Freiburg RNA Tools
CopraRNA - Results
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IFF
CopraRNA 1786318

Input and runtime details for job 1786318 (precomputed example)

Sequence input

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100

CopraRNA parameters

? Consensus prediction off
? p-value combinationno
? p-value filtering (0=off)0

IntaRNA parameters

? Target folding window size150
? Target max. basepair distance100

Job ID 1786318 (server version trunk)

?Job Submitted & Queued@ Fri Feb 16 15:20:27 CET 2018
?Processing Started@ Fri Feb 16 15:20:56 CET 2018
?CopraRNA Finished & Post-Processing@ Fri Feb 16 22:01:46 CET 2018
?Post-Processing Finished@ Fri Feb 16 22:01:53 CET 2018
?Job Completed@ Fri Feb 16 22:02:22 CET 2018
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=1786318&toolName=CopraRNA ( 30 days expiry )

The job description you specified

ArcZ

Output download complete results [zip]

Downloadable files

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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs
1 0 0 b3209 elbB -118.30 0.000000 1 -- 83 1 -- 83 isoprenoid biosynthesis protein with amidotransferase-like domain  
2 1.572e-09 2.767e-06 b3749 rbsA -20.95 0.000983 43 -- 64 65 -- 86 D-ribose ABC transporter ATPase  
3 3.071e-06 0.003055 b2100 yegV -9.35 0.183884 5 -- 14 51 -- 60 putative kinase  
4 3.471e-06 0.003055 b2099 yegU -19.38 0.001997 173 -- 198 64 -- 88 ADP-ribosylglycohydrolase family protein  
5 5.466e-05 0.03849 b0713 ybgL -10.83 0.096857 234 -- 242 53 -- 61 UPF0271 family protein  
6 0.0001378 0.08054 b3860 dsbA -12.69 0.042007 89 -- 111 55 -- 75 periplasmic protein disulfide isomerase I  
7 0.0001601 0.08054 b1864 yebC -15.40 0.012230 213 -- 249 54 -- 89 UPF0082 family protein  
8 0.000265 0.1166 b1244 oppB -12.83 0.039495 280 -- 295 70 -- 84 oligopeptide ABC transporter permease  
9 0.0003241 0.1198 b1110 ycfJ -9.50 0.172514 224 -- 251 52 -- 76 uncharacterized protein  
10 0.0003497 0.1198 b2023 hisH -14.83 0.015853 226 -- 277 39 -- 86 imidazole glycerol phosphate synthase glutamine amidotransferase subunit  

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

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Results are computed with CopraRNA version 2.1.2