121 |
0.01323 |
0.3575 |
b3429 |
glgA |
-14.56 |
0.033318 |
190 -- 240 |
123 -- 176 |
glycogen synthase |
|
_____________189__________________241\n_____________|____________________|\n5'-GUA...AUGCA__________GU________AGAUG...ACG-3'\n______________GGUUUUACAU__AUGUUCAG\n______________|:|||||||:__||::||||\n______________CUAAAAUGUG__UAUGAGUC\n3'-UUU...GCCCA__________GU________AGUGU...UAG-5'\n_____________|____________________|\n_____________177__________________122\n |
219 -- 225 |
174 -- 180 |
-15.9439 kcal/mol |
3.46677 kcal/mol |
4.94566 kcal/mol |
189 241@LB@ | |@LB@5'-GUA...AUGCA GU AGAUG...ACG-3'@LB@ GGUUUUACAU AUGUUCAG@LB@ |:|||||||: ||::||||@LB@ CUAAAAUGUG UAUGAGUC@LB@3'-UUU...GCCCA GU AGUGU...UAG-5'@LB@ | |@LB@ 177 122@LB@@LB@@LB@Energy -14.56 kcal/mol@LB@Hybridization Energy -15.9439 kcal/mol@LB@Unfolding Energy - mRNA 3.46677 kcal/mol@LB@Unfolding Energy - sRNA 4.94566 kcal/mol@LB@@LB@Position - mRNA 190 -- 240@LB@Position - sRNA 123 -- 176@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 174 -- 180@LB@ |
104 |
0.01113 |
0.3575 |
b2108 |
yehA |
-14.54 |
0.033608 |
284 -- 300 |
56 -- 72 |
putative fimbrial-like adhesin protein |
|
_____________283_____________300\n_____________|_______________|\n5'-GUU...CUGUU___________G____-3'\n______________CAGCACAACUU_GUUG\n______________|||||||||||_|:||\n______________GUCGUGUUGAA_CGAC\n3'-UUU...CGUUG___________G____AGCGC...UAG-5'\n_____________|________________|\n_____________73_______________55\n |
289 -- 295 |
61 -- 67 |
-24.1215 kcal/mol |
2.36332 kcal/mol |
11.1531 kcal/mol |
283 300@LB@ | |@LB@5'-GUU...CUGUU G -3'@LB@ CAGCACAACUU GUUG@LB@ ||||||||||| |:||@LB@ GUCGUGUUGAA CGAC@LB@3'-UUU...CGUUG G AGCGC...UAG-5'@LB@ | |@LB@ 73 55@LB@@LB@@LB@Energy -14.54 kcal/mol@LB@Hybridization Energy -24.1215 kcal/mol@LB@Unfolding Energy - mRNA 2.36332 kcal/mol@LB@Unfolding Energy - sRNA 11.1531 kcal/mol@LB@@LB@Position - mRNA 284 -- 300@LB@Position - sRNA 56 -- 72@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 61 -- 67@LB@ |
155 |
0.01733 |
0.3749 |
b3542 |
dppC |
-14.36 |
0.036537 |
40 -- 62 |
74 -- 93 |
dipeptide/heme ABC transporter permease |
|
_____________39_______________________________________________________63\n_____________|________________________________________________________|\n5'-GGG...UCGUC____U__U___C__________UA___C_____GA_______C_____________AGAAG...UCG-3'\n______________AACU_GC_GGU__GAUCUGCUG__CGG_GUGGU___AC_CCG_GUAUUC_GUCAUA\n______________|||:_||_|||__:||||||||__|||_|||:|___||_||:_:||:||_||||:|\n______________UUGG_CG_CCA__UUAGACGAC__GCC_CACUA___UG_GGU_UAUGAG_CAGUGU\n_____3'-UUUUUU____U__U___UA_________C__________AAA__U__________U______GUACU...UAG-5'\n_____________|________________________________________________________|\n_____________94_______________________________________________________73\n |
146 -- 152 |
200 -- 206 |
-46.3163 kcal/mol |
15.5571 kcal/mol |
18.3074 kcal/mol |
39 63@LB@ | |@LB@5'-GGG...UCGUC U U C UA C GA C AGAAG...UCG-3'@LB@ AACU GC GGU GAUCUGCUG CGG GUGGU AC CCG GUAUUC GUCAUA@LB@ |||: || ||| :|||||||| ||| |||:| || ||: :||:|| ||||:|@LB@ UUGG CG CCA UUAGACGAC GCC CACUA UG GGU UAUGAG CAGUGU@LB@ 3'-UUUUUU U U UA C AAA U U GUACU...UAG-5'@LB@ | |@LB@ 94 73@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -46.3163 kcal/mol@LB@Unfolding Energy - mRNA 15.5571 kcal/mol@LB@Unfolding Energy - sRNA 18.3074 kcal/mol@LB@@LB@Position - mRNA 40 -- 62@LB@Position - sRNA 74 -- 93@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 200 -- 206@LB@ |
116 |
0.01276 |
0.3575 |
b2989 |
yghU |
-14.25 |
0.038539 |
247 -- 281 |
170 -- 208 |
putative S-transferase |
|
_____________246______________________________________282\n_____________|________________________________________|\n5'-UUA...GGAUA____C________C_C_UU________________A____CCGGU...CGC-3'\n______________AAUC_GCUGGCGG_G_G______CGCCAAUA_UCA_UCGC\n______________||||_||||||||_|_|______|:||||||_|||_||:|\n______________UUAG_CGACCGCC_C_C______GUGGUUAU_AGU_AGUG\n3'-UUU...CCAUA____A__________A_UAAAAU________G___C____UGUAC...UAG-5'\n_____________|________________________________________|\n_____________209______________________________________169\n |
267 -- 273 |
179 -- 185 |
-35.9489 kcal/mol |
9.63265 kcal/mol |
15.256 kcal/mol |
246 282@LB@ | |@LB@5'-UUA...GGAUA C C C UU A CCGGU...CGC-3'@LB@ AAUC GCUGGCGG G G CGCCAAUA UCA UCGC@LB@ |||| |||||||| | | |:|||||| ||| ||:|@LB@ UUAG CGACCGCC C C GUGGUUAU AGU AGUG@LB@3'-UUU...CCAUA A A UAAAAU G C UGUAC...UAG-5'@LB@ | |@LB@ 209 169@LB@@LB@@LB@Energy -14.25 kcal/mol@LB@Hybridization Energy -35.9489 kcal/mol@LB@Unfolding Energy - mRNA 9.63265 kcal/mol@LB@Unfolding Energy - sRNA 15.256 kcal/mol@LB@@LB@Position - mRNA 247 -- 281@LB@Position - sRNA 170 -- 208@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 179 -- 185@LB@ |
80 |
0.008443 |
0.3551 |
b3791 |
wecE |
-14.19 |
0.039608 |
22 -- 66 |
14 -- 64 |
TDP-4-oxo-6-deoxy-D-glucose transaminase |
|
_____________21______________67\n_____________|_______________|\n5'-GAC...ACCGC_______________GGUGA...CCC-3'\n______________GUACU_GGUUAUACA\n______________:||||_:||:|:|||\n______________UAUGA_UCAGUGUGU\n3'-UUU...GUGGU_____G_________ACUAC...UAG-5'\n_____________|_______________|\n_____________65______________13\n |
185 -- 191 |
167 -- 173 |
-12.5686 kcal/mol |
2.73267 kcal/mol |
0.435744 kcal/mol |
21 67@LB@ | |@LB@5'-GAC...ACCGC GGUGA...CCC-3'@LB@ GUACU GGUUAUACA@LB@ :|||| :||:|:|||@LB@ UAUGA UCAGUGUGU@LB@3'-UUU...GUGGU G ACUAC...UAG-5'@LB@ | |@LB@ 65 13@LB@@LB@@LB@Energy -14.19 kcal/mol@LB@Hybridization Energy -12.5686 kcal/mol@LB@Unfolding Energy - mRNA 2.73267 kcal/mol@LB@Unfolding Energy - sRNA 0.435744 kcal/mol@LB@@LB@Position - mRNA 22 -- 66@LB@Position - sRNA 14 -- 64@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 167 -- 173@LB@ |
68 |
0.00659 |
0.3261 |
b4080 |
mdtP |
-14.15 |
0.040423 |
195 -- 221 |
144 -- 172 |
outer membrane factor of efflux pump |
|
_____________194_______________________________222\n_____________|_________________________________|\n5'-CUG...CAAGG__C_____A________AUC_____________CGUCU...CUC-3'\n______________AG_CACGC_AUGAU_CA_____GUCAACUUUCA\n______________||_|||:|_|||||_||_____|||||||||||\n______________UC_GUGUG_UACUA_GU_____CAGUUGAAAGU\n3'-UUU...AUGAG__A___________C__CCGUU___________CUUAA...UAG-5'\n_____________|_________________________________|\n_____________173_______________________________143\n |
215 -- 221 |
144 -- 150 |
-24.8993 kcal/mol |
3.71866 kcal/mol |
8.07675 kcal/mol |
194 222@LB@ | |@LB@5'-CUG...CAAGG C A AUC CGUCU...CUC-3'@LB@ AG CACGC AUGAU CA GUCAACUUUCA@LB@ || |||:| ||||| || |||||||||||@LB@ UC GUGUG UACUA GU CAGUUGAAAGU@LB@3'-UUU...AUGAG A C CCGUU CUUAA...UAG-5'@LB@ | |@LB@ 173 143@LB@@LB@@LB@Energy -14.15 kcal/mol@LB@Hybridization Energy -24.8993 kcal/mol@LB@Unfolding Energy - mRNA 3.71866 kcal/mol@LB@Unfolding Energy - sRNA 8.07675 kcal/mol@LB@@LB@Position - mRNA 195 -- 221@LB@Position - sRNA 144 -- 172@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 144 -- 150@LB@ |
17 |
0.001014 |
0.2007 |
b4032 |
malG |
-14.09 |
0.041561 |
127 -- 139 |
193 -- 205 |
maltose transporter subunit |
|
_____________126___________140\n_____________|_____________|\n5'-CGU...UCUUC_____________CGCUG...UGG-3'\n______________CUGCUGGUGGGUG\n______________|||||||:|||||\n______________GACGACCGCCCAC\n3'-UUU...UAUUA_____________UAAAA...UAG-5'\n_____________|_____________|\n_____________206___________192\n |
132 -- 138 |
194 -- 200 |
-26.9183 kcal/mol |
7.69341 kcal/mol |
9.06058 kcal/mol |
126 140@LB@ | |@LB@5'-CGU...UCUUC CGCUG...UGG-3'@LB@ CUGCUGGUGGGUG@LB@ |||||||:|||||@LB@ GACGACCGCCCAC@LB@3'-UUU...UAUUA UAAAA...UAG-5'@LB@ | |@LB@ 206 192@LB@@LB@@LB@Energy -14.09 kcal/mol@LB@Hybridization Energy -26.9183 kcal/mol@LB@Unfolding Energy - mRNA 7.69341 kcal/mol@LB@Unfolding Energy - sRNA 9.06058 kcal/mol@LB@@LB@Position - mRNA 127 -- 139@LB@Position - sRNA 193 -- 205@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 194 -- 200@LB@ |
105 |
0.01118 |
0.3575 |
b0439 |
lon |
-14.09 |
0.041610 |
272 -- 293 |
1 -- 24 |
DNA-binding ATP-dependent protease La |
|
_____________271_______294\n_____________|_________|\n5'-AUC...CACAU_________CUUAU...GGG-3'\n______________GGUCAUCCC\n______________|||||||||\n______________CCAGUAGGG\n3'-UUU...UAACG_________UGACG...UAG-5'\n_____________|_________|\n_____________25________0\n |
277 -- 283 |
128 -- 134 |
-16.7868 kcal/mol |
1.03204 kcal/mol |
4.55487 kcal/mol |
271 294@LB@ | |@LB@5'-AUC...CACAU CUUAU...GGG-3'@LB@ GGUCAUCCC@LB@ |||||||||@LB@ CCAGUAGGG@LB@3'-UUU...UAACG UGACG...UAG-5'@LB@ | |@LB@ 25 0@LB@@LB@@LB@Energy -14.09 kcal/mol@LB@Hybridization Energy -16.7868 kcal/mol@LB@Unfolding Energy - mRNA 1.03204 kcal/mol@LB@Unfolding Energy - sRNA 4.55487 kcal/mol@LB@@LB@Position - mRNA 272 -- 293@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 128 -- 134@LB@ |
169 |
0.01937 |
0.3812 |
b4557 |
yidD |
-14.07 |
0.041992 |
2 -- 13 |
11 -- 22 |
membrane protein insertion efficiency factor UPF0161 family inner membrane protein |
|
_____________1______________________14\n_____________|______________________|\n__________5'-C____________GUAUCG____UUACA...UCA-3'\n______________UGGGGCAUCCCC_______GUC\n______________|||||||:||||_______:||\n______________ACCCCGUGGGGG_______UAG\n3'-UUU...UGCGU____________AACGAAG___-5'\n_____________|_____________________|\n_____________23____________________11\n |
7 -- 13 |
11 -- 17 |
-28.608 kcal/mol |
8.24927 kcal/mol |
10.7363 kcal/mol |
1 14@LB@ | |@LB@ 5'-C GUAUCG UUACA...UCA-3'@LB@ UGGGGCAUCCCC GUC@LB@ |||||||:|||| :||@LB@ ACCCCGUGGGGG UAG@LB@3'-UUU...UGCGU AACGAAG -5'@LB@ | |@LB@ 23 11@LB@@LB@@LB@Energy -14.07 kcal/mol@LB@Hybridization Energy -28.608 kcal/mol@LB@Unfolding Energy - mRNA 8.24927 kcal/mol@LB@Unfolding Energy - sRNA 10.7363 kcal/mol@LB@@LB@Position - mRNA 2 -- 13@LB@Position - sRNA 11 -- 22@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 11 -- 17@LB@ |
34 |
0.002769 |
0.2736 |
b2416 |
ptsI |
-14.05 |
0.042463 |
178 -- 225 |
128 -- 177 |
PEP-protein phosphotransferase of PTS system (enzyme I) |
|
_____________177_________________________________________226\n_____________|___________________________________________|\n5'-GUG...AAAAA_________AGUAAGGUAGGGU______UU______UU_____AUCCC...CCG-3'\n______________UCAGUCACA_____________UAUGAU__CAGGCA__UUAGC\n______________|||||||||_____________:|||||__||||||__|:|:|\n______________AGUCAGUGU_____________GUACUA__GUCCGU__AGUUG\n3'-UUU...UUAUG____________________________C_______UC_____AAAGU...UAG-5'\n_____________|___________________________________________|\n_____________178_________________________________________127\n |
180 -- 186 |
169 -- 175 |
-30.6202 kcal/mol |
5.78851 kcal/mol |
8.17404 kcal/mol |
177 226@LB@ | |@LB@5'-GUG...AAAAA AGUAAGGUAGGGU UU UU AUCCC...CCG-3'@LB@ UCAGUCACA UAUGAU CAGGCA UUAGC@LB@ ||||||||| :||||| |||||| |:|:|@LB@ AGUCAGUGU GUACUA GUCCGU AGUUG@LB@3'-UUU...UUAUG C UC AAAGU...UAG-5'@LB@ | |@LB@ 178 127@LB@@LB@@LB@Energy -14.05 kcal/mol@LB@Hybridization Energy -30.6202 kcal/mol@LB@Unfolding Energy - mRNA 5.78851 kcal/mol@LB@Unfolding Energy - sRNA 8.17404 kcal/mol@LB@@LB@Position - mRNA 178 -- 225@LB@Position - sRNA 128 -- 177@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 169 -- 175@LB@ |