| 123 |
0.03258 |
0.6968 |
lmo1821 |
N/A |
-14.83 |
0.104144 |
189 -- 278 |
153 -- 220 |
phosphoprotein phosphatase |
|
_____________188_________279\n_____________|___________|\n5'-AGA...AUCAU___________CGGCG...UUG-3'\n______________AAUGAAGACAA\n______________||||||:||||\n______________UUACUUUUGUU\n3'-GUU...UCUAC___________UAUUA...GGA-5'\n_____________|___________|\n_____________221_________152\n |
250 -- 256 |
154 -- 160 |
-9.76744 kcal/mol |
1.01794 kcal/mol |
0.610258 kcal/mol |
188 279@LB@ | |@LB@5'-AGA...AUCAU CGGCG...UUG-3'@LB@ AAUGAAGACAA@LB@ ||||||:||||@LB@ UUACUUUUGUU@LB@3'-GUU...UCUAC UAUUA...GGA-5'@LB@ | |@LB@ 221 152@LB@@LB@@LB@Energy -14.83 kcal/mol@LB@Hybridization Energy -9.76744 kcal/mol@LB@Unfolding Energy - mRNA 1.01794 kcal/mol@LB@Unfolding Energy - sRNA 0.610258 kcal/mol@LB@@LB@Position - mRNA 189 -- 278@LB@Position - sRNA 153 -- 220@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 154 -- 160@LB@ |
| 156 |
0.04133 |
0.7058 |
lmo1481 |
holA |
-16.45 |
0.052293 |
189 -- 224 |
151 -- 199 |
DNA polymerase III subunit delta |
|
_____________188_________225\n_____________|___________|\n5'-CAA...UGCCA___________GAUAC...UUU-3'\n______________GAAUGGAAACA\n______________|||||:|||||\n______________CUUACUUUUGU\n3'-GUU...CUCUA___________UUAUU...GGA-5'\n_____________|___________|\n_____________200_________150\n |
213 -- 219 |
156 -- 162 |
-12.8572 kcal/mol |
1.78423 kcal/mol |
0.853601 kcal/mol |
188 225@LB@ | |@LB@5'-CAA...UGCCA GAUAC...UUU-3'@LB@ GAAUGGAAACA@LB@ |||||:|||||@LB@ CUUACUUUUGU@LB@3'-GUU...CUCUA UUAUU...GGA-5'@LB@ | |@LB@ 200 150@LB@@LB@@LB@Energy -16.45 kcal/mol@LB@Hybridization Energy -12.8572 kcal/mol@LB@Unfolding Energy - mRNA 1.78423 kcal/mol@LB@Unfolding Energy - sRNA 0.853601 kcal/mol@LB@@LB@Position - mRNA 189 -- 224@LB@Position - sRNA 151 -- 199@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 156 -- 162@LB@ |
| 165 |
0.04532 |
0.7392 |
lmo2091 |
argH |
-16.36 |
0.054421 |
189 -- 262 |
141 -- 199 |
argininosuccinate lyase |
|
_____________188_________________263\n_____________|___________________|\n5'-UCA...GGUCA_______G__GAG______AAAUC...AAG-3'\n______________UGCCAUU_UA___GGAAGA\n______________|||||||_||___||||||\n______________ACGGUAA_AU___CCUUCU\n3'-GUU...GAUCA_______G__AA_______ACCUA...GGA-5'\n_____________|___________________|\n_____________200_________________140\n |
20 -- 26 |
110 -- 116 |
-20.7676 kcal/mol |
3.64063 kcal/mol |
5.20705 kcal/mol |
188 263@LB@ | |@LB@5'-UCA...GGUCA G GAG AAAUC...AAG-3'@LB@ UGCCAUU UA GGAAGA@LB@ ||||||| || ||||||@LB@ ACGGUAA AU CCUUCU@LB@3'-GUU...GAUCA G AA ACCUA...GGA-5'@LB@ | |@LB@ 200 140@LB@@LB@@LB@Energy -16.36 kcal/mol@LB@Hybridization Energy -20.7676 kcal/mol@LB@Unfolding Energy - mRNA 3.64063 kcal/mol@LB@Unfolding Energy - sRNA 5.20705 kcal/mol@LB@@LB@Position - mRNA 189 -- 262@LB@Position - sRNA 141 -- 199@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 110 -- 116@LB@ |
| 56 |
0.01257 |
0.6043 |
lmo2205 |
N/A |
-16.72 |
0.046467 |
190 -- 249 |
147 -- 203 |
phosphoglyceromutase |
|
_____________189_____________________250\n_____________|_______________________|\n5'-AUG...GCGAA____GAA________________AAUUA...UGG-3'\n______________AAUG___GGAUGAG_GAAGAUGA\n______________||||___:|||||:_|||:|::|\n______________UUAC___UCUACUU_CUUUUGUU\n3'-GUU...GCCGG______________A________UAUUA...GGA-5'\n_____________|_______________________|\n_____________204_____________________146\n |
197 -- 203 |
155 -- 161 |
-13.1674 kcal/mol |
1.25432 kcal/mol |
0.959215 kcal/mol |
189 250@LB@ | |@LB@5'-AUG...GCGAA GAA AAUUA...UGG-3'@LB@ AAUG GGAUGAG GAAGAUGA@LB@ |||| :|||||: |||:|::|@LB@ UUAC UCUACUU CUUUUGUU@LB@3'-GUU...GCCGG A UAUUA...GGA-5'@LB@ | |@LB@ 204 146@LB@@LB@@LB@Energy -16.72 kcal/mol@LB@Hybridization Energy -13.1674 kcal/mol@LB@Unfolding Energy - mRNA 1.25432 kcal/mol@LB@Unfolding Energy - sRNA 0.959215 kcal/mol@LB@@LB@Position - mRNA 190 -- 249@LB@Position - sRNA 147 -- 203@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 155 -- 161@LB@ |
| 99 |
0.02562 |
0.6733 |
lmo2201 |
N/A |
-18.35 |
0.022079 |
190 -- 255 |
101 -- 170 |
3-oxoacyl-ACP synthase |
|
_____________189_____________________________________________________________________256\n_____________|_______________________________________________________________________|\n5'-AAC...AUAAG________________________GAAGA__A___GUU__U______G__GCU___A___C__________ACGAU...AUG-3'\n______________GAGAUGAGU__AAAUGGAUAA_GA_____GU_GUU___AC_GGUGUU_GA___GUU__CA__CUAUUGGAA\n______________|||||||:|__|||:::||||_||_____||_||:___||_|:|||:_||___|||__||__|||||||||\n______________CUCUACUUA__UUUGUUUAUU_CU_____CA_CAG___UG_CUACAG_CU___CAA__GU__GAUAACCUU\n3'-GUU...GGUUA_________CU__________A__AAAAC______AUU__U______A__GAU___CG__AA_________CUACC...GGA-5'\n_____________|_______________________________________________________________________|\n_____________171_____________________________________________________________________100\n |
249 -- 255 |
101 -- 107 |
-41.8612 kcal/mol |
11.5076 kcal/mol |
19.339 kcal/mol |
189 256@LB@ | |@LB@5'-AAC...AUAAG GAAGA A GUU U G GCU A C ACGAU...AUG-3'@LB@ GAGAUGAGU AAAUGGAUAA GA GU GUU AC GGUGUU GA GUU CA CUAUUGGAA@LB@ |||||||:| |||:::|||| || || ||: || |:|||: || ||| || |||||||||@LB@ CUCUACUUA UUUGUUUAUU CU CA CAG UG CUACAG CU CAA GU GAUAACCUU@LB@3'-GUU...GGUUA CU A AAAAC AUU U A GAU CG AA CUACC...GGA-5'@LB@ | |@LB@ 171 100@LB@@LB@@LB@Energy -18.35 kcal/mol@LB@Hybridization Energy -41.8612 kcal/mol@LB@Unfolding Energy - mRNA 11.5076 kcal/mol@LB@Unfolding Energy - sRNA 19.339 kcal/mol@LB@@LB@Position - mRNA 190 -- 255@LB@Position - sRNA 101 -- 170@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 181 |
0.05165 |
0.7607 |
lmo2287 |
N/A |
-16.24 |
0.057456 |
190 -- 241 |
154 -- 199 |
tape-measure |
|
_____________189________________________________________________242\n_____________|__________________________________________________|\n5'-UGA...CUGAA________AUAA___AAAA______AG__G_GAACAU_____C_______CAGUA...CAA-3'\n______________AAACAGAU____GUU____GAUUAG__GU_A________GAG_GAUGGAU\n______________||||||||____||:____||:|||__|:_|________||:_|||||||\n______________UUUGUCUA____CAG____CUGAUC__CG_U________CUU_CUACCUA\n3'-GUU...ACAGA_______________A_________AA__G_AAGAUAAC___________UGUGG...GGA-5'\n_____________|__________________________________________________|\n_____________200________________________________________________153\n |
207 -- 213 |
94 -- 100 |
-23.404 kcal/mol |
6.71689 kcal/mol |
9.49359 kcal/mol |
189 242@LB@ | |@LB@5'-UGA...CUGAA AUAA AAAA AG G GAACAU C CAGUA...CAA-3'@LB@ AAACAGAU GUU GAUUAG GU A GAG GAUGGAU@LB@ |||||||| ||: ||:||| |: | ||: |||||||@LB@ UUUGUCUA CAG CUGAUC CG U CUU CUACCUA@LB@3'-GUU...ACAGA A AA G AAGAUAAC UGUGG...GGA-5'@LB@ | |@LB@ 200 153@LB@@LB@@LB@Energy -16.24 kcal/mol@LB@Hybridization Energy -23.404 kcal/mol@LB@Unfolding Energy - mRNA 6.71689 kcal/mol@LB@Unfolding Energy - sRNA 9.49359 kcal/mol@LB@@LB@Position - mRNA 190 -- 241@LB@Position - sRNA 154 -- 199@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 94 -- 100@LB@ |
| 82 |
0.02188 |
0.6733 |
lmo0200 |
prfA |
-17.77 |
0.028863 |
191 -- 222 |
162 -- 204 |
listeriolysin positive regulatory protein |
|
_____________190______223\n_____________|________|\n5'-UCA...AUUGG________ACAUG...AUC-3'\n______________GGGAUGAG\n______________||||||||\n______________CCCUACUC\n3'-GUU...UAUUG________CGUAU...GGA-5'\n_____________|________|\n_____________205______161\n |
192 -- 198 |
197 -- 203 |
-14.1607 kcal/mol |
1.90446 kcal/mol |
0.386531 kcal/mol |
190 223@LB@ | |@LB@5'-UCA...AUUGG ACAUG...AUC-3'@LB@ GGGAUGAG@LB@ ||||||||@LB@ CCCUACUC@LB@3'-GUU...UAUUG CGUAU...GGA-5'@LB@ | |@LB@ 205 161@LB@@LB@@LB@Energy -17.77 kcal/mol@LB@Hybridization Energy -14.1607 kcal/mol@LB@Unfolding Energy - mRNA 1.90446 kcal/mol@LB@Unfolding Energy - sRNA 0.386531 kcal/mol@LB@@LB@Position - mRNA 191 -- 222@LB@Position - sRNA 162 -- 204@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 197 -- 203@LB@ |
| 133 |
0.03548 |
0.6968 |
lmo2772 |
N/A |
-15.87 |
0.067267 |
191 -- 210 |
179 -- 199 |
PTS beta-glucoside transporter subunit IIABC |
|
_____________190__________________211\n_____________|____________________|\n5'-GCG...UUUAG____AU______________AAUCA...AAU-3'\n______________GAGG__UAG_CAUGGACUAC\n______________||||__|||_||||:|||||\n______________CUCC__AUC_GUACUUGAUG\n3'-GUU...CCCUA____GU___U__________UGCCG...GGA-5'\n_____________|____________________|\n_____________200__________________178\n |
203 -- 209 |
180 -- 186 |
-24.3176 kcal/mol |
4.09739 kcal/mol |
10.4768 kcal/mol |
190 211@LB@ | |@LB@5'-GCG...UUUAG AU AAUCA...AAU-3'@LB@ GAGG UAG CAUGGACUAC@LB@ |||| ||| ||||:|||||@LB@ CUCC AUC GUACUUGAUG@LB@3'-GUU...CCCUA GU U UGCCG...GGA-5'@LB@ | |@LB@ 200 178@LB@@LB@@LB@Energy -15.87 kcal/mol@LB@Hybridization Energy -24.3176 kcal/mol@LB@Unfolding Energy - mRNA 4.09739 kcal/mol@LB@Unfolding Energy - sRNA 10.4768 kcal/mol@LB@@LB@Position - mRNA 191 -- 210@LB@Position - sRNA 179 -- 199@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 180 -- 186@LB@ |
| 158 |
0.04144 |
0.7058 |
lmo1958 |
fhuB |
-14.94 |
0.099691 |
191 -- 222 |
150 -- 181 |
ferrichrome ABC transporter permease |
|
_____________190_______________________________223\n_____________|_________________________________|\n5'-GUU...AAGGA_____U__A________A___C___________AAAUG...UCG-3'\n______________ACAUG_GC_GAUG_GAU_AGU_AAAACAGAUAA\n______________|||:|_||_:|||_|||_|:|_||||||:||||\n______________UGUGC_CG_UUAC_CUA_UUA_UUUUGUUUAUU\n3'-GUU...CUUGA________G____U___C___C___________ACUAA...GGA-5'\n_____________|_________________________________|\n_____________182_______________________________149\n |
214 -- 220 |
152 -- 158 |
-22.8664 kcal/mol |
3.81003 kcal/mol |
11.9534 kcal/mol |
190 223@LB@ | |@LB@5'-GUU...AAGGA U A A C AAAUG...UCG-3'@LB@ ACAUG GC GAUG GAU AGU AAAACAGAUAA@LB@ |||:| || :||| ||| |:| ||||||:||||@LB@ UGUGC CG UUAC CUA UUA UUUUGUUUAUU@LB@3'-GUU...CUUGA G U C C ACUAA...GGA-5'@LB@ | |@LB@ 182 149@LB@@LB@@LB@Energy -14.94 kcal/mol@LB@Hybridization Energy -22.8664 kcal/mol@LB@Unfolding Energy - mRNA 3.81003 kcal/mol@LB@Unfolding Energy - sRNA 11.9534 kcal/mol@LB@@LB@Position - mRNA 191 -- 222@LB@Position - sRNA 150 -- 181@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 152 -- 158@LB@ |
| 23 |
0.00382 |
0.4469 |
lmo1572 |
accA |
-20.61 |
0.007329 |
192 -- 226 |
157 -- 188 |
acetyl-CoA carboxylase carboxyltransferase subunit alpha |
|
_____________191______________________________________________________________________________227\n_____________|________________________________________________________________________________|\n5'-AGG...UUUAA__AU______GAAA__A____GA_____________A__UG__________________G___________AUU______ACCGA...CCA-3'\n______________GC__UCAUGU____GC_CCUG___GUAG_GGGGUGA_GU_______________AUGGC_AAUGAGAUGGA___UGAGAA\n______________||__||||||____||_|||:___:||:_|||:|||_|:_______________|:|||_|||||||||:|___|||:||\n______________CG__AGUACA____CG_GGAU___UAUU_CCCUACU_CG_______________UGCCG_UUACUCUACUU___ACUUUU\n3'-GUU...CGCAA__GU______AGCC__C____ACG____G_______C__UAUCUGUACUUGAUG_____G____________________GUUUA...GGA-5'\n_____________|________________________________________________________________________________|\n_____________189______________________________________________________________________________156\n |
211 -- 217 |
163 -- 169 |
-59.1532 kcal/mol |
18.9584 kcal/mol |
22.6787 kcal/mol |
191 227@LB@ | |@LB@5'-AGG...UUUAA AU GAAA A GA A UG G AUU ACCGA...CCA-3'@LB@ GC UCAUGU GC CCUG GUAG GGGGUGA GU AUGGC AAUGAGAUGGA UGAGAA@LB@ || |||||| || |||: :||: |||:||| |: |:||| |||||||||:| |||:||@LB@ CG AGUACA CG GGAU UAUU CCCUACU CG UGCCG UUACUCUACUU ACUUUU@LB@3'-GUU...CGCAA GU AGCC C ACG G C UAUCUGUACUUGAUG G GUUUA...GGA-5'@LB@ | |@LB@ 189 156@LB@@LB@@LB@Energy -20.61 kcal/mol@LB@Hybridization Energy -59.1532 kcal/mol@LB@Unfolding Energy - mRNA 18.9584 kcal/mol@LB@Unfolding Energy - sRNA 22.6787 kcal/mol@LB@@LB@Position - mRNA 192 -- 226@LB@Position - sRNA 157 -- 188@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 163 -- 169@LB@ |
