.3104 b1508 hipB -7.23 0.331427 238 -- 247 10 -- 19 antitoxin of HipAB toxin-antitoxin system b1299 b1434
184 0.01824 0.3104 b2055 wcaE -6.17 0.461247 221 -- 230 4 -- 12 putative glycosyl transferase  
185 0.01831 0.3104 b3164 pnp -7.42 0.310961 131 -- 137 8 -- 14 polynucleotide phosphorylase/polyadenylase  
186 0.01836 0.3104 b3521 yhjC -9.62 0.140197 158 -- 166 5 -- 13 LysR family putative transcriptional regulator  
187 0.01837 0.3104 b2151 galS -10.59 0.096282 222 -- 228 5 -- 11 galactose- and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor  
188 0.0185 0.3104 b3364 tsgA -7.52 0.300608 282 -- 299 12 -- 29 putative transporter  
189 0.01853 0.3104 b3743 asnC -7.74 0.278830 255 -- 266 5 -- 18 transcriptional activator of asnA; autorepressor  
190 0.01867 0.3104 b0196 rcsF -10.27 0.109081 201 -- 211 2 -- 13 putative outer membrane protein  
191 0.01886 0.3104 b3494 uspB -6.32 0.440313 280 -- 286 5 -- 11 universal stress (ethanol tolerance) protein B  
192 0.01895 0.3104 b3333 gspL -4.89 0.645256 110 -- 132 1 -- 21 general secretory pathway component cryptic  
193 0.01896 0.3104 b3181 greA -10.36 0.105339 194 -- 204 10 -- 20 transcript cleavage factor  
194 0.0191 0.3104 b2698 recX -10.17 0.113250 93 -- 107 8 -- 22 regulatory protein for RecA  
195 0.01912 0.3104 b3910 yiiM -10.43 0.102344 196 -- 205 9 -- 18 6-N-hydroxylaminopurine resistance protein  
196 0.01921 0.3104 b2167 fruA -9.92 0.125082 150 -- 163 5 -- 22 fused fructose-specific PTS enzymes: IIBcomponent/IIC components  
197 0.01929 0.3104 b2185 rplY -8.58 0.206984 8 -- 20 7 -- 19 50S ribosomal subunit protein L25  
198 0.0193 0.3104 b2961 mutY -10.33 0.106403 22 -- 38 1 -- 15 adenine DNA glycosylase  
199 0.01944 0.3104 b3657 yicJ -13.22 0.033173 129 -- 161 8 -- 45 putative transporter  
200 0.0195 0.3104 b3183 obgE -7.01 0.355777 76 -- 83 4 -- 11 GTPase involved in cell partioning and DNA repair  

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

Evolutionary conservation of mRNA targets (alignment generated with Jalview)

Evolutionary conservation of sRNA (alignment generated with Jalview)

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Results are computed with CopraRNA version 2.1.2