| 3 |
3.698e-05 |
0.04123 |
stm4398 |
cycA |
-21.36 |
0.010235 |
127 -- 178 |
38 -- 82 |
D-serine/D-alanine/glycine transporter |
|
_____________126_________________________________________________179\n_____________|___________________________________________________|\n5'-CGU...GCCCG___AAC__________________________________CAU_____A__AGGUA...UUG-3'\n______________CAC_____ACAGACAGG_______UACAGGAA__GAAAAA___GGUAG_UC\n______________|||_____|||||||||_______||||||||__||||||___|||||_||\n______________GUG_____UGUCUGUCC_______AUGUCCUU__CUUUUU___CCAUC_AG\n3'-UUU...AAUUA___AUACC_________CAUUUAC________CA______C__________AGCGA...UCA-5'\n_____________|___________________________________________________|\n_____________83__________________________________________________37\n |
187 -- 193 |
138 -- 144 |
-35.3631 kcal/mol |
4.42279 kcal/mol |
10.6404 kcal/mol |
126 179@LB@ | |@LB@5'-CGU...GCCCG AAC CAU A AGGUA...UUG-3'@LB@ CAC ACAGACAGG UACAGGAA GAAAAA GGUAG UC@LB@ ||| ||||||||| |||||||| |||||| ||||| ||@LB@ GUG UGUCUGUCC AUGUCCUU CUUUUU CCAUC AG@LB@3'-UUU...AAUUA AUACC CAUUUAC CA C AGCGA...UCA-5'@LB@ | |@LB@ 83 37@LB@@LB@@LB@Energy -21.36 kcal/mol@LB@Hybridization Energy -35.3631 kcal/mol@LB@Unfolding Energy - mRNA 4.42279 kcal/mol@LB@Unfolding Energy - sRNA 10.6404 kcal/mol@LB@@LB@Position - mRNA 127 -- 178@LB@Position - sRNA 38 -- 82@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 138 -- 144@LB@ |
| 36 |
0.00125 |
0.1215 |
stm3523 |
glpR |
-16.55 |
0.065942 |
207 -- 266 |
37 -- 89 |
DeoR/GlpR family transcriptional regulator |
|
_____________206________________267\n_____________|__________________|\n5'-UUG...UGAAA__________________GCGAU...CGC-3'\n______________CAAACACAACGGCAUGAC\n______________||||||||||::||::||\n______________GUUUGUGUUGUUGUGUUG\n3'-UUU...UUAAC__________________UAGUG...UCA-5'\n_____________|__________________|\n_____________90_________________36\n |
218 -- 224 |
72 -- 78 |
-24.6143 kcal/mol |
5.8046 kcal/mol |
3.79561 kcal/mol |
206 267@LB@ | |@LB@5'-UUG...UGAAA GCGAU...CGC-3'@LB@ CAAACACAACGGCAUGAC@LB@ ||||||||||::||::||@LB@ GUUUGUGUUGUUGUGUUG@LB@3'-UUU...UUAAC UAGUG...UCA-5'@LB@ | |@LB@ 90 36@LB@@LB@@LB@Energy -16.55 kcal/mol@LB@Hybridization Energy -24.6143 kcal/mol@LB@Unfolding Energy - mRNA 5.8046 kcal/mol@LB@Unfolding Energy - sRNA 3.79561 kcal/mol@LB@@LB@Position - mRNA 207 -- 266@LB@Position - sRNA 37 -- 89@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 163 |
0.008532 |
0.1864 |
stm3093 |
endA |
-16.58 |
0.065141 |
135 -- 160 |
72 -- 101 |
deoxyribonuclease I |
|
_____________134___________________________________161\n_____________|_____________________________________|\n5'-CCA...CUUUC_____________________U_______________UUUCG...CGG-3'\n______________CUGA___GCGGACUGAUUGCA_ACA____GACACAAC\n______________||||___||:|||::||||||_|||____:|||||||\n______________GACU___CGUCUGGUUAACGU_UGU____UUGUGUUG\n3'-UUU...CACCA____UAG______________U___GUUG________UAGUG...UCA-5'\n_____________|_____________________________________|\n_____________102___________________________________71\n |
154 -- 160 |
72 -- 78 |
-36.4155 kcal/mol |
5.60666 kcal/mol |
13.5432 kcal/mol |
134 161@LB@ | |@LB@5'-CCA...CUUUC U UUUCG...CGG-3'@LB@ CUGA GCGGACUGAUUGCA ACA GACACAAC@LB@ |||| ||:|||::|||||| ||| :|||||||@LB@ GACU CGUCUGGUUAACGU UGU UUGUGUUG@LB@3'-UUU...CACCA UAG U GUUG UAGUG...UCA-5'@LB@ | |@LB@ 102 71@LB@@LB@@LB@Energy -16.58 kcal/mol@LB@Hybridization Energy -36.4155 kcal/mol@LB@Unfolding Energy - mRNA 5.60666 kcal/mol@LB@Unfolding Energy - sRNA 13.5432 kcal/mol@LB@@LB@Position - mRNA 135 -- 160@LB@Position - sRNA 72 -- 101@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 196 |
0.01089 |
0.197 |
stm3904 |
ilvD |
-14.14 |
0.161583 |
237 -- 253 |
179 -- 194 |
dihydroxy-acid dehydratase |
|
_____________236___________254\n_____________|_____________|\n5'-CGA...UGAAG___AA________AGUAA...GCA-3'\n______________GGA__AGAUGGGG\n______________|||__|||::|||\n______________CCU__UCUGUCCC\n3'-UUU...UGAUA___G_________AUUUA...UCA-5'\n_____________|_____________|\n_____________195___________178\n |
182 -- 188 |
152 -- 158 |
-15.6614 kcal/mol |
1.17371 kcal/mol |
3.10307 kcal/mol |
236 254@LB@ | |@LB@5'-CGA...UGAAG AA AGUAA...GCA-3'@LB@ GGA AGAUGGGG@LB@ ||| |||::|||@LB@ CCU UCUGUCCC@LB@3'-UUU...UGAUA G AUUUA...UCA-5'@LB@ | |@LB@ 195 178@LB@@LB@@LB@Energy -14.14 kcal/mol@LB@Hybridization Energy -15.6614 kcal/mol@LB@Unfolding Energy - mRNA 1.17371 kcal/mol@LB@Unfolding Energy - sRNA 3.10307 kcal/mol@LB@@LB@Position - mRNA 237 -- 253@LB@Position - sRNA 179 -- 194@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 152 -- 158@LB@ |
| 66 |
0.003179 |
0.1596 |
stm0264 |
dnaQ |
-14.69 |
0.132400 |
209 -- 271 |
35 -- 91 |
DNA polymerase III epsilon subunit |
|
_____________208__________________________________________272\n_____________|____________________________________________|\n5'-CGG...CGCAA______C__AAAU_______AU_______U___AUU________GAUUG...UCG-3'\n______________GUCUGA_AU____GACCGAU___GAGCAC_GCA___ACACGACA\n______________||||||_||____||||:||___:|:|||_:||___||||:|||\n______________CAGACU_UA____CUGGUUA___UUUGUG_UGU___UGUGUUGU\n3'-UUU...GGCAC_________GCGU_______ACG______U______________AGUGU...UCA-5'\n_____________|____________________________________________|\n_____________92___________________________________________34\n |
217 -- 223 |
71 -- 77 |
-33.8618 kcal/mol |
8.04508 kcal/mol |
13.5573 kcal/mol |
208 272@LB@ | |@LB@5'-CGG...CGCAA C AAAU AU U AUU GAUUG...UCG-3'@LB@ GUCUGA AU GACCGAU GAGCAC GCA ACACGACA@LB@ |||||| || ||||:|| :|:||| :|| ||||:|||@LB@ CAGACU UA CUGGUUA UUUGUG UGU UGUGUUGU@LB@3'-UUU...GGCAC GCGU ACG U AGUGU...UCA-5'@LB@ | |@LB@ 92 34@LB@@LB@@LB@Energy -14.69 kcal/mol@LB@Hybridization Energy -33.8618 kcal/mol@LB@Unfolding Energy - mRNA 8.04508 kcal/mol@LB@Unfolding Energy - sRNA 13.5573 kcal/mol@LB@@LB@Position - mRNA 209 -- 271@LB@Position - sRNA 35 -- 91@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 114 |
0.005594 |
0.1728 |
stm4557 |
holD |
-13.75 |
0.185681 |
35 -- 94 |
141 -- 186 |
DNA polymerase III subunit psi |
|
_____________34_____________________________________________95\n_____________|______________________________________________|\n5'-AGG...AAAUC__________C____CAAGACUUCACUUGC_________A______ACAUG...UUC-3'\n______________AUCACUGUGG_GCAG_______________CGGGGUAAA___GCAG\n______________||||||:|||_:|||_______________|:|||||||___:|||\n______________UAGUGAUACC_UGUC_______________GUCCCAUUU___UGUC\n3'-UUU...GUAAU_______________U_______________________ACA____CUUCA...UCA-5'\n_____________|______________________________________________|\n_____________187____________________________________________140\n |
83 -- 89 |
148 -- 154 |
-31.7183 kcal/mol |
12.8981 kcal/mol |
5.60568 kcal/mol |
34 95@LB@ | |@LB@5'-AGG...AAAUC C CAAGACUUCACUUGC A ACAUG...UUC-3'@LB@ AUCACUGUGG GCAG CGGGGUAAA GCAG@LB@ ||||||:||| :||| |:||||||| :|||@LB@ UAGUGAUACC UGUC GUCCCAUUU UGUC@LB@3'-UUU...GUAAU U ACA CUUCA...UCA-5'@LB@ | |@LB@ 187 140@LB@@LB@@LB@Energy -13.75 kcal/mol@LB@Hybridization Energy -31.7183 kcal/mol@LB@Unfolding Energy - mRNA 12.8981 kcal/mol@LB@Unfolding Energy - sRNA 5.60568 kcal/mol@LB@@LB@Position - mRNA 35 -- 94@LB@Position - sRNA 141 -- 186@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 148 -- 154@LB@ |
| 53 |
0.002045 |
0.1363 |
stm1876 |
holE |
-16.46 |
0.068295 |
21 -- 75 |
31 -- 90 |
DNA polymerase III subunit theta |
|
_____________20__________________________________________76\n_____________|___________________________________________|\n5'-CGU...UGCCA_______GUAA___UA___________G___C__A________AUAUU...UGC-3'\n______________GC_AGCA____AGC__AACGUCGCGAU_GUG_AG__AGAAGCC\n______________||_|:||____|:|__|||:||:|:|:_||:_||__|:|||||\n______________CG_UUGU____UUG__UUGUAGUGUUG_CAU_UC__UUUUCGG\n3'-UUU...GUUAA__U____GUUG___UG___________G______GG_______GUAGU...UCA-5'\n_____________|___________________________________________|\n_____________91__________________________________________30\n |
55 -- 61 |
49 -- 55 |
-35.8289 kcal/mol |
10.2843 kcal/mol |
15.2217 kcal/mol |
20 76@LB@ | |@LB@5'-CGU...UGCCA GUAA UA G C A AUAUU...UGC-3'@LB@ GC AGCA AGC AACGUCGCGAU GUG AG AGAAGCC@LB@ || |:|| |:| |||:||:|:|: ||: || |:|||||@LB@ CG UUGU UUG UUGUAGUGUUG CAU UC UUUUCGG@LB@3'-UUU...GUUAA U GUUG UG G GG GUAGU...UCA-5'@LB@ | |@LB@ 91 30@LB@@LB@@LB@Energy -16.46 kcal/mol@LB@Hybridization Energy -35.8289 kcal/mol@LB@Unfolding Energy - mRNA 10.2843 kcal/mol@LB@Unfolding Energy - sRNA 15.2217 kcal/mol@LB@@LB@Position - mRNA 21 -- 75@LB@Position - sRNA 31 -- 90@LB@Position Seed - mRNA 55 -- 61@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 119 |
0.005831 |
0.1745 |
stm1998 |
umuD |
-19.31 |
0.022806 |
33 -- 72 |
46 -- 81 |
DNA polymerase V subunit UmuD |
|
_____________32___________________73\n_____________|____________________|\n5'-AGA...AAAUA____C_______________CGGAA...ACA-3'\n______________UGCG_ACAUGACAAUACAAC\n______________|||:_|||::||||:|||||\n______________ACGU_UGUGUUGUUGUGUUG\n3'-UUU...GGUUA____U_______________UAGUG...UCA-5'\n_____________|____________________|\n_____________82___________________45\n |
45 -- 51 |
72 -- 78 |
-23.5929 kcal/mol |
1.21213 kcal/mol |
3.80548 kcal/mol |
32 73@LB@ | |@LB@5'-AGA...AAAUA C CGGAA...ACA-3'@LB@ UGCG ACAUGACAAUACAAC@LB@ |||: |||::||||:|||||@LB@ ACGU UGUGUUGUUGUGUUG@LB@3'-UUU...GGUUA U UAGUG...UCA-5'@LB@ | |@LB@ 82 45@LB@@LB@@LB@Energy -19.31 kcal/mol@LB@Hybridization Energy -23.5929 kcal/mol@LB@Unfolding Energy - mRNA 1.21213 kcal/mol@LB@Unfolding Energy - sRNA 3.80548 kcal/mol@LB@@LB@Position - mRNA 33 -- 72@LB@Position - sRNA 46 -- 81@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 56 |
0.002144 |
0.1363 |
pslt006 |
repA |
-15.36 |
0.103288 |
219 -- 279 |
36 -- 87 |
DNA replication |
|
_____________218_____________________280\n_____________|_______________________|\n5'-ACU...ACACC_______UGUU____U_______CGACA...CCC-3'\n______________CGAACAC_____CAC__CAUUAC\n______________|:|||||_____|||__|||:||\n______________GUUUGUG_____GUG__GUAGUG\n3'-UUU...UUAAC_______UUGUU___UU______UUGGC...UCA-5'\n_____________|_______________________|\n_____________88______________________35\n |
225 -- 231 |
83 -- 89 |
-15.7114 kcal/mol |
3.78124 kcal/mol |
5.66809 kcal/mol |
218 280@LB@ | |@LB@5'-ACU...ACACC UGUU U CGACA...CCC-3'@LB@ CGAACAC CAC CAUUAC@LB@ |:||||| ||| |||:||@LB@ GUUUGUG GUG GUAGUG@LB@3'-UUU...UUAAC UUGUU UU UUGGC...UCA-5'@LB@ | |@LB@ 88 35@LB@@LB@@LB@Energy -15.36 kcal/mol@LB@Hybridization Energy -15.7114 kcal/mol@LB@Unfolding Energy - mRNA 3.78124 kcal/mol@LB@Unfolding Energy - sRNA 5.66809 kcal/mol@LB@@LB@Position - mRNA 219 -- 279@LB@Position - sRNA 36 -- 87@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 83 -- 89@LB@ |
| 133 |
0.006689 |
0.1774 |
stm0831 |
dps |
-13.05 |
0.236755 |
141 -- 176 |
159 -- 184 |
DNA starvation/stationary phase protection protein Dps |
|
_____________140________________________177\n_____________|__________________________|\n5'-CAU...UUACC___CA_______AACU__________AAUUG...UUA-3'\n______________CAC__AACAGCA____CGUC_UAACC\n______________|||__||||:||____|:||_:||||\n______________GUG__UUGUUGU____GUAG_GUUGG\n3'-UUU...CGUUU____________GUU_____U_____CAUUC...UCA-5'\n_____________|__________________________|\n_____________185________________________158\n |
37 -- 43 |
76 -- 82 |
-18.4678 kcal/mol |
1.39739 kcal/mol |
8.25195 kcal/mol |
140 177@LB@ | |@LB@5'-CAU...UUACC CA AACU AAUUG...UUA-3'@LB@ CAC AACAGCA CGUC UAACC@LB@ ||| ||||:|| |:|| :||||@LB@ GUG UUGUUGU GUAG GUUGG@LB@3'-UUU...CGUUU GUU U CAUUC...UCA-5'@LB@ | |@LB@ 185 158@LB@@LB@@LB@Energy -13.05 kcal/mol@LB@Hybridization Energy -18.4678 kcal/mol@LB@Unfolding Energy - mRNA 1.39739 kcal/mol@LB@Unfolding Energy - sRNA 8.25195 kcal/mol@LB@@LB@Position - mRNA 141 -- 176@LB@Position - sRNA 159 -- 184@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 76 -- 82@LB@ |
