119 |
0.01215 |
0.3104 |
b3691 |
dgoT |
-8.17 |
0.239341 |
58 -- 68 |
8 -- 21 |
D-galactonate transporter |
|
_____________57_____________69\n_____________|______________|\n5'-GUG...AUGAA______________AGCAG...CCA-3'\n______________GAUAACA___GCGU\n______________|||||||___|||:\n______________CUAUUGU___CGCG\n3'-UUU...UACUA_______UUA____CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
58 -- 64 |
15 -- 21 |
-12.2033 kcal/mol |
2.79285 kcal/mol |
1.23638 kcal/mol |
57 69@LB@ | |@LB@5'-GUG...AUGAA AGCAG...CCA-3'@LB@ GAUAACA GCGU@LB@ ||||||| |||:@LB@ CUAUUGU CGCG@LB@3'-UUU...UACUA UUA CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -8.17 kcal/mol@LB@Hybridization Energy -12.2033 kcal/mol@LB@Unfolding Energy - mRNA 2.79285 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 58 -- 68@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 15 -- 21@LB@ |
102 |
0.01008 |
0.3104 |
b3500 |
gor |
-8.16 |
0.240292 |
285 -- 295 |
4 -- 15 |
glutathione oxidoreductase |
|
_____________284__________296\n_____________|____________|\n5'-GGC...GCCAG____________GAUUG-3'\n______________AAAUGUGCG_CU\n______________|||||:|||_||\n______________UUUACGCGC_GA\n3'-UUU...UAUUG_________A__AAG-5'\n_____________|____________|\n_____________16___________3\n |
287 -- 293 |
7 -- 13 |
-12.6909 kcal/mol |
3.32128 kcal/mol |
1.20666 kcal/mol |
284 296@LB@ | |@LB@5'-GGC...GCCAG GAUUG-3'@LB@ AAAUGUGCG CU@LB@ |||||:||| ||@LB@ UUUACGCGC GA@LB@3'-UUU...UAUUG A AAG-5'@LB@ | |@LB@ 16 3@LB@@LB@@LB@Energy -8.16 kcal/mol@LB@Hybridization Energy -12.6909 kcal/mol@LB@Unfolding Energy - mRNA 3.32128 kcal/mol@LB@Unfolding Energy - sRNA 1.20666 kcal/mol@LB@@LB@Position - mRNA 285 -- 295@LB@Position - sRNA 4 -- 15@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 7 -- 13@LB@ |
141 |
0.01345 |
0.3104 |
b3311 |
rpsQ |
-8.13 |
0.242987 |
140 -- 150 |
8 -- 18 |
30S ribosomal subunit protein S17 |
|
_____________139_________151\n_____________|___________|\n5'-GGU...GUUGA___________CGCGA...UCU-3'\n______________AGCAAGUGCGU\n______________|:|||:||||:\n______________UUGUUUACGCG\n3'-UUU...UACUA___________CAGAAAG-5'\n_____________|___________|\n_____________19__________7\n |
144 -- 150 |
8 -- 14 |
-14.6725 kcal/mol |
5.33741 kcal/mol |
1.20363 kcal/mol |
139 151@LB@ | |@LB@5'-GGU...GUUGA CGCGA...UCU-3'@LB@ AGCAAGUGCGU@LB@ |:|||:||||:@LB@ UUGUUUACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 19 7@LB@@LB@@LB@Energy -8.13 kcal/mol@LB@Hybridization Energy -14.6725 kcal/mol@LB@Unfolding Energy - mRNA 5.33741 kcal/mol@LB@Unfolding Energy - sRNA 1.20363 kcal/mol@LB@@LB@Position - mRNA 140 -- 150@LB@Position - sRNA 8 -- 18@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 8 -- 14@LB@ |
38 |
0.002512 |
0.2224 |
b0436 |
tig |
-7.88 |
0.265562 |
192 -- 204 |
10 -- 21 |
peptidyl-prolyl cis/trans isomerase (trigger factor) |
|
_____________191___________205\n_____________|_____________|\n5'-UAC...UUUGA_______A_____AAGUU...UCA-3'\n______________GGUAACA_GAUGC\n______________|:|||||_:||||\n______________CUAUUGU_UUACG\n3'-UUU...UACUA_____________CGCAG...AAG-5'\n_____________|_____________|\n_____________22____________9\n |
192 -- 198 |
15 -- 21 |
-12.2618 kcal/mol |
3.15229 kcal/mol |
1.23076 kcal/mol |
191 205@LB@ | |@LB@5'-UAC...UUUGA A AAGUU...UCA-3'@LB@ GGUAACA GAUGC@LB@ |:||||| :||||@LB@ CUAUUGU UUACG@LB@3'-UUU...UACUA CGCAG...AAG-5'@LB@ | |@LB@ 22 9@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -12.2618 kcal/mol@LB@Unfolding Energy - mRNA 3.15229 kcal/mol@LB@Unfolding Energy - sRNA 1.23076 kcal/mol@LB@@LB@Position - mRNA 192 -- 204@LB@Position - sRNA 10 -- 21@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 15 -- 21@LB@ |
92 |
0.009361 |
0.3104 |
b3652 |
recG |
-7.88 |
0.265686 |
265 -- 278 |
7 -- 20 |
ATP-dependent DNA helicase |
|
_____________264_____________279\n_____________|_______________|\n5'-CAA...ACUUA________C______AAAAU...UGC-3'\n______________GUAACAAA_UG_GCG\n______________:|||||||_||_|||\n______________UAUUGUUU_AC_CGC\n3'-UUU...ACUAC___________G___AGAAAG-5'\n_____________|_______________|\n_____________21______________6\n |
266 -- 272 |
13 -- 19 |
-11.4583 kcal/mol |
2.34189 kcal/mol |
1.23906 kcal/mol |
264 279@LB@ | |@LB@5'-CAA...ACUUA C AAAAU...UGC-3'@LB@ GUAACAAA UG GCG@LB@ :||||||| || |||@LB@ UAUUGUUU AC CGC@LB@3'-UUU...ACUAC G AGAAAG-5'@LB@ | |@LB@ 21 6@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -11.4583 kcal/mol@LB@Unfolding Energy - mRNA 2.34189 kcal/mol@LB@Unfolding Energy - sRNA 1.23906 kcal/mol@LB@@LB@Position - mRNA 265 -- 278@LB@Position - sRNA 7 -- 20@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 13 -- 19@LB@ |
189 |
0.01853 |
0.3104 |
b3743 |
asnC |
-7.74 |
0.278830 |
255 -- 266 |
5 -- 18 |
transcriptional activator of asnA; autorepressor |
|
_____________254____________267\n_____________|______________|\n5'-AUU...UAAUG______________ACCGC...GCG-3'\n______________GGC_AAUGCGCG_C\n______________::|_||||||||_|\n______________UUG_UUACGCGC_G\n3'-UUU...UACUA___U________A_AAAG-5'\n_____________|______________|\n_____________19_____________4\n |
259 -- 265 |
7 -- 13 |
-14.4034 kcal/mol |
5.44099 kcal/mol |
1.2243 kcal/mol |
254 267@LB@ | |@LB@5'-AUU...UAAUG ACCGC...GCG-3'@LB@ GGC AAUGCGCG C@LB@ ::| |||||||| |@LB@ UUG UUACGCGC G@LB@3'-UUU...UACUA U A AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -7.74 kcal/mol@LB@Hybridization Energy -14.4034 kcal/mol@LB@Unfolding Energy - mRNA 5.44099 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 255 -- 266@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 7 -- 13@LB@ |
123 |
0.01235 |
0.3104 |
b0097 |
secM |
-7.65 |
0.286972 |
189 -- 203 |
7 -- 21 |
regulator of secA translation |
|
_____________188_____________204\n_____________|_______________|\n5'-UGG...AUCGG________UAA____AGUGG...CGC-3'\n______________GAUGGCAA___CGUG\n______________|||::|||___||:|\n______________CUAUUGUU___GCGC\n3'-UUU...UACUA________UAC____AGAAAG-5'\n_____________|_______________|\n_____________22______________6\n |
190 -- 196 |
14 -- 20 |
-12.5088 kcal/mol |
3.61266 kcal/mol |
1.24179 kcal/mol |
188 204@LB@ | |@LB@5'-UGG...AUCGG UAA AGUGG...CGC-3'@LB@ GAUGGCAA CGUG@LB@ |||::||| ||:|@LB@ CUAUUGUU GCGC@LB@3'-UUU...UACUA UAC AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -7.65 kcal/mol@LB@Hybridization Energy -12.5088 kcal/mol@LB@Unfolding Energy - mRNA 3.61266 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 189 -- 203@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 14 -- 20@LB@ |
83 |
0.007683 |
0.3104 |
b4244 |
pyrI |
-7.62 |
0.290375 |
210 -- 222 |
10 -- 21 |
aspartate carbamoyltransferase regulatory subunit |
|
_____________209___________223\n_____________|_____________|\n5'-UUC...CACAC__________U__AGGUU...UCA-3'\n______________GAUAAUAAAU_GC\n______________|||||:||||_||\n______________CUAUUGUUUA_CG\n3'-UUU...UACUA_____________CGCAG...AAG-5'\n_____________|_____________|\n_____________22____________9\n |
213 -- 219 |
12 -- 18 |
-11.1174 kcal/mol |
2.26673 kcal/mol |
1.23076 kcal/mol |
209 223@LB@ | |@LB@5'-UUC...CACAC U AGGUU...UCA-3'@LB@ GAUAAUAAAU GC@LB@ |||||:|||| ||@LB@ CUAUUGUUUA CG@LB@3'-UUU...UACUA CGCAG...AAG-5'@LB@ | |@LB@ 22 9@LB@@LB@@LB@Energy -7.62 kcal/mol@LB@Hybridization Energy -11.1174 kcal/mol@LB@Unfolding Energy - mRNA 2.26673 kcal/mol@LB@Unfolding Energy - sRNA 1.23076 kcal/mol@LB@@LB@Position - mRNA 210 -- 222@LB@Position - sRNA 10 -- 21@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 12 -- 18@LB@ |
188 |
0.0185 |
0.3104 |
b3364 |
tsgA |
-7.52 |
0.300608 |
282 -- 299 |
12 -- 29 |
putative transporter |
|
_____________281________________300\n_____________|__________________|\n5'-CCA...UCACC_____________G____A-3'\n______________GGGAUGGUGAUGG_AAAU\n______________||||||:||||::_||||\n______________CCCUACUACUAUU_UUUA\n3'-UUU...UAAGU_____________G____CGCGC...AAG-5'\n_____________|__________________|\n_____________30_________________11\n |
282 -- 288 |
23 -- 29 |
-23.3156 kcal/mol |
8.39977 kcal/mol |
7.39774 kcal/mol |
281 300@LB@ | |@LB@5'-CCA...UCACC G A-3'@LB@ GGGAUGGUGAUGG AAAU@LB@ ||||||:||||:: ||||@LB@ CCCUACUACUAUU UUUA@LB@3'-UUU...UAAGU G CGCGC...AAG-5'@LB@ | |@LB@ 30 11@LB@@LB@@LB@Energy -7.52 kcal/mol@LB@Hybridization Energy -23.3156 kcal/mol@LB@Unfolding Energy - mRNA 8.39977 kcal/mol@LB@Unfolding Energy - sRNA 7.39774 kcal/mol@LB@@LB@Position - mRNA 282 -- 299@LB@Position - sRNA 12 -- 29@LB@Position Seed - mRNA 282 -- 288@LB@Position Seed - sRNA 23 -- 29@LB@ |
143 |
0.01362 |
0.3104 |
b3284 |
smg |
-7.50 |
0.302399 |
64 -- 82 |
5 -- 21 |
DUF494 family putative periplasmic protein |
|
_____________63__________________83\n_____________|___________________|\n5'-UUC...GAUGA_______CC__U__A____GUCGC...CAG-3'\n______________GGUAACA__UG_UG_CGUC\n______________|:|||||__||_:|_||||\n______________CUAUUGU__AC_GC_GCAG\n3'-UUU...UACUA_______UU__________AAAG-5'\n_____________|___________________|\n_____________22__________________4\n |
64 -- 70 |
15 -- 21 |
-13.2614 kcal/mol |
4.51132 kcal/mol |
1.24955 kcal/mol |
63 83@LB@ | |@LB@5'-UUC...GAUGA CC U A GUCGC...CAG-3'@LB@ GGUAACA UG UG CGUC@LB@ |:||||| || :| ||||@LB@ CUAUUGU AC GC GCAG@LB@3'-UUU...UACUA UU AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -7.50 kcal/mol@LB@Hybridization Energy -13.2614 kcal/mol@LB@Unfolding Energy - mRNA 4.51132 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 64 -- 82@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 15 -- 21@LB@ |