| 106 |
0.02722 |
0.6733 |
lmo1616 |
N/A |
-15.61 |
0.075454 |
67 -- 108 |
167 -- 211 |
|
|
_____________66______________________109\n_____________|_______________________|\n5'-AAG...AUAAC_____U_____GACU________AGGGC...UUU-3'\n______________GAACA_AUGUU____UGACUAGU\n______________:||||_||||:____||||||||\n______________UUUGU_UACAG____ACUGAUCA\n3'-GUU...ACAGA_____C_________________ACGGU...GGA-5'\n_____________|_______________________|\n_____________212_____________________166\n |
90 -- 96 |
117 -- 123 |
-17.5219 kcal/mol |
5.32799 kcal/mol |
5.058 kcal/mol |
66 109@LB@ | |@LB@5'-AAG...AUAAC U GACU AGGGC...UUU-3'@LB@ GAACA AUGUU UGACUAGU@LB@ :|||| ||||: ||||||||@LB@ UUUGU UACAG ACUGAUCA@LB@3'-GUU...ACAGA C ACGGU...GGA-5'@LB@ | |@LB@ 212 166@LB@@LB@@LB@Energy -15.61 kcal/mol@LB@Hybridization Energy -17.5219 kcal/mol@LB@Unfolding Energy - mRNA 5.32799 kcal/mol@LB@Unfolding Energy - sRNA 5.058 kcal/mol@LB@@LB@Position - mRNA 67 -- 108@LB@Position - sRNA 167 -- 211@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 117 -- 123@LB@ |
| 134 |
0.0358 |
0.6968 |
lmo2682 |
kdpA |
-15.50 |
0.078936 |
69 -- 121 |
151 -- 202 |
potassium-transporting ATPase subunit A |
|
_____________68_____________________________________________122\n_____________|______________________________________________|\n5'-ACA...UUGGU___AU___UG_____AAGAG______G___________CG______GGGUG...AAA-3'\n______________AGG__UAG__GUGGA_____UACGGU_AA_GGGGUGAA__GAAAAU\n______________|||__|||__:||:|_____:||||:_||_|:|:||||__|||||:\n______________UCC__AUC__UACUU_____GUGCCG_UU_CUCUACUU__CUUUUG\n3'-GUU...CCUAC___GU___UG_____GAU________G__A________A_______UUUAU...GGA-5'\n_____________|______________________________________________|\n_____________203____________________________________________150\n |
102 -- 108 |
163 -- 169 |
-34.0107 kcal/mol |
9.08348 kcal/mol |
13.9626 kcal/mol |
68 122@LB@ | |@LB@5'-ACA...UUGGU AU UG AAGAG G CG GGGUG...AAA-3'@LB@ AGG UAG GUGGA UACGGU AA GGGGUGAA GAAAAU@LB@ ||| ||| :||:| :||||: || |:|:|||| |||||:@LB@ UCC AUC UACUU GUGCCG UU CUCUACUU CUUUUG@LB@3'-GUU...CCUAC GU UG GAU G A A UUUAU...GGA-5'@LB@ | |@LB@ 203 150@LB@@LB@@LB@Energy -15.50 kcal/mol@LB@Hybridization Energy -34.0107 kcal/mol@LB@Unfolding Energy - mRNA 9.08348 kcal/mol@LB@Unfolding Energy - sRNA 13.9626 kcal/mol@LB@@LB@Position - mRNA 69 -- 121@LB@Position - sRNA 151 -- 202@LB@Position Seed - mRNA 102 -- 108@LB@Position Seed - sRNA 163 -- 169@LB@ |
| 114 |
0.02972 |
0.6968 |
lmo2166 |
N/A |
-15.48 |
0.079589 |
75 -- 119 |
153 -- 198 |
lmo2166 |
|
_____________74_________________________________________________120\n_____________|__________________________________________________|\n5'-GGA...UAUUC___U_____UG___U______CAU________________AA________ACCCA...AAA-3'\n______________AGG_CAUGG__AUG_AACUAC___CGGUCA______UGAA__GAAGACAA\n______________|||_|||:|__|||_||||||___|||:||______||||__|||:||||\n______________UCC_GUAUC__UAC_UUGAUG___GCCGGU______ACUU__CUUUUGUU\n3'-GUU...CCUAC_________UG__________U________UACUCU____A_________UAUUA...GGA-5'\n_____________|__________________________________________________|\n_____________199________________________________________________152\n |
112 -- 118 |
154 -- 160 |
-33.2648 kcal/mol |
10.6544 kcal/mol |
13.9801 kcal/mol |
74 120@LB@ | |@LB@5'-GGA...UAUUC U UG U CAU AA ACCCA...AAA-3'@LB@ AGG CAUGG AUG AACUAC CGGUCA UGAA GAAGACAA@LB@ ||| |||:| ||| |||||| |||:|| |||| |||:||||@LB@ UCC GUAUC UAC UUGAUG GCCGGU ACUU CUUUUGUU@LB@3'-GUU...CCUAC UG U UACUCU A UAUUA...GGA-5'@LB@ | |@LB@ 199 152@LB@@LB@@LB@Energy -15.48 kcal/mol@LB@Hybridization Energy -33.2648 kcal/mol@LB@Unfolding Energy - mRNA 10.6544 kcal/mol@LB@Unfolding Energy - sRNA 13.9801 kcal/mol@LB@@LB@Position - mRNA 75 -- 119@LB@Position - sRNA 153 -- 198@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 154 -- 160@LB@ |
| 54 |
0.01218 |
0.6043 |
lmo0065 |
N/A |
-17.22 |
0.037093 |
77 -- 100 |
146 -- 171 |
lmo0065 |
|
_____________76_________________________101\n_____________|__________________________|\n5'-GUA...GCAUU____________________U_____UGGUA...CUA-3'\n______________UGAGAUG___GAAGACAAAU_AAUGA\n______________|||||||___|||:||||||_|||||\n______________ACUCUAC___CUUUUGUUUA_UUACU\n3'-GUU...CGGUU_______UUA________________AAAAC...GGA-5'\n_____________|__________________________|\n_____________172________________________145\n |
87 -- 93 |
152 -- 158 |
-20.9762 kcal/mol |
2.94176 kcal/mol |
5.93625 kcal/mol |
76 101@LB@ | |@LB@5'-GUA...GCAUU U UGGUA...CUA-3'@LB@ UGAGAUG GAAGACAAAU AAUGA@LB@ ||||||| |||:|||||| |||||@LB@ ACUCUAC CUUUUGUUUA UUACU@LB@3'-GUU...CGGUU UUA AAAAC...GGA-5'@LB@ | |@LB@ 172 145@LB@@LB@@LB@Energy -17.22 kcal/mol@LB@Hybridization Energy -20.9762 kcal/mol@LB@Unfolding Energy - mRNA 2.94176 kcal/mol@LB@Unfolding Energy - sRNA 5.93625 kcal/mol@LB@@LB@Position - mRNA 77 -- 100@LB@Position - sRNA 146 -- 171@LB@Position Seed - mRNA 87 -- 93@LB@Position Seed - sRNA 152 -- 158@LB@ |
| 86 |
0.02293 |
0.6733 |
lmo0853 |
N/A |
-17.72 |
0.029549 |
77 -- 124 |
163 -- 214 |
SugE protein |
|
_____________76__________________________________________________________125\n_____________|___________________________________________________________|\n5'-GAC...CGUUU________CUUCU______AC__________________________AUUUAU______ACGGA...UUU-3'\n______________UUUAUGCA_____UGAUGG__UGA_GUGUGGA________ACACGGC______GAUGAA\n______________::||||||_____|:|:||__|||_|::|:||________|||||||______||||||\n______________GGAUACGU_____AUUGCC__ACU_CGUAUCU________UGUGCCG______CUACUU\n3'-GUU...CCCGC___________________CU___C_______GUACUUGA_______GUUACU______ACUUU...GGA-5'\n_____________|___________________________________________________________|\n_____________215_________________________________________________________162\n |
106 -- 112 |
175 -- 181 |
-38.3816 kcal/mol |
10.3843 kcal/mol |
19.6349 kcal/mol |
76 125@LB@ | |@LB@5'-GAC...CGUUU CUUCU AC AUUUAU ACGGA...UUU-3'@LB@ UUUAUGCA UGAUGG UGA GUGUGGA ACACGGC GAUGAA@LB@ ::|||||| |:|:|| ||| |::|:|| ||||||| ||||||@LB@ GGAUACGU AUUGCC ACU CGUAUCU UGUGCCG CUACUU@LB@3'-GUU...CCCGC CU C GUACUUGA GUUACU ACUUU...GGA-5'@LB@ | |@LB@ 215 162@LB@@LB@@LB@Energy -17.72 kcal/mol@LB@Hybridization Energy -38.3816 kcal/mol@LB@Unfolding Energy - mRNA 10.3843 kcal/mol@LB@Unfolding Energy - sRNA 19.6349 kcal/mol@LB@@LB@Position - mRNA 77 -- 124@LB@Position - sRNA 163 -- 214@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 175 -- 181@LB@ |
| 135 |
0.03605 |
0.6968 |
lmo1003 |
N/A |
-16.96 |
0.041836 |
78 -- 154 |
154 -- 221 |
phosphotransferase system enzyme I |
|
_____________77_______________________________________________________________________________________155\n_____________|________________________________________________________________________________________|\n5'-GUG...CUUAA____AUCA_____________CUCUUG___U___UAA______CU_____UACUAU______U_AA___A_C______AAA_______UUGAA...AAG-3'\n______________AUCA____UGGGCG_UUAUGU______GUA_UGG____AGGCG__GACAU______CUACAC_G__GGU_G_GAUGAA___GAAGCAA\n______________||||____:|||||_:||||:______:||_:||____||||:__|||||______||||||_|__::|_|_||||||___:||:|||\n______________UAGU____GCCCGC_GAUACG______UAU_GCC____UCCGU__CUGUA______GAUGUG_C__UUA_C_CUACUU___UUUUGUU\n3'-GUU...AACGG____ACAA______G_______________U___CUAC_____AU_____CUU_________C_GG_____U______AC________UAUUA...GGA-5'\n_____________|________________________________________________________________________________________|\n_____________222______________________________________________________________________________________153\n |
148 -- 154 |
154 -- 160 |
-50.8348 kcal/mol |
18.1196 kcal/mol |
22.592 kcal/mol |
77 155@LB@ | |@LB@5'-GUG...CUUAA AUCA CUCUUG U UAA CU UACUAU U AA A C AAA UUGAA...AAG-3'@LB@ AUCA UGGGCG UUAUGU GUA UGG AGGCG GACAU CUACAC G GGU G GAUGAA GAAGCAA@LB@ |||| :||||| :||||: :|| :|| ||||: ||||| |||||| | ::| | |||||| :||:|||@LB@ UAGU GCCCGC GAUACG UAU GCC UCCGU CUGUA GAUGUG C UUA C CUACUU UUUUGUU@LB@3'-GUU...AACGG ACAA G U CUAC AU CUU C GG U AC UAUUA...GGA-5'@LB@ | |@LB@ 222 153@LB@@LB@@LB@Energy -16.96 kcal/mol@LB@Hybridization Energy -50.8348 kcal/mol@LB@Unfolding Energy - mRNA 18.1196 kcal/mol@LB@Unfolding Energy - sRNA 22.592 kcal/mol@LB@@LB@Position - mRNA 78 -- 154@LB@Position - sRNA 154 -- 221@LB@Position Seed - mRNA 148 -- 154@LB@Position Seed - sRNA 154 -- 160@LB@ |
| 143 |
0.03726 |
0.6968 |
lmo2701 |
N/A |
-17.97 |
0.026314 |
78 -- 126 |
156 -- 198 |
|
|
_____________77_________________________________________________127\n_____________|__________________________________________________|\n5'-GAA...CCUUC_______AAAGUA___A____AGC________UUCCA_____________UUAGA...UCA-3'\n______________AGGCAUA______ACG_GAAU___GCAUGGCC______GUGGGUGGAGAC\n______________|||||||______||:_|||:___:||:||||______:||::||:|:||\n______________UCCGUAU______UGU_CUUG___UGUGCCGG______UACUUACUUUUG\n3'-GUU...CCUAC_______C________A____A__________UUACUC____________UUUAU...GGA-5'\n_____________|__________________________________________________|\n_____________199________________________________________________155\n |
120 -- 126 |
156 -- 162 |
-37.6493 kcal/mol |
12.7788 kcal/mol |
13.9626 kcal/mol |
77 127@LB@ | |@LB@5'-GAA...CCUUC AAAGUA A AGC UUCCA UUAGA...UCA-3'@LB@ AGGCAUA ACG GAAU GCAUGGCC GUGGGUGGAGAC@LB@ ||||||| ||: |||: :||:|||| :||::||:|:||@LB@ UCCGUAU UGU CUUG UGUGCCGG UACUUACUUUUG@LB@3'-GUU...CCUAC C A A UUACUC UUUAU...GGA-5'@LB@ | |@LB@ 199 155@LB@@LB@@LB@Energy -17.97 kcal/mol@LB@Hybridization Energy -37.6493 kcal/mol@LB@Unfolding Energy - mRNA 12.7788 kcal/mol@LB@Unfolding Energy - sRNA 13.9626 kcal/mol@LB@@LB@Position - mRNA 78 -- 126@LB@Position - sRNA 156 -- 198@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 156 -- 162@LB@ |
| 109 |
0.02745 |
0.6733 |
lmo0843 |
N/A |
-19.30 |
0.014041 |
79 -- 127 |
106 -- 151 |
|
|
_____________78____________________________________________________128\n_____________|_____________________________________________________|\n5'-CCG...GUCCA____C_________________________AUAAUUU__U_____________CCCUG...CUG-3'\n______________AGUG_UUUUGGUG_CU_GAC_GAUGUUUGA_______CU__UUGCCAUUUUAU\n______________|:||_||||||||_||_:||_|||||:|||_______||__||||||||:|||\n______________UUAC_AAAACCAC_GA_UUG_CUACAGACU_______GA__AACGGUAAGAUA\n3'-GUU...GUUUA____U________A__U___U__________________UC____________ACCUU...GGA-5'\n_____________|_____________________________________________________|\n_____________152___________________________________________________105\n |
118 -- 124 |
109 -- 115 |
-38.6588 kcal/mol |
9.72702 kcal/mol |
18.7291 kcal/mol |
78 128@LB@ | |@LB@5'-CCG...GUCCA C AUAAUUU U CCCUG...CUG-3'@LB@ AGUG UUUUGGUG CU GAC GAUGUUUGA CU UUGCCAUUUUAU@LB@ |:|| |||||||| || :|| |||||:||| || ||||||||:|||@LB@ UUAC AAAACCAC GA UUG CUACAGACU GA AACGGUAAGAUA@LB@3'-GUU...GUUUA U A U U UC ACCUU...GGA-5'@LB@ | |@LB@ 152 105@LB@@LB@@LB@Energy -19.30 kcal/mol@LB@Hybridization Energy -38.6588 kcal/mol@LB@Unfolding Energy - mRNA 9.72702 kcal/mol@LB@Unfolding Energy - sRNA 18.7291 kcal/mol@LB@@LB@Position - mRNA 79 -- 127@LB@Position - sRNA 106 -- 151@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 109 -- 115@LB@ |
| 107 |
0.02737 |
0.6733 |
lmo1575 |
N/A |
-17.23 |
0.037041 |
80 -- 118 |
156 -- 205 |
|
|
_____________79______119\n_____________|_______|\n5'-GUA...UCACA_______C-3'\n______________AAUGGGG\n______________||:|||:\n______________UUGCCCU\n3'-GUU...ACGUA_______ACUCC...GGA-5'\n_____________|_______|\n_____________206_____155\n |
293 -- 299 |
201 -- 207 |
-8.20946 kcal/mol |
0.611387 kcal/mol |
0.326294 kcal/mol |
79 119@LB@ | |@LB@5'-GUA...UCACA C-3'@LB@ AAUGGGG@LB@ ||:|||:@LB@ UUGCCCU@LB@3'-GUU...ACGUA ACUCC...GGA-5'@LB@ | |@LB@ 206 155@LB@@LB@@LB@Energy -17.23 kcal/mol@LB@Hybridization Energy -8.20946 kcal/mol@LB@Unfolding Energy - mRNA 0.611387 kcal/mol@LB@Unfolding Energy - sRNA 0.326294 kcal/mol@LB@@LB@Position - mRNA 80 -- 118@LB@Position - sRNA 156 -- 205@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 201 -- 207@LB@ |
| 97 |
0.02539 |
0.6733 |
lmo2585 |
N/A |
-13.14 |
0.201793 |
84 -- 125 |
164 -- 211 |
|
|
_____________83______126\n_____________|_______|\n5'-ACA...GAUGC_______AAGGG...AAG-3'\n______________GGCGGGA\n______________::|||||\n______________UUGCCCU\n3'-GUU...ACGUA_______ACUCC...GGA-5'\n_____________|_______|\n_____________212_____163\n |
178 -- 184 |
201 -- 207 |
-10.7547 kcal/mol |
3.27081 kcal/mol |
0.326294 kcal/mol |
83 126@LB@ | |@LB@5'-ACA...GAUGC AAGGG...AAG-3'@LB@ GGCGGGA@LB@ ::|||||@LB@ UUGCCCU@LB@3'-GUU...ACGUA ACUCC...GGA-5'@LB@ | |@LB@ 212 163@LB@@LB@@LB@Energy -13.14 kcal/mol@LB@Hybridization Energy -10.7547 kcal/mol@LB@Unfolding Energy - mRNA 3.27081 kcal/mol@LB@Unfolding Energy - sRNA 0.326294 kcal/mol@LB@@LB@Position - mRNA 84 -- 125@LB@Position - sRNA 164 -- 211@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 201 -- 207@LB@ |
