24 |
0.000609 |
0.08814 |
stm3510 |
yhgH |
-18.34 |
0.033208 |
106 -- 153 |
42 -- 84 |
DNA utilization protein GntX |
|
_____________105____________________________________154\n_____________|______________________________________|\n5'-CCG...UCCGU____________G__G___AUUUCCCUC__________UGCCA...GCG-3'\n______________GCAGCAGCACAA_AU_ACA_________GCCGUAGGUC\n______________:||:||:|||||_||_|||_________:|||||:|:|\n______________UGUUGUUGUGUU_UA_UGU_________UGGCAUUCGG\n3'-UUU...GUUUG____________G__G______________________UUUUC...UCA-5'\n_____________|______________________________________|\n_____________85_____________________________________41\n |
135 -- 141 |
58 -- 64 |
-35.7194 kcal/mol |
10.0869 kcal/mol |
11.5136 kcal/mol |
105 154@LB@ | |@LB@5'-CCG...UCCGU G G AUUUCCCUC UGCCA...GCG-3'@LB@ GCAGCAGCACAA AU ACA GCCGUAGGUC@LB@ :||:||:||||| || ||| :|||||:|:|@LB@ UGUUGUUGUGUU UA UGU UGGCAUUCGG@LB@3'-UUU...GUUUG G G UUUUC...UCA-5'@LB@ | |@LB@ 85 41@LB@@LB@@LB@Energy -18.34 kcal/mol@LB@Hybridization Energy -35.7194 kcal/mol@LB@Unfolding Energy - mRNA 10.0869 kcal/mol@LB@Unfolding Energy - sRNA 11.5136 kcal/mol@LB@@LB@Position - mRNA 106 -- 153@LB@Position - sRNA 42 -- 84@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 58 -- 64@LB@ |
195 |
0.01085 |
0.197 |
stm0549 |
fimZ |
-13.17 |
0.226725 |
219 -- 235 |
155 -- 171 |
DNA-binding response regulator |
|
_____________218___________236\n_____________|_____________|\n5'-CAG...CUGUU_____________AACAC...UGA-3'\n______________AUCAUUAUGGACG\n______________||||:|||||||:\n______________UAGUGAUACCUGU\n3'-UUU...GUAAU_____________CUGUC...UCA-5'\n_____________|_____________|\n_____________172___________154\n |
225 -- 231 |
159 -- 165 |
-17.3187 kcal/mol |
3.33371 kcal/mol |
3.42647 kcal/mol |
218 236@LB@ | |@LB@5'-CAG...CUGUU AACAC...UGA-3'@LB@ AUCAUUAUGGACG@LB@ ||||:|||||||:@LB@ UAGUGAUACCUGU@LB@3'-UUU...GUAAU CUGUC...UCA-5'@LB@ | |@LB@ 172 154@LB@@LB@@LB@Energy -13.17 kcal/mol@LB@Hybridization Energy -17.3187 kcal/mol@LB@Unfolding Energy - mRNA 3.33371 kcal/mol@LB@Unfolding Energy - sRNA 3.42647 kcal/mol@LB@@LB@Position - mRNA 219 -- 235@LB@Position - sRNA 155 -- 171@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 159 -- 165@LB@ |
198 |
0.01098 |
0.197 |
stm2803 |
N/A |
-14.51 |
0.140962 |
192 -- 262 |
36 -- 101 |
DNA-binding transcriptional regulator |
|
_____________191___________________________263\n_____________|_____________________________|\n5'-GCU...AAAAA________UA___C_____UAU_______UCGCU...CGC-3'\n______________GCAGACCA__UGC__GCGC___CAGCACA\n______________||||||||__|||__:|:|___||:||||\n______________CGUCUGGU__ACG__UGUG___GUUGUGU\n3'-UUU...CUUAG________UA___UU____UU________UGUAG...UCA-5'\n_____________|_____________________________|\n_____________102___________________________35\n |
213 -- 219 |
74 -- 80 |
-31.0005 kcal/mol |
8.41541 kcal/mol |
13.1066 kcal/mol |
191 263@LB@ | |@LB@5'-GCU...AAAAA UA C UAU UCGCU...CGC-3'@LB@ GCAGACCA UGC GCGC CAGCACA@LB@ |||||||| ||| :|:| ||:||||@LB@ CGUCUGGU ACG UGUG GUUGUGU@LB@3'-UUU...CUUAG UA UU UU UGUAG...UCA-5'@LB@ | |@LB@ 102 35@LB@@LB@@LB@Energy -14.51 kcal/mol@LB@Hybridization Energy -31.0005 kcal/mol@LB@Unfolding Energy - mRNA 8.41541 kcal/mol@LB@Unfolding Energy - sRNA 13.1066 kcal/mol@LB@@LB@Position - mRNA 192 -- 262@LB@Position - sRNA 36 -- 101@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 74 -- 80@LB@ |
170 |
0.009347 |
0.1945 |
stm0477 |
acrR |
-17.70 |
0.042454 |
229 -- 246 |
74 -- 91 |
DNA-binding transcriptional repressor AcrR |
|
_____________228________________247\n_____________|__________________|\n5'-AAG...AGCGC__G_______________UCCUG...CGC-3'\n______________UG_AGACACGACAACACA\n______________||_|:||||:||||||||\n______________AC_UUUGUGUUGUUGUGU\n3'-UUU...GGUUA__G_______________UGUAG...UCA-5'\n_____________|__________________|\n_____________92_________________73\n |
240 -- 246 |
74 -- 80 |
-24.9092 kcal/mol |
3.16809 kcal/mol |
3.73631 kcal/mol |
228 247@LB@ | |@LB@5'-AAG...AGCGC G UCCUG...CGC-3'@LB@ UG AGACACGACAACACA@LB@ || |:||||:||||||||@LB@ AC UUUGUGUUGUUGUGU@LB@3'-UUU...GGUUA G UGUAG...UCA-5'@LB@ | |@LB@ 92 73@LB@@LB@@LB@Energy -17.70 kcal/mol@LB@Hybridization Energy -24.9092 kcal/mol@LB@Unfolding Energy - mRNA 3.16809 kcal/mol@LB@Unfolding Energy - sRNA 3.73631 kcal/mol@LB@@LB@Position - mRNA 229 -- 246@LB@Position - sRNA 74 -- 91@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 74 -- 80@LB@ |
192 |
0.01067 |
0.197 |
stm2650 |
yfiP |
-13.22 |
0.223534 |
188 -- 232 |
36 -- 90 |
DTW domain-containing protein |
|
_____________187_________________________233\n_____________|___________________________|\n5'-UCA...UCUCC________UUUCUAUGACC________UGUCC...GCU-3'\n______________GCAAACGC___________AAUAACGC\n______________||||||:|___________||:|||:|\n______________CGUUUGUG___________UUGUUGUG\n3'-UUU...GUUAA___________________________UUGUA...UCA-5'\n_____________|___________________________|\n_____________91__________________________35\n |
208 -- 214 |
75 -- 81 |
-16.7007 kcal/mol |
3.95203 kcal/mol |
3.72363 kcal/mol |
187 233@LB@ | |@LB@5'-UCA...UCUCC UUUCUAUGACC UGUCC...GCU-3'@LB@ GCAAACGC AAUAACGC@LB@ ||||||:| ||:|||:|@LB@ CGUUUGUG UUGUUGUG@LB@3'-UUU...GUUAA UUGUA...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -13.22 kcal/mol@LB@Hybridization Energy -16.7007 kcal/mol@LB@Unfolding Energy - mRNA 3.95203 kcal/mol@LB@Unfolding Energy - sRNA 3.72363 kcal/mol@LB@@LB@Position - mRNA 188 -- 232@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 75 -- 81@LB@ |
29 |
0.0007392 |
0.08814 |
stm3096 |
yqgE |
-16.45 |
0.068552 |
198 -- 251 |
37 -- 84 |
DUF179 domain-containing protein |
|
_____________197___________252\n_____________|_____________|\n5'-UGG...UAUAU_____________CAGGA...GCG-3'\n______________UUGCGAGCACAAC\n______________||||:|:||||||\n______________AACGUUUGUGUUG\n3'-UUU...UGGUU_____________UUGUG...UCA-5'\n_____________|_____________|\n_____________85____________36\n |
284 -- 290 |
80 -- 86 |
-18.5161 kcal/mol |
2.82597 kcal/mol |
3.5889 kcal/mol |
197 252@LB@ | |@LB@5'-UGG...UAUAU CAGGA...GCG-3'@LB@ UUGCGAGCACAAC@LB@ ||||:|:||||||@LB@ AACGUUUGUGUUG@LB@3'-UUU...UGGUU UUGUG...UCA-5'@LB@ | |@LB@ 85 36@LB@@LB@@LB@Energy -16.45 kcal/mol@LB@Hybridization Energy -18.5161 kcal/mol@LB@Unfolding Energy - mRNA 2.82597 kcal/mol@LB@Unfolding Energy - sRNA 3.5889 kcal/mol@LB@@LB@Position - mRNA 198 -- 251@LB@Position - sRNA 37 -- 84@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 80 -- 86@LB@ |
48 |
0.001762 |
0.1291 |
stm4523 |
yjiW |
-20.55 |
0.014078 |
157 -- 299 |
40 -- 186 |
endoribonuclease SymE |
|
_____________156____________________________________________________________________________________________300\n_____________|______________________________________________________________________________________________|\n5'-GUG...AUUUU____AA___CCA__A__A_______CCAUUCU__________CG______UC__GAAGUCUCCC___________C______CUU_________UAUGC...AUU-3'\n______________AGGG__UAG___UC_UG_CUACCGU_______AUUGCAGAUC___UGCGA__CA__________CAACAA_AUAA_CGUCAC___ACCGUGAGU\n______________||||__|||___||_:|_|||||||_______||:|||||:|___|||:|__||__________||||||_|:||_|:||||___|||||:||:\n______________UCCC__AUC___AG_GC_GAUGGCA_______UAGCGUCUGG___ACGUU__GU__________GUUGUU_UGUU_GUAGUG___UGGCAUUCG\n3'-UUU...CUUUU______________A__________CCAGACU__________UUA_____U___________________G___________U___________GUUUU...UCA-5'\n_____________|______________________________________________________________________________________________|\n_____________187____________________________________________________________________________________________39\n |
222 -- 228 |
95 -- 101 |
-59.8396 kcal/mol |
18.2388 kcal/mol |
27.0823 kcal/mol |
156 300@LB@ | |@LB@5'-GUG...AUUUU AA CCA A A CCAUUCU CG UC GAAGUCUCCC C CUU UAUGC...AUU-3'@LB@ AGGG UAG UC UG CUACCGU AUUGCAGAUC UGCGA CA CAACAA AUAA CGUCAC ACCGUGAGU@LB@ |||| ||| || :| ||||||| ||:|||||:| |||:| || |||||| |:|| |:|||| |||||:||:@LB@ UCCC AUC AG GC GAUGGCA UAGCGUCUGG ACGUU GU GUUGUU UGUU GUAGUG UGGCAUUCG@LB@3'-UUU...CUUUU A CCAGACU UUA U G U GUUUU...UCA-5'@LB@ | |@LB@ 187 39@LB@@LB@@LB@Energy -20.55 kcal/mol@LB@Hybridization Energy -59.8396 kcal/mol@LB@Unfolding Energy - mRNA 18.2388 kcal/mol@LB@Unfolding Energy - sRNA 27.0823 kcal/mol@LB@@LB@Position - mRNA 157 -- 299@LB@Position - sRNA 40 -- 186@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 95 -- 101@LB@ |
185 |
0.01043 |
0.1967 |
stm1700 |
fabI |
-13.03 |
0.238331 |
75 -- 107 |
38 -- 76 |
enoyl-[acyl-carrier-protein] reductase |
|
_____________74______________________________108\n_____________|_______________________________|\n5'-AGU...AGCGU____C______C___________________UAUAA...CUG-3'\n______________GACA_ACGGGG________CA_GGAGUGGGA\n______________||||_||:|||________||_|:||||::|\n______________CUGU_UGUCCC________GU_CUUCACUUU\n3'-UUU...GAUAC____C______AUUUACAU__C_________UUCCC...UCA-5'\n_____________|_______________________________|\n_____________77______________________________37\n |
96 -- 102 |
134 -- 140 |
-20.8604 kcal/mol |
6.05685 kcal/mol |
6.0649 kcal/mol |
74 108@LB@ | |@LB@5'-AGU...AGCGU C C UAUAA...CUG-3'@LB@ GACA ACGGGG CA GGAGUGGGA@LB@ |||| ||:||| || |:||||::|@LB@ CUGU UGUCCC GU CUUCACUUU@LB@3'-UUU...GAUAC C AUUUACAU C UUCCC...UCA-5'@LB@ | |@LB@ 77 37@LB@@LB@@LB@Energy -13.03 kcal/mol@LB@Hybridization Energy -20.8604 kcal/mol@LB@Unfolding Energy - mRNA 6.05685 kcal/mol@LB@Unfolding Energy - sRNA 6.0649 kcal/mol@LB@@LB@Position - mRNA 75 -- 107@LB@Position - sRNA 38 -- 76@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 134 -- 140@LB@ |
87 |
0.004009 |
0.1596 |
stm2067 |
sbcB |
-11.70 |
0.367652 |
220 -- 292 |
35 -- 90 |
exodeoxyribonuclease I |
|
_____________219_____________________293\n_____________|_______________________|\n5'-AUU...AUGUA______U________________AUUGG...CCG-3'\n______________CGAACA_UAGCA__ACAAUAUCA\n______________|:||||_:|:||__||||:||||\n______________GUUUGU_GUUGU__UGUUGUAGU\n3'-UUU...UUAAC____________UG_________GUUGG...UCA-5'\n_____________|_______________________|\n_____________91______________________34\n |
110 -- 116 |
68 -- 74 |
-17.8808 kcal/mol |
2.08887 kcal/mol |
5.27986 kcal/mol |
219 293@LB@ | |@LB@5'-AUU...AUGUA U AUUGG...CCG-3'@LB@ CGAACA UAGCA ACAAUAUCA@LB@ |:|||| :|:|| ||||:||||@LB@ GUUUGU GUUGU UGUUGUAGU@LB@3'-UUU...UUAAC UG GUUGG...UCA-5'@LB@ | |@LB@ 91 34@LB@@LB@@LB@Energy -11.70 kcal/mol@LB@Hybridization Energy -17.8808 kcal/mol@LB@Unfolding Energy - mRNA 2.08887 kcal/mol@LB@Unfolding Energy - sRNA 5.27986 kcal/mol@LB@@LB@Position - mRNA 220 -- 292@LB@Position - sRNA 35 -- 90@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 68 -- 74@LB@ |
153 |
0.008123 |
0.1845 |
stm2512 |
xseA |
-14.57 |
0.138273 |
215 -- 252 |
42 -- 82 |
exodeoxyribonuclease VII large subunit |
|
_____________214________253\n_____________|__________|\n5'-CGU...UUUUU__________GCCUU...GCG-3'\n______________ACCGUAAGCC\n______________||||||||||\n______________UGGCAUUCGG\n3'-UUU...AGUGU__________UUUUC...UCA-5'\n_____________|__________|\n_____________83_________41\n |
234 -- 240 |
56 -- 62 |
-17.1871 kcal/mol |
1.1981 kcal/mol |
7.48121 kcal/mol |
214 253@LB@ | |@LB@5'-CGU...UUUUU GCCUU...GCG-3'@LB@ ACCGUAAGCC@LB@ ||||||||||@LB@ UGGCAUUCGG@LB@3'-UUU...AGUGU UUUUC...UCA-5'@LB@ | |@LB@ 83 41@LB@@LB@@LB@Energy -14.57 kcal/mol@LB@Hybridization Energy -17.1871 kcal/mol@LB@Unfolding Energy - mRNA 1.1981 kcal/mol@LB@Unfolding Energy - sRNA 7.48121 kcal/mol@LB@@LB@Position - mRNA 215 -- 252@LB@Position - sRNA 42 -- 82@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 56 -- 62@LB@ |