Freiburg RNA Tools
CopraRNA - Results
BIF
IFF
CopraRNA 6389137

Input and runtime details for job 6389137 (precomputed example)

Input Parameters

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100
? Minimal rel. cluster size0.5
? Iterative organism subset analysis (beta)no

Job ID 6389137 (server version 3.4.0)

?Job Submitted & Queued@ Mon Oct 27 19:28:31 CET 2014
?Processing Started@ Mon Oct 27 19:28:36 CET 2014
?CopraRNA Finished & Post-Processing@ Mon Oct 27 23:47:49 CET 2014
?Post-Processing Finished@ Mon Oct 27 23:47:49 CET 2014
?Job Completed@ Mon Oct 27 23:48:05 CET 2014
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=6389137&toolName=CopraRNA ( 30 days expiry )

The job description you specified

ArcZ

Output download complete results [zip]

Downloadable files

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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs sampled p-values
1 0 0 b3209 elbB -113.88 0.000000 1 -- 83 1 -- 83 isoprenoid biosynthesis protein with amidotransferase-like domain   0
2 4.809e-09 8.772e-06 b3749 rbsA -19.14 0.001878 43 -- 64 65 -- 86 fused D-ribose transporter subunits of ABC superfamily: ATP-binding components   1
3 6.681e-05 0.08124 b2099 yegU -18.03 0.003179 173 -- 198 64 -- 88 ADP-ribosylglycohydrolase family protein   2
4 0.0004561 0.3328 b2100 yegV -7.39 0.426959 5 -- 14 51 -- 60 putative kinase   3
5 0.001055 0.6416 b2480 bcp -8.58 0.266602 275 -- 290 68 -- 81 peroxiredoxin; thiol peroxidase thioredoxin-dependent   0
6 0.00157 0.7699 b0598 cstA -11.34 0.077353 31 -- 48 28 -- 45 carbon starvation protein involved in peptide utilization; APC peptide transporter family protein   0
7 0.001688 0.7699 b0055 djlA -13.58 0.026712 64 -- 85 6 -- 27 membrane-anchored DnaK co-chaperone DNA-binding protein   0
8 0.002117 0.858 b1261 trpB -13.94 0.022565 88 -- 97 52 -- 61 tryptophan synthase beta subunit   0
9 0.002753 0.9025 b3154 yhbP -8.92 0.230404 164 -- 181 1 -- 17 UPF0306 family protein   0
10 0.004117 0.9025 b0713 ybgL -10.35 0.122342 234 -- 242 53 -- 61 UPF0271 family protein   0

Details of Selected Interaction Download Interaction Details

mRNA

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Results are computed with CopraRNA version 2.0.1