79 |
0.00332 |
0.1462 |
b1845 |
ptrB |
-10.90 |
0.169644 |
42 -- 70 |
35 -- 70 |
protease II |
|
_____________41____________________________________71\n_____________|_____________________________________|\n5'-UCU...AGAAU________C_____AA____________CU_______UCUGU...AGC-3'\n______________CGCACAGC_AUUUG__________CAGG__GAUUUUC\n______________|:||||||_|||:|__________||||__|||||:|\n______________GUGUGUCG_UAAGC__________GUCC__CUAAAGG\n3'-UUU...CUGAU________U_____AACAAAGUGA____C________UACGA...GCA-5'\n_____________|_____________________________________|\n_____________71____________________________________34\n |
64 -- 70 |
35 -- 41 |
-24.5069 kcal/mol |
8.82337 kcal/mol |
4.7817 kcal/mol |
41 71@LB@ | |@LB@5'-UCU...AGAAU C AA CU UCUGU...AGC-3'@LB@ CGCACAGC AUUUG CAGG GAUUUUC@LB@ |:|||||| |||:| |||| |||||:|@LB@ GUGUGUCG UAAGC GUCC CUAAAGG@LB@3'-UUU...CUGAU U AACAAAGUGA C UACGA...GCA-5'@LB@ | |@LB@ 71 34@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -24.5069 kcal/mol@LB@Unfolding Energy - mRNA 8.82337 kcal/mol@LB@Unfolding Energy - sRNA 4.7817 kcal/mol@LB@@LB@Position - mRNA 42 -- 70@LB@Position - sRNA 35 -- 70@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 35 -- 41@LB@ |
80 |
0.003376 |
0.1462 |
b3098 |
yqjD |
-10.12 |
0.233597 |
155 -- 204 |
31 -- 75 |
membrane-anchored ribosome-binding protein |
|
_____________154_________________________________________________205\n_____________|___________________________________________________|\n5'-UCA...CGCGC______UA__UCA____A___CACUAC_______CCU__A__AAA______CGAAA...AAG-3'\n______________GACUAC__AC___CAAU__GU______UUACUCA___GG_GA___CUAUGU\n______________||||||__||___||||__||______|:|||||___||_||___|:|||:\n______________CUGAUG__UG___GUUA__CA______AGUGAGU___CC_CU___GGUACG\n3'-UUU...CGUUU______UG__UC_____AG__ACAA_________C_______AAA______AAUAU...GCA-5'\n_____________|___________________________________________________|\n_____________76__________________________________________________30\n |
181 -- 187 |
45 -- 51 |
-24.4421 kcal/mol |
7.05998 kcal/mol |
7.26183 kcal/mol |
154 205@LB@ | |@LB@5'-UCA...CGCGC UA UCA A CACUAC CCU A AAA CGAAA...AAG-3'@LB@ GACUAC AC CAAU GU UUACUCA GG GA CUAUGU@LB@ |||||| || |||| || |:||||| || || |:|||:@LB@ CUGAUG UG GUUA CA AGUGAGU CC CU GGUACG@LB@3'-UUU...CGUUU UG UC AG ACAA C AAA AAUAU...GCA-5'@LB@ | |@LB@ 76 30@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -24.4421 kcal/mol@LB@Unfolding Energy - mRNA 7.05998 kcal/mol@LB@Unfolding Energy - sRNA 7.26183 kcal/mol@LB@@LB@Position - mRNA 155 -- 204@LB@Position - sRNA 31 -- 75@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 45 -- 51@LB@ |
81 |
0.003429 |
0.1462 |
b0413 |
nrdR |
-16.32 |
0.009130 |
136 -- 177 |
33 -- 64 |
Nrd regulon repressor |
|
_____________135_________________________________________178\n_____________|___________________________________________|\n5'-AGG...GUUGC__C_________A___UCAG_______UAAAAUA_________UAACC...UGU-3'\n______________GC__UUUGUUGU_UCG____UUCAGGG_______GAUUUCCGU\n______________||__||:|||||_||:____:||||||_______|||||||:|\n______________CG__AAGCAACA_AGU____GAGUCCC_______CUAAAGGUA\n3'-UUU...UGUGU__UU________A______________________________CGAAU...GCA-5'\n_____________|___________________________________________|\n_____________65__________________________________________32\n |
171 -- 177 |
33 -- 39 |
-28.4719 kcal/mol |
7.3911 kcal/mol |
4.76435 kcal/mol |
135 178@LB@ | |@LB@5'-AGG...GUUGC C A UCAG UAAAAUA UAACC...UGU-3'@LB@ GC UUUGUUGU UCG UUCAGGG GAUUUCCGU@LB@ || ||:||||| ||: :|||||| |||||||:|@LB@ CG AAGCAACA AGU GAGUCCC CUAAAGGUA@LB@3'-UUU...UGUGU UU A CGAAU...GCA-5'@LB@ | |@LB@ 65 32@LB@@LB@@LB@Energy -16.32 kcal/mol@LB@Hybridization Energy -28.4719 kcal/mol@LB@Unfolding Energy - mRNA 7.3911 kcal/mol@LB@Unfolding Energy - sRNA 4.76435 kcal/mol@LB@@LB@Position - mRNA 136 -- 177@LB@Position - sRNA 33 -- 64@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 33 -- 39@LB@ |
82 |
0.00343 |
0.1462 |
b4043 |
lexA |
-10.80 |
0.176998 |
163 -- 196 |
40 -- 72 |
transcriptional repressor of SOS regulon |
|
_____________162________________________________197\n_____________|__________________________________|\n5'-CGC...GUAUA___U_______UAAC___AUAUA___C_______CGGAA...AGC-3'\n______________UAC_CACAGCA____UGU_____CAC_CAGGGGG\n______________|||_|||||||____:||_____|||_||||||:\n______________AUG_GUGUCGU____GCA_____GUG_GUCCCCU\n3'-UUU...UUCUG___U_______UAA____ACAAA___A_______AAAGG...GCA-5'\n_____________|__________________________________|\n_____________73_________________________________39\n |
190 -- 196 |
40 -- 46 |
-30.123 kcal/mol |
14.5591 kcal/mol |
4.76217 kcal/mol |
162 197@LB@ | |@LB@5'-CGC...GUAUA U UAAC AUAUA C CGGAA...AGC-3'@LB@ UAC CACAGCA UGU CAC CAGGGGG@LB@ ||| ||||||| :|| ||| ||||||:@LB@ AUG GUGUCGU GCA GUG GUCCCCU@LB@3'-UUU...UUCUG U UAA ACAAA A AAAGG...GCA-5'@LB@ | |@LB@ 73 39@LB@@LB@@LB@Energy -10.80 kcal/mol@LB@Hybridization Energy -30.123 kcal/mol@LB@Unfolding Energy - mRNA 14.5591 kcal/mol@LB@Unfolding Energy - sRNA 4.76217 kcal/mol@LB@@LB@Position - mRNA 163 -- 196@LB@Position - sRNA 40 -- 72@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 40 -- 46@LB@ |
83 |
0.003448 |
0.1462 |
b4231 |
yjfF |
-16.06 |
0.010834 |
60 -- 72 |
39 -- 51 |
putative sugar ABC transporter permease |
|
_____________59____________73\n_____________|_____________|\n5'-CGG...GCUGA_____________GAACA...GAG-3'\n______________UUAUUCAGGGGAU\n______________|:|:|||||||||\n______________AGUGAGUCCCCUA\n3'-UUU...AACAA_____________AAGGU...GCA-5'\n_____________|_____________|\n_____________52____________38\n |
66 -- 72 |
39 -- 45 |
-20.8743 kcal/mol |
3.02031 kcal/mol |
1.79807 kcal/mol |
59 73@LB@ | |@LB@5'-CGG...GCUGA GAACA...GAG-3'@LB@ UUAUUCAGGGGAU@LB@ |:|:|||||||||@LB@ AGUGAGUCCCCUA@LB@3'-UUU...AACAA AAGGU...GCA-5'@LB@ | |@LB@ 52 38@LB@@LB@@LB@Energy -16.06 kcal/mol@LB@Hybridization Energy -20.8743 kcal/mol@LB@Unfolding Energy - mRNA 3.02031 kcal/mol@LB@Unfolding Energy - sRNA 1.79807 kcal/mol@LB@@LB@Position - mRNA 60 -- 72@LB@Position - sRNA 39 -- 51@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 39 -- 45@LB@ |
84 |
0.003656 |
0.1509 |
b0827 |
moeA |
-7.84 |
0.503176 |
157 -- 203 |
32 -- 75 |
molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein |
|
_____________156_______________________________________________204\n_____________|_________________________________________________|\n5'-AUU...UUUCU_______AUA___A______AUU___CC____G____A_U_________GAAUU...UAC-3'\n______________GAC_AUA___GGC_AAUUCG___UUG__UC_C_CAGG_G_GUUUUCAUG\n______________|||_|:|___:||_||||||___|||__||_|_||||_|_:|||:||||\n______________CUG_UGU___UCG_UUAAGC___AAC__AG_G_GUCC_C_UAAAGGUAC\n3'-UUU...CGUUU___A___GUG________________AA__U_A______C_________GAAUA...GCA-5'\n_____________|_________________________________________________|\n_____________76________________________________________________31\n |
197 -- 203 |
32 -- 38 |
-28.9008 kcal/mol |
13.8106 kcal/mol |
7.24967 kcal/mol |
156 204@LB@ | |@LB@5'-AUU...UUUCU AUA A AUU CC G A U GAAUU...UAC-3'@LB@ GAC AUA GGC AAUUCG UUG UC C CAGG G GUUUUCAUG@LB@ ||| |:| :|| |||||| ||| || | |||| | :|||:||||@LB@ CUG UGU UCG UUAAGC AAC AG G GUCC C UAAAGGUAC@LB@3'-UUU...CGUUU A GUG AA U A C GAAUA...GCA-5'@LB@ | |@LB@ 76 31@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -28.9008 kcal/mol@LB@Unfolding Energy - mRNA 13.8106 kcal/mol@LB@Unfolding Energy - sRNA 7.24967 kcal/mol@LB@@LB@Position - mRNA 157 -- 203@LB@Position - sRNA 32 -- 75@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 32 -- 38@LB@ |
85 |
0.003677 |
0.1509 |
b0813 |
rhtA |
-9.71 |
0.273689 |
106 -- 123 |
34 -- 46 |
threonine and homoserine efflux system |
|
_____________105________________124\n_____________|__________________|\n5'-CAG...CAAAA_______AAAUU______ACAAA...CAC-3'\n______________CGGGGGA_____UUUUCA\n______________|:|||||_____|||:||\n______________GUCCCCU_____AAAGGU\n3'-UUU...AGUGA__________________ACGAA...GCA-5'\n_____________|__________________|\n_____________47_________________33\n |
106 -- 112 |
40 -- 46 |
-14.6812 kcal/mol |
3.4305 kcal/mol |
1.54427 kcal/mol |
105 124@LB@ | |@LB@5'-CAG...CAAAA AAAUU ACAAA...CAC-3'@LB@ CGGGGGA UUUUCA@LB@ |:||||| |||:||@LB@ GUCCCCU AAAGGU@LB@3'-UUU...AGUGA ACGAA...GCA-5'@LB@ | |@LB@ 47 33@LB@@LB@@LB@Energy -9.71 kcal/mol@LB@Hybridization Energy -14.6812 kcal/mol@LB@Unfolding Energy - mRNA 3.4305 kcal/mol@LB@Unfolding Energy - sRNA 1.54427 kcal/mol@LB@@LB@Position - mRNA 106 -- 123@LB@Position - sRNA 34 -- 46@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 40 -- 46@LB@ |
86 |
0.003687 |
0.1509 |
b0774 |
bioA |
-10.95 |
0.166636 |
92 -- 152 |
44 -- 98 |
7 8-diaminopelargonic acid synthase PLP-dependent |
|
_____________91_____________________________________________________________153\n_____________|______________________________________________________________|\n5'-ACG...ACAAU_____G______C____A__CAU______UCUCCAAA___U__UU_________A_______UGUAG...AAG-3'\n______________GUCCA_CGUGGG_GGUG_GC___GGGGCU________ACG_GU__UUUGUUGUU__AUUCGG\n______________|:|||_||||||_|:||_||___::|:||________||:_|:__||:||||||__|:||:|\n______________CGGGU_GCACCC_CUAC_CG___UUCUGA________UGU_CG__AAGCAACAA__UGAGUC\n____3'-UUUUUUU_____A______U____C__U________UGUG__________UU_________AG______CCCUA...GCA-5'\n_____________|______________________________________________________________|\n_____________99_____________________________________________________________43\n |
139 -- 145 |
52 -- 58 |
-48.0349 kcal/mol |
20.1482 kcal/mol |
16.9429 kcal/mol |
91 153@LB@ | |@LB@5'-ACG...ACAAU G C A CAU UCUCCAAA U UU A UGUAG...AAG-3'@LB@ GUCCA CGUGGG GGUG GC GGGGCU ACG GU UUUGUUGUU AUUCGG@LB@ |:||| |||||| |:|| || ::|:|| ||: |: ||:|||||| |:||:|@LB@ CGGGU GCACCC CUAC CG UUCUGA UGU CG AAGCAACAA UGAGUC@LB@ 3'-UUUUUUU A U C U UGUG UU AG CCCUA...GCA-5'@LB@ | |@LB@ 99 43@LB@@LB@@LB@Energy -10.95 kcal/mol@LB@Hybridization Energy -48.0349 kcal/mol@LB@Unfolding Energy - mRNA 20.1482 kcal/mol@LB@Unfolding Energy - sRNA 16.9429 kcal/mol@LB@@LB@Position - mRNA 92 -- 152@LB@Position - sRNA 44 -- 98@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 52 -- 58@LB@ |
87 |
0.003844 |
0.1538 |
b3124 |
garK |
-12.12 |
0.097757 |
2 -- 34 |
58 -- 88 |
glycerate kinase I |
|
_____________1_________________________________35\n_____________|_________________________________|\n__________5'-U_______AU_____C______A____A______AGGAA...AUG-3'\n______________GGAGAUG__GCAGG_ACUGCG_GCAG_UGGUUU\n______________|||||||__|||::_|||:|:_:|||_:::||:\n______________CCUCUAC__CGUUU_UGAUGU_UGUC_GUUAAG\n3'-UUU...AGCAC_______C______C______G___________CAACA...GCA-5'\n_____________|_________________________________|\n_____________89________________________________57\n |
2 -- 8 |
82 -- 88 |
-28.4892 kcal/mol |
6.08629 kcal/mol |
10.2803 kcal/mol |
1 35@LB@ | |@LB@ 5'-U AU C A A AGGAA...AUG-3'@LB@ GGAGAUG GCAGG ACUGCG GCAG UGGUUU@LB@ ||||||| |||:: |||:|: :||| :::||:@LB@ CCUCUAC CGUUU UGAUGU UGUC GUUAAG@LB@3'-UUU...AGCAC C C G CAACA...GCA-5'@LB@ | |@LB@ 89 57@LB@@LB@@LB@Energy -12.12 kcal/mol@LB@Hybridization Energy -28.4892 kcal/mol@LB@Unfolding Energy - mRNA 6.08629 kcal/mol@LB@Unfolding Energy - sRNA 10.2803 kcal/mol@LB@@LB@Position - mRNA 2 -- 34@LB@Position - sRNA 58 -- 88@LB@Position Seed - mRNA 2 -- 8@LB@Position Seed - sRNA 82 -- 88@LB@ |
88 |
0.003962 |
0.1538 |
b3084 |
rlmG |
-11.78 |
0.115170 |
185 -- 197 |
40 -- 51 |
23S rRNA m(2)G1835 methyltransferase SAM-dependent |
|
_____________184___________198\n_____________|_____________|\n5'-UGU...UUUUA_________A___CCGAU...AAU-3'\n______________UCAUUCAGG_GGG\n______________|||:|||||_||:\n______________AGUGAGUCC_CCU\n3'-UUU...AACAA_____________AAAGG...GCA-5'\n_____________|_____________|\n_____________52____________39\n |
187 -- 193 |
43 -- 49 |
-16.9089 kcal/mol |
3.37488 kcal/mol |
1.76028 kcal/mol |
184 198@LB@ | |@LB@5'-UGU...UUUUA A CCGAU...AAU-3'@LB@ UCAUUCAGG GGG@LB@ |||:||||| ||:@LB@ AGUGAGUCC CCU@LB@3'-UUU...AACAA AAAGG...GCA-5'@LB@ | |@LB@ 52 39@LB@@LB@@LB@Energy -11.78 kcal/mol@LB@Hybridization Energy -16.9089 kcal/mol@LB@Unfolding Energy - mRNA 3.37488 kcal/mol@LB@Unfolding Energy - sRNA 1.76028 kcal/mol@LB@@LB@Position - mRNA 185 -- 197@LB@Position - sRNA 40 -- 51@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 43 -- 49@LB@ |