5 |
9.512e-06 |
0.006694 |
b4006 |
purH |
-17.40 |
0.004319 |
188 -- 204 |
31 -- 46 |
IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase |
|
_____________187_______________205\n_____________|_________________|\n5'-GUA...AAAUC__________A______AACAA...AGC-3'\n______________CAGGGGAUUU_CCAUGC\n______________||||||||||_||||||\n______________GUCCCCUAAA_GGUACG\n3'-UUU...AGUGA_________________AAUAU...GCA-5'\n_____________|_________________|\n_____________47________________30\n |
191 -- 197 |
37 -- 43 |
-27.6893 kcal/mol |
6.33421 kcal/mol |
3.95768 kcal/mol |
187 205@LB@ | |@LB@5'-GUA...AAAUC A AACAA...AGC-3'@LB@ CAGGGGAUUU CCAUGC@LB@ |||||||||| ||||||@LB@ GUCCCCUAAA GGUACG@LB@3'-UUU...AGUGA AAUAU...GCA-5'@LB@ | |@LB@ 47 30@LB@@LB@@LB@Energy -17.40 kcal/mol@LB@Hybridization Energy -27.6893 kcal/mol@LB@Unfolding Energy - mRNA 6.33421 kcal/mol@LB@Unfolding Energy - sRNA 3.95768 kcal/mol@LB@@LB@Position - mRNA 188 -- 204@LB@Position - sRNA 31 -- 46@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 37 -- 43@LB@ |
6 |
1.32e-05 |
0.00774 |
b0475 |
hemH |
-21.46 |
0.000115 |
123 -- 162 |
34 -- 75 |
ferrochelatase |
|
_____________122__________________________________________163\n_____________|____________________________________________|\n5'-CGG...GAUUU___CU_U__________A___CUUC________CU_________CUACA...GCG-3'\n______________GAC__C_CACAGCAAUU_GUU____UUC_CUCA_____UUUCCG\n______________|||__|_||||||||||_|||____|||_||||_____|||||:\n______________CUG__G_GUGUCGUUAA_CAA____AAG_GAGU_____AAAGGU\n3'-UUU...CGUUU___AU_U__________G___CA_____U____CCCCU______ACGAA...GCA-5'\n_____________|____________________________________________|\n_____________76___________________________________________33\n |
133 -- 139 |
59 -- 65 |
-29.8744 kcal/mol |
3.60304 kcal/mol |
4.816 kcal/mol |
122 163@LB@ | |@LB@5'-CGG...GAUUU CU U A CUUC CU CUACA...GCG-3'@LB@ GAC C CACAGCAAUU GUU UUC CUCA UUUCCG@LB@ ||| | |||||||||| ||| ||| |||| |||||:@LB@ CUG G GUGUCGUUAA CAA AAG GAGU AAAGGU@LB@3'-UUU...CGUUU AU U G CA U CCCCU ACGAA...GCA-5'@LB@ | |@LB@ 76 33@LB@@LB@@LB@Energy -21.46 kcal/mol@LB@Hybridization Energy -29.8744 kcal/mol@LB@Unfolding Energy - mRNA 3.60304 kcal/mol@LB@Unfolding Energy - sRNA 4.816 kcal/mol@LB@@LB@Position - mRNA 123 -- 162@LB@Position - sRNA 34 -- 75@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 59 -- 65@LB@ |
7 |
1.819e-05 |
0.009142 |
b1849 |
purT |
-22.68 |
0.000026 |
168 -- 199 |
33 -- 74 |
phosphoribosylglycinamide formyltransferase 2 |
|
_____________167________________________________________200\n_____________|__________________________________________|\n5'-UUU...UUUAU________________AA__________________A_____UAUGA...GUC-3'\n______________ACUGCGCGCGG_AAUU___________UCAGGGGAU_UUCGU\n______________|||:|:|:|:|_||||___________|||||||||_|:|:|\n______________UGAUGUGUGUC_UUAA___________AGUCCCCUA_AGGUA\n3'-UUU...GUUUC___________G____GCAACAAAGUG_________A_____CGAAU...GCA-5'\n_____________|__________________________________________|\n_____________75_________________________________________32\n |
187 -- 193 |
39 -- 45 |
-34.2979 kcal/mol |
6.80622 kcal/mol |
4.81602 kcal/mol |
167 200@LB@ | |@LB@5'-UUU...UUUAU AA A UAUGA...GUC-3'@LB@ ACUGCGCGCGG AAUU UCAGGGGAU UUCGU@LB@ |||:|:|:|:| |||| ||||||||| |:|:|@LB@ UGAUGUGUGUC UUAA AGUCCCCUA AGGUA@LB@3'-UUU...GUUUC G GCAACAAAGUG A CGAAU...GCA-5'@LB@ | |@LB@ 75 32@LB@@LB@@LB@Energy -22.68 kcal/mol@LB@Hybridization Energy -34.2979 kcal/mol@LB@Unfolding Energy - mRNA 6.80622 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 168 -- 199@LB@Position - sRNA 33 -- 74@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 39 -- 45@LB@ |
8 |
3.984e-05 |
0.01752 |
b2752 |
cysD |
-11.53 |
0.128779 |
103 -- 132 |
45 -- 74 |
sulfate adenylyltransferase subunit 2 |
|
_____________102____________________________133\n_____________|______________________________|\n5'-GCC...AAGGA_____U___UC_____G__AA_________UUCUC...UCU-3'\n______________ACUAC_CAU__UAAUU_GU__UUUCAUUCG\n______________|||||_||:__:||||_||__|||||:||:\n______________UGAUG_GUG__GUUAA_CA__AAAGUGAGU\n3'-UUU...GUUUC_____U___UC_____G__AC_________CCCCU...GCA-5'\n_____________|______________________________|\n_____________75_____________________________44\n |
126 -- 132 |
45 -- 51 |
-20.8412 kcal/mol |
5.57115 kcal/mol |
3.74056 kcal/mol |
102 133@LB@ | |@LB@5'-GCC...AAGGA U UC G AA UUCUC...UCU-3'@LB@ ACUAC CAU UAAUU GU UUUCAUUCG@LB@ ||||| ||: :|||| || |||||:||:@LB@ UGAUG GUG GUUAA CA AAAGUGAGU@LB@3'-UUU...GUUUC U UC G AC CCCCU...GCA-5'@LB@ | |@LB@ 75 44@LB@@LB@@LB@Energy -11.53 kcal/mol@LB@Hybridization Energy -20.8412 kcal/mol@LB@Unfolding Energy - mRNA 5.57115 kcal/mol@LB@Unfolding Energy - sRNA 3.74056 kcal/mol@LB@@LB@Position - mRNA 103 -- 132@LB@Position - sRNA 45 -- 74@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 45 -- 51@LB@ |
9 |
4.743e-05 |
0.01855 |
b1204 |
pth |
-17.38 |
0.004387 |
162 -- 190 |
43 -- 74 |
peptidyl-tRNA hydrolase |
|
_____________161_______________________________191\n_____________|_________________________________|\n5'-UGG...AGUAA________________A_____ACA________ACAAA...AGC-3'\n______________ACUACGCGC__CAGUU___UGU___CACUCAGG\n______________|||||:|:|__||:||___|||___||||||||\n______________UGAUGUGUG__GUUAA___ACA___GUGAGUCC\n3'-UUU...GUUUC_________UC_____GCA___AA_________CCUAA...GCA-5'\n_____________|_________________________________|\n_____________75________________________________42\n |
184 -- 190 |
43 -- 49 |
-27.969 kcal/mol |
6.24318 kcal/mol |
4.35222 kcal/mol |
161 191@LB@ | |@LB@5'-UGG...AGUAA A ACA ACAAA...AGC-3'@LB@ ACUACGCGC CAGUU UGU CACUCAGG@LB@ |||||:|:| ||:|| ||| ||||||||@LB@ UGAUGUGUG GUUAA ACA GUGAGUCC@LB@3'-UUU...GUUUC UC GCA AA CCUAA...GCA-5'@LB@ | |@LB@ 75 42@LB@@LB@@LB@Energy -17.38 kcal/mol@LB@Hybridization Energy -27.969 kcal/mol@LB@Unfolding Energy - mRNA 6.24318 kcal/mol@LB@Unfolding Energy - sRNA 4.35222 kcal/mol@LB@@LB@Position - mRNA 162 -- 190@LB@Position - sRNA 43 -- 74@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 43 -- 49@LB@ |
10 |
6.564e-05 |
0.0231 |
b3458 |
livK |
-17.14 |
0.005196 |
153 -- 196 |
35 -- 71 |
leucine transporter subunit |
|
_____________152____________________________________________197\n_____________|______________________________________________|\n5'-UGU...UGUUA______AAAAACAA_____CACAACA______GAAU__________GACUA...CGA-3'\n______________ACACAU________AGCAA_________UCAC____GGGGAUUUUU\n______________|||||:________|||||_________||||____||||||||::\n______________UGUGUG________UCGUU_________AGUG____CCCCUAAAGG\n3'-UUU...UCUGA___________________AAGCAACAA____AGU___________UACGA...GCA-5'\n_____________|______________________________________________|\n_____________72_____________________________________________34\n |
190 -- 196 |
35 -- 41 |
-26.3585 kcal/mol |
4.43917 kcal/mol |
4.78171 kcal/mol |
152 197@LB@ | |@LB@5'-UGU...UGUUA AAAAACAA CACAACA GAAU GACUA...CGA-3'@LB@ ACACAU AGCAA UCAC GGGGAUUUUU@LB@ |||||: ||||| |||| ||||||||::@LB@ UGUGUG UCGUU AGUG CCCCUAAAGG@LB@3'-UUU...UCUGA AAGCAACAA AGU UACGA...GCA-5'@LB@ | |@LB@ 72 34@LB@@LB@@LB@Energy -17.14 kcal/mol@LB@Hybridization Energy -26.3585 kcal/mol@LB@Unfolding Energy - mRNA 4.43917 kcal/mol@LB@Unfolding Energy - sRNA 4.78171 kcal/mol@LB@@LB@Position - mRNA 153 -- 196@LB@Position - sRNA 35 -- 71@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 35 -- 41@LB@ |
11 |
9.086e-05 |
0.0245 |
b3337 |
bfd |
-12.11 |
0.098410 |
247 -- 280 |
34 -- 76 |
bacterioferritin-associated ferredoxin |
|
_____________246_________________________________________281\n_____________|___________________________________________|\n5'-GCG...UCGUC___________________UCCCC___________________GCAAU...UUC-3'\n______________AGGCUGUGCGC__CAGUUU______UCACUCG______UUCCA\n______________||:||:::|:|__||:||:______||||||:______|||||\n______________UCUGAUGUGUG__GUUAAG______AGUGAGU______AAGGU\n3'-UUU...CCGUU___________UC______CAACAA_______CCCCUA_____ACGAA...GCA-5'\n_____________|___________________________________________|\n_____________77__________________________________________33\n |
269 -- 275 |
45 -- 51 |
-24.9474 kcal/mol |
8.02269 kcal/mol |
4.816 kcal/mol |
246 281@LB@ | |@LB@5'-GCG...UCGUC UCCCC GCAAU...UUC-3'@LB@ AGGCUGUGCGC CAGUUU UCACUCG UUCCA@LB@ ||:||:::|:| ||:||: ||||||: |||||@LB@ UCUGAUGUGUG GUUAAG AGUGAGU AAGGU@LB@3'-UUU...CCGUU UC CAACAA CCCCUA ACGAA...GCA-5'@LB@ | |@LB@ 77 33@LB@@LB@@LB@Energy -12.11 kcal/mol@LB@Hybridization Energy -24.9474 kcal/mol@LB@Unfolding Energy - mRNA 8.02269 kcal/mol@LB@Unfolding Energy - sRNA 4.816 kcal/mol@LB@@LB@Position - mRNA 247 -- 280@LB@Position - sRNA 34 -- 76@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 45 -- 51@LB@ |
12 |
9.939e-05 |
0.0245 |
b2308 |
hisQ |
-13.21 |
0.056865 |
186 -- 218 |
34 -- 75 |
histidine ABC transporter permease |
|
_____________185__________________________________________219\n_____________|____________________________________________|\n5'-GAU...CACAC___AGG___G_______________AU_________________GGUGU...UUG-3'\n______________GAC___ACA_GCAGCA___UGUUGU__________GGGUUUUCA\n______________|||___|||_:|||||___:|||||__________||:|||:||\n______________CUG___UGU_UGUCGU___GCAACA__________CCUAAAGGU\n3'-UUU...CGUUU___A_____G______UAA______AAGUGAGUCC_________ACGAA...GCA-5'\n_____________|____________________________________________|\n_____________76___________________________________________33\n |
212 -- 218 |
34 -- 40 |
-26.3199 kcal/mol |
8.29445 kcal/mol |
4.816 kcal/mol |
185 219@LB@ | |@LB@5'-GAU...CACAC AGG G AU GGUGU...UUG-3'@LB@ GAC ACA GCAGCA UGUUGU GGGUUUUCA@LB@ ||| ||| :||||| :||||| ||:|||:||@LB@ CUG UGU UGUCGU GCAACA CCUAAAGGU@LB@3'-UUU...CGUUU A G UAA AAGUGAGUCC ACGAA...GCA-5'@LB@ | |@LB@ 76 33@LB@@LB@@LB@Energy -13.21 kcal/mol@LB@Hybridization Energy -26.3199 kcal/mol@LB@Unfolding Energy - mRNA 8.29445 kcal/mol@LB@Unfolding Energy - sRNA 4.816 kcal/mol@LB@@LB@Position - mRNA 186 -- 218@LB@Position - sRNA 34 -- 75@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 34 -- 40@LB@ |
13 |
0.0001005 |
0.0245 |
b1921 |
fliZ |
-13.92 |
0.038869 |
246 -- 263 |
63 -- 78 |
RpoS antagonist; putative regulator of FliA activity |
|
_____________245________________264\n_____________|__________________|\n5'-UGC...AUCUU_______UUAA_______CAGAC...AUC-3'\n______________AAAGACU____ACACAGC\n______________|||||||____|||||||\n______________UUUCUGA____UGUGUCG\n3'-UUU...ACCCG_______UG_________UUAAG...GCA-5'\n_____________|__________________|\n_____________79_________________62\n |
257 -- 263 |
63 -- 69 |
-17.8578 kcal/mol |
0.69523 kcal/mol |
3.24195 kcal/mol |
245 264@LB@ | |@LB@5'-UGC...AUCUU UUAA CAGAC...AUC-3'@LB@ AAAGACU ACACAGC@LB@ ||||||| |||||||@LB@ UUUCUGA UGUGUCG@LB@3'-UUU...ACCCG UG UUAAG...GCA-5'@LB@ | |@LB@ 79 62@LB@@LB@@LB@Energy -13.92 kcal/mol@LB@Hybridization Energy -17.8578 kcal/mol@LB@Unfolding Energy - mRNA 0.69523 kcal/mol@LB@Unfolding Energy - sRNA 3.24195 kcal/mol@LB@@LB@Position - mRNA 246 -- 263@LB@Position - sRNA 63 -- 78@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 63 -- 69@LB@ |
14 |
0.0001025 |
0.0245 |
b4051 |
qorA |
-14.73 |
0.024599 |
192 -- 224 |
48 -- 76 |
quinone oxidoreductase NADPH-dependent |
|
_____________191_______________________________225\n_____________|_________________________________|\n5'-CGC...GUUCU___GG___________CA__AA___AA______AAGCA...UCG-3'\n______________GGA__ACACAUGGCAA__CG__UUG__UUUCAC\n______________:||__|||||::||||__||__|||__||||||\n______________UCU__UGUGUGUCGUU__GC__AAC__AAAGUG\n3'-UUU...CCGUU___GA___________AA_______________AGUCC...GCA-5'\n_____________|_________________________________|\n_____________77________________________________47\n |
201 -- 207 |
61 -- 67 |
-23.6874 kcal/mol |
5.27405 kcal/mol |
3.68714 kcal/mol |
191 225@LB@ | |@LB@5'-CGC...GUUCU GG CA AA AA AAGCA...UCG-3'@LB@ GGA ACACAUGGCAA CG UUG UUUCAC@LB@ :|| |||||::|||| || ||| ||||||@LB@ UCU UGUGUGUCGUU GC AAC AAAGUG@LB@3'-UUU...CCGUU GA AA AGUCC...GCA-5'@LB@ | |@LB@ 77 47@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -23.6874 kcal/mol@LB@Unfolding Energy - mRNA 5.27405 kcal/mol@LB@Unfolding Energy - sRNA 3.68714 kcal/mol@LB@@LB@Position - mRNA 192 -- 224@LB@Position - sRNA 48 -- 76@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 61 -- 67@LB@ |