| 141 |
0.008132 |
0.2031 |
b3412 |
bioH |
-10.51 |
0.111302 |
230 -- 255 |
56 -- 74 |
pimeloyl-ACP methyl ester carboxylesterase |
|
_____________229________________________256\n_____________|__________________________|\n5'-GGC...AAAGG________AUGUUC______U_____UGCAC...ACG-3'\n______________UCAGGGGA______AUCUUG_GCUGC\n______________:|||||:|______||||||_|||||\n______________GGUCCCUU______UAGAAC_CGACG\n3'-UUU...GUUGU__________________________CGGCA...GUG-5'\n_____________|__________________________|\n_____________75_________________________55\n |
231 -- 237 |
67 -- 73 |
-25.2186 kcal/mol |
6.56983 kcal/mol |
8.13729 kcal/mol |
229 256@LB@ | |@LB@5'-GGC...AAAGG AUGUUC U UGCAC...ACG-3'@LB@ UCAGGGGA AUCUUG GCUGC@LB@ :|||||:| |||||| |||||@LB@ GGUCCCUU UAGAAC CGACG@LB@3'-UUU...GUUGU CGGCA...GUG-5'@LB@ | |@LB@ 75 55@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -25.2186 kcal/mol@LB@Unfolding Energy - mRNA 6.56983 kcal/mol@LB@Unfolding Energy - sRNA 8.13729 kcal/mol@LB@@LB@Position - mRNA 230 -- 255@LB@Position - sRNA 56 -- 74@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 142 |
0.00825 |
0.2033 |
b3457 |
livH |
-8.25 |
0.287512 |
56 -- 64 |
3 -- 11 |
branched-chain amino acid ABC transporter permease |
|
_____________55________65\n_____________|_________|\n5'-GAU...CGUGA_________UGAAC...ACG-3'\n______________UUGGGCCGC\n______________|::||||||\n______________AGUCCGGCG\n3'-UUU...CAAAA_________UG-5'\n_____________|_________|\n_____________12________2\n |
58 -- 64 |
3 -- 9 |
-16.0849 kcal/mol |
2.23282 kcal/mol |
5.54194 kcal/mol |
55 65@LB@ | |@LB@5'-GAU...CGUGA UGAAC...ACG-3'@LB@ UUGGGCCGC@LB@ |::||||||@LB@ AGUCCGGCG@LB@3'-UUU...CAAAA UG-5'@LB@ | |@LB@ 12 2@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -16.0849 kcal/mol@LB@Unfolding Energy - mRNA 2.23282 kcal/mol@LB@Unfolding Energy - sRNA 5.54194 kcal/mol@LB@@LB@Position - mRNA 56 -- 64@LB@Position - sRNA 3 -- 11@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 143 |
0.008308 |
0.2033 |
b2049 |
cpsB |
-11.81 |
0.062535 |
184 -- 242 |
25 -- 78 |
mannose-1-phosphate guanyltransferase |
|
_____________183_______________________________________________________________243\n_____________|_________________________________________________________________|\n5'-ACA...UAAAU____U_______U____A_______A________CUCUAUCCA__________________U___UCCGG...GCC-3'\n______________GAUA_UCGGGGA_AAUU_UGGC_GC_GUCG_AAA_________GUUGUGAUG____GCAGG_GGC\n______________:|:|_:|:||||_|||:_||||_||_|:||_|||_________:||:|||||____:||:|_|||\n______________UUGU_GGUCCCU_UUAG_ACCG_CG_CGGC_UUU_________UAAUACUAC____UGUUC_CCG\n3'-UUU...CGCGG_________________A____A_______A___AA________________UCAA_________UGUCG...GUG-5'\n_____________|_________________________________________________________________|\n_____________79________________________________________________________________24\n |
227 -- 233 |
37 -- 43 |
-41.0645 kcal/mol |
15.3492 kcal/mol |
13.8987 kcal/mol |
183 243@LB@ | |@LB@5'-ACA...UAAAU U U A A CUCUAUCCA U UCCGG...GCC-3'@LB@ GAUA UCGGGGA AAUU UGGC GC GUCG AAA GUUGUGAUG GCAGG GGC@LB@ :|:| :|:|||| |||: |||| || |:|| ||| :||:||||| :||:| |||@LB@ UUGU GGUCCCU UUAG ACCG CG CGGC UUU UAAUACUAC UGUUC CCG@LB@3'-UUU...CGCGG A A A AA UCAA UGUCG...GUG-5'@LB@ | |@LB@ 79 24@LB@@LB@@LB@Energy -11.81 kcal/mol@LB@Hybridization Energy -41.0645 kcal/mol@LB@Unfolding Energy - mRNA 15.3492 kcal/mol@LB@Unfolding Energy - sRNA 13.8987 kcal/mol@LB@@LB@Position - mRNA 184 -- 242@LB@Position - sRNA 25 -- 78@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 144 |
0.008344 |
0.2033 |
b3159 |
yhbV |
-10.12 |
0.132236 |
144 -- 228 |
15 -- 82 |
U32 peptidase family protein |
|
_____________143______________________________________________________________________________________229\n_____________|________________________________________________________________________________________|\n5'-GUG...AUGUC__AA_____G__AACCAC__________AUAUCA________GGCA_______AAA___AUGAAAUAUUCCUU_______________GGUAC...AUC-3'\n______________CG__GGCAC_CA______UCUUGGC_GC______CCGUAAAU____GUGA_GA___GCA______________AGGGC_CAGUGCUGU\n______________||__::|||_||______|||||||_||______||||||||____:|||_||___:||______________|||||_|||::||||\n______________GC__UUGUG_GU______AGAACCG_CG______GGCAUUUA____UACU_CU___UGU______________UCCCG_GUCGUGACA\n3'-UUU...AUGAC__GG________CCCUUU_______A__C_____________AUAA____A__CAA______________________U_________AAAAG...GUG-5'\n_____________|________________________________________________________________________________________|\n_____________83_______________________________________________________________________________________14\n |
177 -- 183 |
48 -- 54 |
-52.1529 kcal/mol |
19.8598 kcal/mol |
22.1763 kcal/mol |
143 229@LB@ | |@LB@5'-GUG...AUGUC AA G AACCAC AUAUCA GGCA AAA AUGAAAUAUUCCUU GGUAC...AUC-3'@LB@ CG GGCAC CA UCUUGGC GC CCGUAAAU GUGA GA GCA AGGGC CAGUGCUGU@LB@ || ::||| || ||||||| || |||||||| :||| || :|| ||||| |||::||||@LB@ GC UUGUG GU AGAACCG CG GGCAUUUA UACU CU UGU UCCCG GUCGUGACA@LB@3'-UUU...AUGAC GG CCCUUU A C AUAA A CAA U AAAAG...GUG-5'@LB@ | |@LB@ 83 14@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -52.1529 kcal/mol@LB@Unfolding Energy - mRNA 19.8598 kcal/mol@LB@Unfolding Energy - sRNA 22.1763 kcal/mol@LB@@LB@Position - mRNA 144 -- 228@LB@Position - sRNA 15 -- 82@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 145 |
0.008374 |
0.2033 |
b0068 |
thiB |
-7.61 |
0.367750 |
229 -- 244 |
73 -- 87 |
thiamine/thiamine pyrophosphate/thiamine monophosphate ABC transporter periplasmic binding protein |
|
_____________228______________245\n_____________|________________|\n5'-UUU...GCUGU________A_______CGUUU...ACU-3'\n______________UGCUGUGC_CAGCGCC\n______________|:|||:||_||:|:||\n______________AUGACGCG_GUUGUGG\n3'-UUU...CGCUU________________UCCCU...GUG-5'\n_____________|________________|\n_____________88_______________72\n |
230 -- 236 |
80 -- 86 |
-23.483 kcal/mol |
8.91653 kcal/mol |
6.95602 kcal/mol |
228 245@LB@ | |@LB@5'-UUU...GCUGU A CGUUU...ACU-3'@LB@ UGCUGUGC CAGCGCC@LB@ |:|||:|| ||:|:||@LB@ AUGACGCG GUUGUGG@LB@3'-UUU...CGCUU UCCCU...GUG-5'@LB@ | |@LB@ 88 72@LB@@LB@@LB@Energy -7.61 kcal/mol@LB@Hybridization Energy -23.483 kcal/mol@LB@Unfolding Energy - mRNA 8.91653 kcal/mol@LB@Unfolding Energy - sRNA 6.95602 kcal/mol@LB@@LB@Position - mRNA 229 -- 244@LB@Position - sRNA 73 -- 87@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 146 |
0.008611 |
0.2059 |
b3750 |
rbsC |
-8.88 |
0.223197 |
137 -- 159 |
56 -- 77 |
D-ribose ABC transporter permease |
|
_____________136_______________________160\n_____________|_________________________|\n5'-GAU...AGGCC_____________G_UAA_______CGCUG...UCU-3'\n______________AC_CCA_GGAAGU_U___UGGCUGC\n______________||_|||_||||:|_|___|||||||\n______________UG_GGU_CCUUUA_A___ACCGACG\n3'-UUU...GCGGU__U___C______G___________CGGCA...GUG-5'\n_____________|_________________________|\n_____________78________________________55\n |
153 -- 159 |
56 -- 62 |
-22.4095 kcal/mol |
5.11916 kcal/mol |
8.4081 kcal/mol |
136 160@LB@ | |@LB@5'-GAU...AGGCC G UAA CGCUG...UCU-3'@LB@ AC CCA GGAAGU U UGGCUGC@LB@ || ||| ||||:| | |||||||@LB@ UG GGU CCUUUA A ACCGACG@LB@3'-UUU...GCGGU U C G CGGCA...GUG-5'@LB@ | |@LB@ 78 55@LB@@LB@@LB@Energy -8.88 kcal/mol@LB@Hybridization Energy -22.4095 kcal/mol@LB@Unfolding Energy - mRNA 5.11916 kcal/mol@LB@Unfolding Energy - sRNA 8.4081 kcal/mol@LB@@LB@Position - mRNA 137 -- 159@LB@Position - sRNA 56 -- 77@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 147 |
0.008705 |
0.2059 |
b0071 |
leuD |
-8.42 |
0.269085 |
76 -- 114 |
1 -- 54 |
3-isopropylmalate dehydratase small subunit |
|
_____________75_____________________________________________________115\n_____________|______________________________________________________|\n5'-GCC...AGCAA______C_________A__CCGC_________________________G_____GCAUC...AAG-3'\n______________CCGUAA_UU____UGA_GG____CAGGGGCGCGGC___________GG_CGCAC\n______________||||||_||____|||_|:____||:||||:|:||___________||_|||||\n______________GGCAUU_AA____ACU_CU____GUUCCCGUGUCG___________CC_GCGUG\n3'-UUU...GACGC______U__UAAU___A__CAAU____________UGACAAAAAGU__G_____-5'\n_____________|_____________________________________________________|\n_____________55____________________________________________________1\n |
98 -- 104 |
22 -- 28 |
-40.9174 kcal/mol |
15.4198 kcal/mol |
17.077 kcal/mol |
75 115@LB@ | |@LB@5'-GCC...AGCAA C A CCGC G GCAUC...AAG-3'@LB@ CCGUAA UU UGA GG CAGGGGCGCGGC GG CGCAC@LB@ |||||| || ||| |: ||:||||:|:|| || |||||@LB@ GGCAUU AA ACU CU GUUCCCGUGUCG CC GCGUG@LB@3'-UUU...GACGC U UAAU A CAAU UGACAAAAAGU G -5'@LB@ | |@LB@ 55 1@LB@@LB@@LB@Energy -8.42 kcal/mol@LB@Hybridization Energy -40.9174 kcal/mol@LB@Unfolding Energy - mRNA 15.4198 kcal/mol@LB@Unfolding Energy - sRNA 17.077 kcal/mol@LB@@LB@Position - mRNA 76 -- 114@LB@Position - sRNA 1 -- 54@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 148 |
0.008708 |
0.2059 |
b1754 |
ynjB |
-13.35 |
0.031185 |
160 -- 171 |
50 -- 61 |
putative ABC transporter periplasmic binding protein |
|
_____________159__________172\n_____________|____________|\n5'-CCG...UCAGG____________UUCCU...AAA-3'\n______________GGCUGUGCCGUA\n______________|||||:||||||\n______________CCGACGCGGCAU\n3'-UUU...UAGAA____________UUAAU...GUG-5'\n_____________|____________|\n_____________62___________49\n |
165 -- 171 |
50 -- 56 |
-23.078 kcal/mol |
3.86799 kcal/mol |
5.86332 kcal/mol |
159 172@LB@ | |@LB@5'-CCG...UCAGG UUCCU...AAA-3'@LB@ GGCUGUGCCGUA@LB@ |||||:||||||@LB@ CCGACGCGGCAU@LB@3'-UUU...UAGAA UUAAU...GUG-5'@LB@ | |@LB@ 62 49@LB@@LB@@LB@Energy -13.35 kcal/mol@LB@Hybridization Energy -23.078 kcal/mol@LB@Unfolding Energy - mRNA 3.86799 kcal/mol@LB@Unfolding Energy - sRNA 5.86332 kcal/mol@LB@@LB@Position - mRNA 160 -- 171@LB@Position - sRNA 50 -- 61@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 149 |
0.008735 |
0.2059 |
b3088 |
alx |
-8.37 |
0.274530 |
278 -- 288 |
25 -- 35 |
putative membrane-bound redox modulator |
|
_____________277_________289\n_____________|___________|\n5'-GGG...CUGUU___________GUCGU...CAC-3'\n______________GUUGCAGGGGC\n______________|||:||:||||\n______________CAAUGUUCCCG\n3'-UUU...CUACU___________UGUCG...GUG-5'\n_____________|___________|\n_____________36__________24\n |
282 -- 288 |
25 -- 31 |
-18.295 kcal/mol |
6.20791 kcal/mol |
3.71635 kcal/mol |
277 289@LB@ | |@LB@5'-GGG...CUGUU GUCGU...CAC-3'@LB@ GUUGCAGGGGC@LB@ |||:||:||||@LB@ CAAUGUUCCCG@LB@3'-UUU...CUACU UGUCG...GUG-5'@LB@ | |@LB@ 36 24@LB@@LB@@LB@Energy -8.37 kcal/mol@LB@Hybridization Energy -18.295 kcal/mol@LB@Unfolding Energy - mRNA 6.20791 kcal/mol@LB@Unfolding Energy - sRNA 3.71635 kcal/mol@LB@@LB@Position - mRNA 278 -- 288@LB@Position - sRNA 25 -- 35@LB@Position Seed - mRNA 282 -- 288@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 150 |
0.008837 |
0.2059 |
b0453 |
ybaY |
-11.57 |
0.069675 |
268 -- 294 |
71 -- 94 |
outer membrane lipoprotein |
|
_____________267_________________________295\n_____________|___________________________|\n5'-AAG...UAAAA___________CA_A____________CUGCAA-3'\n______________GCGCGGAUAUU__G_CGCCAGCACCGG\n______________|||||:|||:|__|_|||||:||||:|\n______________CGCGCUUAUGA__C_GCGGUUGUGGUC\n3'-UUU...CCCCA___________________________CCUUU...GUG-5'\n_____________|___________________________|\n_____________95__________________________70\n |
283 -- 289 |
76 -- 82 |
-36.9875 kcal/mol |
12.3701 kcal/mol |
13.0144 kcal/mol |
267 295@LB@ | |@LB@5'-AAG...UAAAA CA A CUGCAA-3'@LB@ GCGCGGAUAUU G CGCCAGCACCGG@LB@ |||||:|||:| | |||||:||||:|@LB@ CGCGCUUAUGA C GCGGUUGUGGUC@LB@3'-UUU...CCCCA CCUUU...GUG-5'@LB@ | |@LB@ 95 70@LB@@LB@@LB@Energy -11.57 kcal/mol@LB@Hybridization Energy -36.9875 kcal/mol@LB@Unfolding Energy - mRNA 12.3701 kcal/mol@LB@Unfolding Energy - sRNA 13.0144 kcal/mol@LB@@LB@Position - mRNA 268 -- 294@LB@Position - sRNA 71 -- 94@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 76 -- 82@LB@ |
