131 |
0.007315 |
0.1966 |
b3824 |
rhtB |
-9.48 |
0.174149 |
77 -- 100 |
63 -- 87 |
homoserine homoserine lactone and S-methyl-methionine efflux pump |
|
_____________76________________________101\n_____________|_________________________|\n5'-ACG...CUUUU______UGA_________U______GCCUC...ACC-3'\n______________UGCUGC___AACAUCGGG__AAUCU\n______________|:||||___||||:|:||__|||||\n______________AUGACG___UUGUGGUCC__UUAGA\n3'-UUU...CGCUU______CGG_________CU_____ACCGA...GUG-5'\n_____________|_________________________|\n_____________88________________________62\n |
88 -- 94 |
70 -- 76 |
-24.9255 kcal/mol |
8.06413 kcal/mol |
7.38606 kcal/mol |
76 101@LB@ | |@LB@5'-ACG...CUUUU UGA U GCCUC...ACC-3'@LB@ UGCUGC AACAUCGGG AAUCU@LB@ |:|||| ||||:|:|| |||||@LB@ AUGACG UUGUGGUCC UUAGA@LB@3'-UUU...CGCUU CGG CU ACCGA...GUG-5'@LB@ | |@LB@ 88 62@LB@@LB@@LB@Energy -9.48 kcal/mol@LB@Hybridization Energy -24.9255 kcal/mol@LB@Unfolding Energy - mRNA 8.06413 kcal/mol@LB@Unfolding Energy - sRNA 7.38606 kcal/mol@LB@@LB@Position - mRNA 77 -- 100@LB@Position - sRNA 63 -- 87@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 70 -- 76@LB@ |
132 |
0.007501 |
0.1993 |
b1947 |
fliO |
-6.89 |
0.474041 |
212 -- 250 |
53 -- 93 |
flagellar biosynthesis protein |
|
_____________211_____________________________________________251\n_____________|_______________________________________________|\n5'-AUG...AACCA______________AAUCUUCC_______UU________________ACUGC...UCG-3'\n______________CGC___UACUGUGC________GCGCCGG_____UCU__GCUGCGCC\n______________|||___|||||:||________:|:||:|_____|||__||||||||\n______________GCG___AUGACGCG________UGUGGUC_____AGA__CGACGCGG\n3'-UUU...CCCAC___CUU________GU_____________CCUUU___AC________CAUUU...GUG-5'\n_____________|_______________________________________________|\n_____________94______________________________________________52\n |
244 -- 250 |
53 -- 59 |
-40.0502 kcal/mol |
16.0889 kcal/mol |
17.0683 kcal/mol |
211 251@LB@ | |@LB@5'-AUG...AACCA AAUCUUCC UU ACUGC...UCG-3'@LB@ CGC UACUGUGC GCGCCGG UCU GCUGCGCC@LB@ ||| |||||:|| :|:||:| ||| ||||||||@LB@ GCG AUGACGCG UGUGGUC AGA CGACGCGG@LB@3'-UUU...CCCAC CUU GU CCUUU AC CAUUU...GUG-5'@LB@ | |@LB@ 94 52@LB@@LB@@LB@Energy -6.89 kcal/mol@LB@Hybridization Energy -40.0502 kcal/mol@LB@Unfolding Energy - mRNA 16.0889 kcal/mol@LB@Unfolding Energy - sRNA 17.0683 kcal/mol@LB@@LB@Position - mRNA 212 -- 250@LB@Position - sRNA 53 -- 93@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 53 -- 59@LB@ |
133 |
0.007533 |
0.1993 |
b2194 |
ccmH |
-11.64 |
0.067570 |
191 -- 199 |
1 -- 9 |
heme lyase CcmH subunit |
|
_____________190_______200\n_____________|_________|\n5'-CUG...UAAGG_________AAUGA...AGU-3'\n______________AGGCCGCAC\n______________|||||||||\n______________UCCGGCGUG\n3'-UUU...AAAAG_________-5'\n_____________|________|\n_____________10_______1\n |
193 -- 199 |
1 -- 7 |
-19.8862 kcal/mol |
2.96679 kcal/mol |
5.10726 kcal/mol |
190 200@LB@ | |@LB@5'-CUG...UAAGG AAUGA...AGU-3'@LB@ AGGCCGCAC@LB@ |||||||||@LB@ UCCGGCGUG@LB@3'-UUU...AAAAG -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -11.64 kcal/mol@LB@Hybridization Energy -19.8862 kcal/mol@LB@Unfolding Energy - mRNA 2.96679 kcal/mol@LB@Unfolding Energy - sRNA 5.10726 kcal/mol@LB@@LB@Position - mRNA 191 -- 199@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 1 -- 7@LB@ |
134 |
0.007678 |
0.1993 |
b3139 |
agaC |
-7.83 |
0.338422 |
255 -- 275 |
57 -- 74 |
N-acetylgalactosamine-specific enzyme IIC component of PTS |
|
_____________254___________________276\n_____________|_____________________|\n5'-AAC...UUGUU_______UUGAU_________GAAGC...CGA-3'\n______________CUGGGGA_____UUUUGGCUG\n______________|::||||_____|:|||||||\n______________GGUCCCU_____AGAACCGAC\n3'-UUU...GUUGU_______UU____________GCGGC...GUG-5'\n_____________|_____________________|\n_____________75____________________56\n |
269 -- 275 |
57 -- 63 |
-21.9136 kcal/mol |
6.09668 kcal/mol |
7.9843 kcal/mol |
254 276@LB@ | |@LB@5'-AAC...UUGUU UUGAU GAAGC...CGA-3'@LB@ CUGGGGA UUUUGGCUG@LB@ |::|||| |:|||||||@LB@ GGUCCCU AGAACCGAC@LB@3'-UUU...GUUGU UU GCGGC...GUG-5'@LB@ | |@LB@ 75 56@LB@@LB@@LB@Energy -7.83 kcal/mol@LB@Hybridization Energy -21.9136 kcal/mol@LB@Unfolding Energy - mRNA 6.09668 kcal/mol@LB@Unfolding Energy - sRNA 7.9843 kcal/mol@LB@@LB@Position - mRNA 255 -- 275@LB@Position - sRNA 57 -- 74@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 57 -- 63@LB@ |
135 |
0.007679 |
0.1993 |
b0096 |
lpxC |
-11.14 |
0.084212 |
289 -- 298 |
76 -- 85 |
UDP-3-O-acyl N-acetylglucosamine deacetylase |
|
_____________288________299\n_____________|__________|\n5'-GAA...ACGCC__________CA-3'\n______________CUGCGCCGGC\n______________|||||||::|\n______________GACGCGGUUG\n3'-UUU...CUUAU__________UGGUC...GUG-5'\n_____________|__________|\n_____________86_________75\n |
292 -- 298 |
76 -- 82 |
-18.1767 kcal/mol |
1.93848 kcal/mol |
5.09564 kcal/mol |
288 299@LB@ | |@LB@5'-GAA...ACGCC CA-3'@LB@ CUGCGCCGGC@LB@ |||||||::|@LB@ GACGCGGUUG@LB@3'-UUU...CUUAU UGGUC...GUG-5'@LB@ | |@LB@ 86 75@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -18.1767 kcal/mol@LB@Unfolding Energy - mRNA 1.93848 kcal/mol@LB@Unfolding Energy - sRNA 5.09564 kcal/mol@LB@@LB@Position - mRNA 289 -- 298@LB@Position - sRNA 76 -- 85@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 76 -- 82@LB@ |
136 |
0.007706 |
0.1993 |
b2188 |
yejM |
-8.60 |
0.250530 |
107 -- 119 |
70 -- 83 |
essential inner membrane DUF3413 domain-containing protein; lipid A production and membrane permeability factor |
|
_____________106____________120\n_____________|______________|\n5'-CGC...CCCCG______________CAAUU...UUG-3'\n______________GC_CCAACGCCAGG\n______________||_|||||:|||||\n______________CG_GGUUGUGGUCC\n3'-UUU...UAUGA__C___________CUUUA...GUG-5'\n_____________|______________|\n_____________84_____________69\n |
113 -- 119 |
70 -- 76 |
-22.9581 kcal/mol |
7.21499 kcal/mol |
7.14463 kcal/mol |
106 120@LB@ | |@LB@5'-CGC...CCCCG CAAUU...UUG-3'@LB@ GC CCAACGCCAGG@LB@ || |||||:|||||@LB@ CG GGUUGUGGUCC@LB@3'-UUU...UAUGA C CUUUA...GUG-5'@LB@ | |@LB@ 84 69@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -22.9581 kcal/mol@LB@Unfolding Energy - mRNA 7.21499 kcal/mol@LB@Unfolding Energy - sRNA 7.14463 kcal/mol@LB@@LB@Position - mRNA 107 -- 119@LB@Position - sRNA 70 -- 83@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 70 -- 76@LB@ |
137 |
0.007754 |
0.1993 |
b4024 |
lysC |
-8.53 |
0.257132 |
131 -- 141 |
73 -- 85 |
lysine-sensitive aspartokinase 3 |
|
_____________130___________142\n_____________|_____________|\n5'-UGA...UCGCU_____________CGUCU...UGC-3'\n______________CUGCGCC__CACC\n______________|||||||__||||\n______________GACGCGG__GUGG\n3'-UUU...CUUAU_______UU____UCCCU...GUG-5'\n_____________|_____________|\n_____________86____________72\n |
131 -- 137 |
79 -- 85 |
-18.3373 kcal/mol |
2.85158 kcal/mol |
6.95176 kcal/mol |
130 142@LB@ | |@LB@5'-UGA...UCGCU CGUCU...UGC-3'@LB@ CUGCGCC CACC@LB@ ||||||| ||||@LB@ GACGCGG GUGG@LB@3'-UUU...CUUAU UU UCCCU...GUG-5'@LB@ | |@LB@ 86 72@LB@@LB@@LB@Energy -8.53 kcal/mol@LB@Hybridization Energy -18.3373 kcal/mol@LB@Unfolding Energy - mRNA 2.85158 kcal/mol@LB@Unfolding Energy - sRNA 6.95176 kcal/mol@LB@@LB@Position - mRNA 131 -- 141@LB@Position - sRNA 73 -- 85@LB@Position Seed - mRNA 131 -- 137@LB@Position Seed - sRNA 79 -- 85@LB@ |
138 |
0.007886 |
0.2012 |
b3991 |
thiG |
-13.21 |
0.033127 |
237 -- 259 |
64 -- 85 |
thiamine biosynthesis ThiGH complex subunit |
|
_____________236______________________260\n_____________|________________________|\n5'-GCA...CACAU____UUA_________________CGCUU...CCG-3'\n______________CUGU___CCGGCA_CAGGGAAAUU\n______________|||:___||::||_|||||||||:\n______________GACG___GGUUGU_GUCCCUUUAG\n3'-UUU...CUUAU____C________G__________AACCG...GUG-5'\n_____________|________________________|\n_____________86_______________________63\n |
253 -- 259 |
64 -- 70 |
-25.8634 kcal/mol |
5.26561 kcal/mol |
7.38387 kcal/mol |
236 260@LB@ | |@LB@5'-GCA...CACAU UUA CGCUU...CCG-3'@LB@ CUGU CCGGCA CAGGGAAAUU@LB@ |||: ||::|| |||||||||:@LB@ GACG GGUUGU GUCCCUUUAG@LB@3'-UUU...CUUAU C G AACCG...GUG-5'@LB@ | |@LB@ 86 63@LB@@LB@@LB@Energy -13.21 kcal/mol@LB@Hybridization Energy -25.8634 kcal/mol@LB@Unfolding Energy - mRNA 5.26561 kcal/mol@LB@Unfolding Energy - sRNA 7.38387 kcal/mol@LB@@LB@Position - mRNA 237 -- 259@LB@Position - sRNA 64 -- 85@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 64 -- 70@LB@ |
139 |
0.008022 |
0.2031 |
b0311 |
betA |
-9.91 |
0.144745 |
36 -- 54 |
64 -- 80 |
choline dehydrogenase a flavoprotein |
|
_____________35__________________55\n_____________|___________________|\n5'-CGU...CUGGA________U____C_____CCCGG...AAG-3'\n______________UCAACACC_GGGG_GAAUC\n______________:|||||||_:|||_:||||\n______________GGUUGUGG_UCCC_UUUAG\n3'-UUU...GACGC___________________AACCG...GUG-5'\n_____________|___________________|\n_____________81__________________63\n |
37 -- 43 |
73 -- 79 |
-20.9821 kcal/mol |
4.03056 kcal/mol |
7.04361 kcal/mol |
35 55@LB@ | |@LB@5'-CGU...CUGGA U C CCCGG...AAG-3'@LB@ UCAACACC GGGG GAAUC@LB@ :||||||| :||| :||||@LB@ GGUUGUGG UCCC UUUAG@LB@3'-UUU...GACGC AACCG...GUG-5'@LB@ | |@LB@ 81 63@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -20.9821 kcal/mol@LB@Unfolding Energy - mRNA 4.03056 kcal/mol@LB@Unfolding Energy - sRNA 7.04361 kcal/mol@LB@@LB@Position - mRNA 36 -- 54@LB@Position - sRNA 64 -- 80@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 73 -- 79@LB@ |
140 |
0.008117 |
0.2031 |
b3221 |
yhcH |
-13.19 |
0.033484 |
158 -- 212 |
34 -- 73 |
DUF386 family protein cupin superfamily |
|
_____________157_____________________________________________________213\n_____________|_______________________________________________________|\n5'-AUC...UGAUG____UUUAC__GG___________UGGCCCAGGGAGAA_______G_________GAAGU...AAG-3'\n______________CAGG_____UU__GGCUGCGCUGU______________AAAUUAU_AUGAUGGGU\n______________||||_____|:__||||||||:||______________|||||||_||||||:||\n______________GUCC_____AG__CCGACGCGGCA______________UUUAAUA_UACUACUCA\n3'-UUU...UUGUG____CUUU___AA________________________________A_________AUGUU...GUG-5'\n_____________|_______________________________________________________|\n_____________74______________________________________________________33\n |
206 -- 212 |
34 -- 40 |
-41.3429 kcal/mol |
18.8865 kcal/mol |
9.26614 kcal/mol |
157 213@LB@ | |@LB@5'-AUC...UGAUG UUUAC GG UGGCCCAGGGAGAA G GAAGU...AAG-3'@LB@ CAGG UU GGCUGCGCUGU AAAUUAU AUGAUGGGU@LB@ |||| |: ||||||||:|| ||||||| ||||||:||@LB@ GUCC AG CCGACGCGGCA UUUAAUA UACUACUCA@LB@3'-UUU...UUGUG CUUU AA A AUGUU...GUG-5'@LB@ | |@LB@ 74 33@LB@@LB@@LB@Energy -13.19 kcal/mol@LB@Hybridization Energy -41.3429 kcal/mol@LB@Unfolding Energy - mRNA 18.8865 kcal/mol@LB@Unfolding Energy - sRNA 9.26614 kcal/mol@LB@@LB@Position - mRNA 158 -- 212@LB@Position - sRNA 34 -- 73@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 34 -- 40@LB@ |