| 41 |
0.0008963 |
0.07693 |
b1378 |
pfo |
-13.27 |
0.055135 |
136 -- 164 |
58 -- 78 |
pyruvate-flavodoxin oxidoreductase |
|
_____________135___________________________165\n_____________|_____________________________|\n5'-GCU...AAUUG_________UACUGGGC____________CGUGC...CAG-3'\n______________AAAGAUUAC________GCGCAGCAAUUU\n______________|||||:|||________:|:||||||||:\n______________UUUCUGAUG________UGUGUCGUUAAG\n3'-UUU...ACCCG_____________________________CAACA...GCA-5'\n_____________|_____________________________|\n_____________79____________________________57\n |
158 -- 164 |
58 -- 64 |
-22.0871 kcal/mol |
5.50788 kcal/mol |
3.31018 kcal/mol |
135 165@LB@ | |@LB@5'-GCU...AAUUG UACUGGGC CGUGC...CAG-3'@LB@ AAAGAUUAC GCGCAGCAAUUU@LB@ |||||:||| :|:||||||||:@LB@ UUUCUGAUG UGUGUCGUUAAG@LB@3'-UUU...ACCCG CAACA...GCA-5'@LB@ | |@LB@ 79 57@LB@@LB@@LB@Energy -13.27 kcal/mol@LB@Hybridization Energy -22.0871 kcal/mol@LB@Unfolding Energy - mRNA 5.50788 kcal/mol@LB@Unfolding Energy - sRNA 3.31018 kcal/mol@LB@@LB@Position - mRNA 136 -- 164@LB@Position - sRNA 58 -- 78@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 42 |
0.0009586 |
0.08031 |
b3747 |
kup |
-11.44 |
0.134185 |
159 -- 185 |
49 -- 77 |
potassium transporter |
|
_____________158___________________________186\n_____________|_____________________________|\n5'-AAA...GCCAA_______A________U___AUA______ACGAA...GUG-3'\n______________GGGACUA_GCACA_CA_UUC____UUUCA\n______________::|||||_:||||_||_|||____|||||\n______________UUCUGAU_UGUGU_GU_AAG____AAAGU\n3'-UUU...CCCGU_______G_____C__U___CAAC_____GAGUC...GCA-5'\n_____________|_____________________________|\n_____________78____________________________48\n |
159 -- 165 |
71 -- 77 |
-19.3471 kcal/mol |
4.22429 kcal/mol |
3.68465 kcal/mol |
158 186@LB@ | |@LB@5'-AAA...GCCAA A U AUA ACGAA...GUG-3'@LB@ GGGACUA GCACA CA UUC UUUCA@LB@ ::||||| :|||| || ||| |||||@LB@ UUCUGAU UGUGU GU AAG AAAGU@LB@3'-UUU...CCCGU G C U CAAC GAGUC...GCA-5'@LB@ | |@LB@ 78 48@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -19.3471 kcal/mol@LB@Unfolding Energy - mRNA 4.22429 kcal/mol@LB@Unfolding Energy - sRNA 3.68465 kcal/mol@LB@@LB@Position - mRNA 159 -- 185@LB@Position - sRNA 49 -- 77@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 43 |
0.00107 |
0.08759 |
b4036 |
lamB |
-10.48 |
0.202041 |
185 -- 197 |
39 -- 51 |
maltose outer membrane porin (maltoporin) |
|
_____________184___________198\n_____________|_____________|\n5'-CGC...AGCAA_G_______A___AGAAU...GUU-3'\n______________U_ACUCAGG_GAU\n______________|_|||||||_|||\n______________A_UGAGUCC_CUA\n3'-UUU...AACAA_G_______C___AAGGU...GCA-5'\n_____________|_____________|\n_____________52____________38\n |
187 -- 193 |
43 -- 49 |
-14.6452 kcal/mol |
2.36402 kcal/mol |
1.79807 kcal/mol |
184 198@LB@ | |@LB@5'-CGC...AGCAA G A AGAAU...GUU-3'@LB@ U ACUCAGG GAU@LB@ | ||||||| |||@LB@ A UGAGUCC CUA@LB@3'-UUU...AACAA G C AAGGU...GCA-5'@LB@ | |@LB@ 52 38@LB@@LB@@LB@Energy -10.48 kcal/mol@LB@Hybridization Energy -14.6452 kcal/mol@LB@Unfolding Energy - mRNA 2.36402 kcal/mol@LB@Unfolding Energy - sRNA 1.79807 kcal/mol@LB@@LB@Position - mRNA 185 -- 197@LB@Position - sRNA 39 -- 51@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 44 |
0.001243 |
0.09943 |
b3064 |
tsaD |
-15.06 |
0.020167 |
98 -- 131 |
41 -- 82 |
tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein |
|
_____________97___________________________________________132\n_____________|____________________________________________|\n5'-CAU...UAUAA_________G_______GA________________U________CGAAC...UGA-3'\n______________GGGUGAGGA_UAUACAC__GGC_________UUUC_C_CAGGGG\n______________|||::|:||_||:||||__:||_________||||_|_||||||\n______________CCCGUUUCU_AUGUGUG__UCG_________AAAG_G_GUCCCC\n3'-UUU...CUCUA_________G____________UUAAGCAAC____U_A______UAAAG...GCA-5'\n_____________|____________________________________________|\n_____________83___________________________________________40\n |
108 -- 114 |
66 -- 72 |
-38.4936 kcal/mol |
9.4641 kcal/mol |
13.9685 kcal/mol |
97 132@LB@ | |@LB@5'-CAU...UAUAA G GA U CGAAC...UGA-3'@LB@ GGGUGAGGA UAUACAC GGC UUUC C CAGGGG@LB@ |||::|:|| ||:|||| :|| |||| | ||||||@LB@ CCCGUUUCU AUGUGUG UCG AAAG G GUCCCC@LB@3'-UUU...CUCUA G UUAAGCAAC U A UAAAG...GCA-5'@LB@ | |@LB@ 83 40@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -38.4936 kcal/mol@LB@Unfolding Energy - mRNA 9.4641 kcal/mol@LB@Unfolding Energy - sRNA 13.9685 kcal/mol@LB@@LB@Position - mRNA 98 -- 131@LB@Position - sRNA 41 -- 82@LB@Position Seed - mRNA 108 -- 114@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 45 |
0.001296 |
0.1014 |
b2465 |
tktB |
-16.90 |
0.006168 |
210 -- 248 |
39 -- 78 |
transketolase 2 thiamine triphosphate-binding |
|
_____________209__________________________________________249\n_____________|____________________________________________|\n5'-AGU...CCCGA______CU______AU________CG___________UAU____GCGGU...CUG-3'\n______________AAAGAC__UGC_CA__GCGAUUCG______CACUCAG___GGAU\n______________||||||__|:|_||__||:|||||______|||||||___||||\n______________UUUCUG__AUG_GU__CGUUAAGC______GUGAGUC___CCUA\n3'-UUU...ACCCG___________U__GU________AACAAA_______C______AAGGU...GCA-5'\n_____________|____________________________________________|\n_____________79___________________________________________38\n |
235 -- 241 |
44 -- 50 |
-32.1578 kcal/mol |
10.4844 kcal/mol |
4.77966 kcal/mol |
209 249@LB@ | |@LB@5'-AGU...CCCGA CU AU CG UAU GCGGU...CUG-3'@LB@ AAAGAC UGC CA GCGAUUCG CACUCAG GGAU@LB@ |||||| |:| || ||:||||| ||||||| ||||@LB@ UUUCUG AUG GU CGUUAAGC GUGAGUC CCUA@LB@3'-UUU...ACCCG U GU AACAAA C AAGGU...GCA-5'@LB@ | |@LB@ 79 38@LB@@LB@@LB@Energy -16.90 kcal/mol@LB@Hybridization Energy -32.1578 kcal/mol@LB@Unfolding Energy - mRNA 10.4844 kcal/mol@LB@Unfolding Energy - sRNA 4.77966 kcal/mol@LB@@LB@Position - mRNA 210 -- 248@LB@Position - sRNA 39 -- 78@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 46 |
0.001357 |
0.1038 |
b1235 |
rssB |
-13.33 |
0.053430 |
184 -- 194 |
40 -- 50 |
PcnB-degradosome interaction factor; response regulator |
|
_____________183_________195\n_____________|___________|\n5'-AAU...AAAGC__G________GAGAA...CAA-3'\n______________CA_UCAGGGGA\n______________||_||||||||\n______________GU_AGUCCCCU\n3'-UUU...ACAAA__G________AAAGG...GCA-5'\n_____________|___________|\n_____________51__________39\n |
188 -- 194 |
40 -- 46 |
-19.1981 kcal/mol |
4.11697 kcal/mol |
1.75243 kcal/mol |
183 195@LB@ | |@LB@5'-AAU...AAAGC G GAGAA...CAA-3'@LB@ CA UCAGGGGA@LB@ || ||||||||@LB@ GU AGUCCCCU@LB@3'-UUU...ACAAA G AAAGG...GCA-5'@LB@ | |@LB@ 51 39@LB@@LB@@LB@Energy -13.33 kcal/mol@LB@Hybridization Energy -19.1981 kcal/mol@LB@Unfolding Energy - mRNA 4.11697 kcal/mol@LB@Unfolding Energy - sRNA 1.75243 kcal/mol@LB@@LB@Position - mRNA 184 -- 194@LB@Position - sRNA 40 -- 50@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 47 |
0.001402 |
0.105 |
b2297 |
pta |
-18.38 |
0.002042 |
9 -- 40 |
45 -- 75 |
phosphate acetyltransferase |
|
_____________8__________________________________41\n_____________|__________________________________|\n___5'-CGCAACCU_________UUU______A__UG___________ACAAA...GUC-3'\n______________GGCUGCACG___CGGCAA_UC___GUUUCA_UCA\n______________|:||:|||:___|:||||_||___||||||_|||\n______________CUGAUGUGU___GUCGUU_AG___CAAAGU_AGU\n3'-UUU...CGUUU__________________A__CAA______G___CCCCU...GCA-5'\n_____________|__________________________________|\n_____________76_________________________________44\n |
11 -- 17 |
67 -- 73 |
-26.9548 kcal/mol |
4.83173 kcal/mol |
3.74078 kcal/mol |
8 41@LB@ | |@LB@ 5'-CGCAACCU UUU A UG ACAAA...GUC-3'@LB@ GGCUGCACG CGGCAA UC GUUUCA UCA@LB@ |:||:|||: |:|||| || |||||| |||@LB@ CUGAUGUGU GUCGUU AG CAAAGU AGU@LB@3'-UUU...CGUUU A CAA G CCCCU...GCA-5'@LB@ | |@LB@ 76 44@LB@@LB@@LB@Energy -18.38 kcal/mol@LB@Hybridization Energy -26.9548 kcal/mol@LB@Unfolding Energy - mRNA 4.83173 kcal/mol@LB@Unfolding Energy - sRNA 3.74078 kcal/mol@LB@@LB@Position - mRNA 9 -- 40@LB@Position - sRNA 45 -- 75@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 48 |
0.001595 |
0.1153 |
b4567 |
yjjZ |
-9.54 |
0.291590 |
92 -- 131 |
37 -- 74 |
uncharacterized protein |
|
_____________91_______________________________________132\n_____________|________________________________________|\n5'-CGG...UGAUU____AU_________AG___UACC__AUAG__A_______AUCUG...GGA-3'\n______________GCUA__CAUAGCGAU__GUU____CG____CA_GGGAUUU\n______________:|||__||:|||:||__|||____|:____||_|||||||\n______________UGAU__GUGUCGUUA__CAA____GU____GU_CCCUAAA\n3'-UUU...GUUUC____GU_________AG___CAAA__GA____C_______GGUAC...GCA-5'\n_____________|________________________________________|\n_____________75_______________________________________36\n |
125 -- 131 |
37 -- 43 |
-26.8907 kcal/mol |
12.5776 kcal/mol |
4.77887 kcal/mol |
91 132@LB@ | |@LB@5'-CGG...UGAUU AU AG UACC AUAG A AUCUG...GGA-3'@LB@ GCUA CAUAGCGAU GUU CG CA GGGAUUU@LB@ :||| ||:|||:|| ||| |: || |||||||@LB@ UGAU GUGUCGUUA CAA GU GU CCCUAAA@LB@3'-UUU...GUUUC GU AG CAAA GA C GGUAC...GCA-5'@LB@ | |@LB@ 75 36@LB@@LB@@LB@Energy -9.54 kcal/mol@LB@Hybridization Energy -26.8907 kcal/mol@LB@Unfolding Energy - mRNA 12.5776 kcal/mol@LB@Unfolding Energy - sRNA 4.77887 kcal/mol@LB@@LB@Position - mRNA 92 -- 131@LB@Position - sRNA 37 -- 74@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 49 |
0.00161 |
0.1153 |
b0655 |
gltI |
-14.54 |
0.027470 |
112 -- 169 |
31 -- 74 |
glutamate/aspartate periplasmic binding protein |
|
_____________111________________________________________________________170\n_____________|__________________________________________________________|\n5'-AUU...ACAAC_______AAUAAAGUU____A____AACAACACAAA______CAAC____A_______GUUCU...UGG-3'\n______________ACUGCAC_________GCAG_CGAU___________CACUCA____GGGU_UCCAUGC\n______________|||:|||_________:|||_|:||___________||||||____||:|_|||||||\n______________UGAUGUG_________UGUC_GUUA___________GUGAGU____CCUA_AGGUACG\n3'-UUU...GUUUC_________________________AGCAACAAA________CC______A_______AAUAU...GCA-5'\n_____________|__________________________________________________________|\n_____________75_________________________________________________________30\n |
163 -- 169 |
31 -- 37 |
-33.5884 kcal/mol |
11.7902 kcal/mol |
7.26183 kcal/mol |
111 170@LB@ | |@LB@5'-AUU...ACAAC AAUAAAGUU A AACAACACAAA CAAC A GUUCU...UGG-3'@LB@ ACUGCAC GCAG CGAU CACUCA GGGU UCCAUGC@LB@ |||:||| :||| |:|| |||||| ||:| |||||||@LB@ UGAUGUG UGUC GUUA GUGAGU CCUA AGGUACG@LB@3'-UUU...GUUUC AGCAACAAA CC A AAUAU...GCA-5'@LB@ | |@LB@ 75 30@LB@@LB@@LB@Energy -14.54 kcal/mol@LB@Hybridization Energy -33.5884 kcal/mol@LB@Unfolding Energy - mRNA 11.7902 kcal/mol@LB@Unfolding Energy - sRNA 7.26183 kcal/mol@LB@@LB@Position - mRNA 112 -- 169@LB@Position - sRNA 31 -- 74@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 50 |
0.001668 |
0.1153 |
b2821 |
ptrA |
-10.19 |
0.227412 |
3 -- 12 |
46 -- 55 |
protease III |
|
_____________2__________13\n_____________|__________|\n_________5'-GC__________UAAUC...CCA-3'\n______________UGUUUCGCUU\n______________||||||:||:\n______________ACAAAGUGAG\n3'-UUU...AAGCA__________UCCCC...GCA-5'\n_____________|__________|\n_____________56_________45\n |
6 -- 12 |
46 -- 52 |
-11.8599 kcal/mol |
0.772948 kcal/mol |
0.89782 kcal/mol |
2 13@LB@ | |@LB@ 5'-GC UAAUC...CCA-3'@LB@ UGUUUCGCUU@LB@ ||||||:||:@LB@ ACAAAGUGAG@LB@3'-UUU...AAGCA UCCCC...GCA-5'@LB@ | |@LB@ 56 45@LB@@LB@@LB@Energy -10.19 kcal/mol@LB@Hybridization Energy -11.8599 kcal/mol@LB@Unfolding Energy - mRNA 0.772948 kcal/mol@LB@Unfolding Energy - sRNA 0.89782 kcal/mol@LB@@LB@Position - mRNA 3 -- 12@LB@Position - sRNA 46 -- 55@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 46 -- 52@LB@ |
