47 |
0.003448 |
0.2484 |
b0614 |
citX |
-10.13 |
0.115098 |
76 -- 91 |
4 -- 17 |
apo-citrate lyase phosphoribosyl-dephospho-CoA transferase |
|
_____________75_______________92\n_____________|________________|\n5'-UUA...GCUGC____AC__________GCUGA...UCA-3'\n______________GCGA__GUGCGCGUCU\n______________:|:|__:|||||||||\n______________UGUU__UACGCGCAGA\n3'-UUU...ACUAU________________AAG-5'\n_____________|________________|\n_____________18_______________3\n |
85 -- 91 |
4 -- 10 |
-19.1919 kcal/mol |
7.83057 kcal/mol |
1.22888 kcal/mol |
75 92@LB@ | |@LB@5'-UUA...GCUGC AC GCUGA...UCA-3'@LB@ GCGA GUGCGCGUCU@LB@ :|:| :|||||||||@LB@ UGUU UACGCGCAGA@LB@3'-UUU...ACUAU AAG-5'@LB@ | |@LB@ 18 3@LB@@LB@@LB@Energy -10.13 kcal/mol@LB@Hybridization Energy -19.1919 kcal/mol@LB@Unfolding Energy - mRNA 7.83057 kcal/mol@LB@Unfolding Energy - sRNA 1.22888 kcal/mol@LB@@LB@Position - mRNA 76 -- 91@LB@Position - sRNA 4 -- 17@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 4 -- 10@LB@ |
111 |
0.01125 |
0.3104 |
b0102 |
zapD |
-10.07 |
0.117779 |
99 -- 113 |
8 -- 22 |
FtsZ stabilizer |
|
_____________98______________114\n_____________|_______________|\n5'-ACC...GUCAU_________CG____ACCGG...CCA-3'\n______________UGAUAAUAA__GCGC\n______________||||||:||__||||\n______________ACUAUUGUU__CGCG\n3'-UUU...CUACU_________UA____CAGAAAG-5'\n_____________|_______________|\n_____________23______________7\n |
101 -- 107 |
14 -- 20 |
-15.8633 kcal/mol |
4.55182 kcal/mol |
1.23838 kcal/mol |
98 114@LB@ | |@LB@5'-ACC...GUCAU CG ACCGG...CCA-3'@LB@ UGAUAAUAA GCGC@LB@ ||||||:|| ||||@LB@ ACUAUUGUU CGCG@LB@3'-UUU...CUACU UA CAGAAAG-5'@LB@ | |@LB@ 23 7@LB@@LB@@LB@Energy -10.07 kcal/mol@LB@Hybridization Energy -15.8633 kcal/mol@LB@Unfolding Energy - mRNA 4.55182 kcal/mol@LB@Unfolding Energy - sRNA 1.23838 kcal/mol@LB@@LB@Position - mRNA 99 -- 113@LB@Position - sRNA 8 -- 22@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 14 -- 20@LB@ |
158 |
0.01496 |
0.3104 |
b4278 |
insG |
-10.00 |
0.121023 |
32 -- 48 |
3 -- 20 |
IS4 transposase |
|
_____________31_________________49\n_____________|__________________|\n5'-GUU...UCCAC________A_________GUUAC...CUC-3'\n______________AUAACAAA__CGCGUUUU\n______________||||||||__|||||:||\n______________UAUUGUUU__GCGCAGAA\n3'-UUU...ACUAC________AC________AG-5'\n_____________|__________________|\n_____________21_________________2\n |
42 -- 48 |
3 -- 9 |
-15.3953 kcal/mol |
4.13684 kcal/mol |
1.25547 kcal/mol |
31 49@LB@ | |@LB@5'-GUU...UCCAC A GUUAC...CUC-3'@LB@ AUAACAAA CGCGUUUU@LB@ |||||||| |||||:||@LB@ UAUUGUUU GCGCAGAA@LB@3'-UUU...ACUAC AC AG-5'@LB@ | |@LB@ 21 2@LB@@LB@@LB@Energy -10.00 kcal/mol@LB@Hybridization Energy -15.3953 kcal/mol@LB@Unfolding Energy - mRNA 4.13684 kcal/mol@LB@Unfolding Energy - sRNA 1.25547 kcal/mol@LB@@LB@Position - mRNA 32 -- 48@LB@Position - sRNA 3 -- 20@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 3 -- 9@LB@ |
51 |
0.004574 |
0.3024 |
b3529 |
yhjK |
-9.99 |
0.121635 |
195 -- 213 |
1 -- 18 |
cyclic-di-GMP phosphodiesterase |
|
_____________194_________________214\n_____________|___________________|\n5'-AGC...GGGGA_____UU_______AAG__GCUCG...AUC-3'\n______________GACAA__UGCGCGU___UC\n______________:||||__|||||||___||\n______________UUGUU__ACGCGCA___AG\n3'-UUU...UACUA_____U________GAA__-5'\n_____________|__________________|\n_____________19_________________1\n |
202 -- 208 |
6 -- 12 |
-16.8324 kcal/mol |
5.6017 kcal/mol |
1.24077 kcal/mol |
194 214@LB@ | |@LB@5'-AGC...GGGGA UU AAG GCUCG...AUC-3'@LB@ GACAA UGCGCGU UC@LB@ :|||| ||||||| ||@LB@ UUGUU ACGCGCA AG@LB@3'-UUU...UACUA U GAA -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -9.99 kcal/mol@LB@Hybridization Energy -16.8324 kcal/mol@LB@Unfolding Energy - mRNA 5.6017 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 195 -- 213@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 6 -- 12@LB@ |
44 |
0.003062 |
0.2325 |
b3847 |
pepQ |
-9.98 |
0.122201 |
144 -- 157 |
8 -- 21 |
proline dipeptidase |
|
_____________143____________158\n_____________|______________|\n5'-UUG...CUCUG_____AC_______UAAGA...UUC-3'\n______________GAUGA__GAUGUGC\n______________|||:|__:|||:||\n______________CUAUU__UUACGCG\n3'-UUU...UACUA_____GU_______CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
151 -- 157 |
8 -- 14 |
-13.3112 kcal/mol |
2.09686 kcal/mol |
1.23638 kcal/mol |
143 158@LB@ | |@LB@5'-UUG...CUCUG AC UAAGA...UUC-3'@LB@ GAUGA GAUGUGC@LB@ |||:| :|||:||@LB@ CUAUU UUACGCG@LB@3'-UUU...UACUA GU CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -9.98 kcal/mol@LB@Hybridization Energy -13.3112 kcal/mol@LB@Unfolding Energy - mRNA 2.09686 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 144 -- 157@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 8 -- 14@LB@ |
70 |
0.006501 |
0.3087 |
b3301 |
rplO |
-9.96 |
0.122936 |
194 -- 206 |
8 -- 20 |
50S ribosomal subunit protein L15 |
|
_____________193___________207\n_____________|_____________|\n5'-UUC...GAGGA____G________UUAAA...GUG-3'\n______________GUAA_AGAUGCGU\n______________:|||_|:|||||:\n______________UAUU_UUUACGCG\n3'-UUU...ACUAC____G________CAGAAAG-5'\n_____________|_____________|\n_____________21____________7\n |
200 -- 206 |
8 -- 14 |
-13.6668 kcal/mol |
2.47062 kcal/mol |
1.23367 kcal/mol |
193 207@LB@ | |@LB@5'-UUC...GAGGA G UUAAA...GUG-3'@LB@ GUAA AGAUGCGU@LB@ :||| |:|||||:@LB@ UAUU UUUACGCG@LB@3'-UUU...ACUAC G CAGAAAG-5'@LB@ | |@LB@ 21 7@LB@@LB@@LB@Energy -9.96 kcal/mol@LB@Hybridization Energy -13.6668 kcal/mol@LB@Unfolding Energy - mRNA 2.47062 kcal/mol@LB@Unfolding Energy - sRNA 1.23367 kcal/mol@LB@@LB@Position - mRNA 194 -- 206@LB@Position - sRNA 8 -- 20@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 8 -- 14@LB@ |
196 |
0.01921 |
0.3104 |
b2167 |
fruA |
-9.92 |
0.125082 |
150 -- 163 |
5 -- 22 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________149________________164\n_____________|__________________|\n5'-CGC...CGCAA__________________GACUU...AAA-3'\n______________UGAUGGC____GCGCGUC\n______________||||::|____|||||||\n______________ACUAUUG____CGCGCAG\n3'-UUU...CUACU_______UUUA_______AAAG-5'\n_____________|__________________|\n_____________23_________________4\n |
157 -- 163 |
5 -- 11 |
-18.2874 kcal/mol |
7.11819 kcal/mol |
1.25155 kcal/mol |
149 164@LB@ | |@LB@5'-CGC...CGCAA GACUU...AAA-3'@LB@ UGAUGGC GCGCGUC@LB@ ||||::| |||||||@LB@ ACUAUUG CGCGCAG@LB@3'-UUU...CUACU UUUA AAAG-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -18.2874 kcal/mol@LB@Unfolding Energy - mRNA 7.11819 kcal/mol@LB@Unfolding Energy - sRNA 1.25155 kcal/mol@LB@@LB@Position - mRNA 150 -- 163@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 5 -- 11@LB@ |
169 |
0.01667 |
0.3104 |
b3575 |
yiaK |
-9.90 |
0.125874 |
198 -- 219 |
8 -- 29 |
2 3-diketo-L-gulonate reductase NADH-dependent |
|
_____________197____________________220\n_____________|______________________|\n5'-UUU...AGCCU_______AA______UU__A__AGUUA...UCG-3'\n______________GGGAUGA__GUGACA__UG_GC\n______________|||||||__:|:|||__||_||\n______________CCCUACU__UAUUGU__AC_CG\n3'-UUU...UAAGU_______AC______UU__G__CAGAAAG-5'\n_____________|______________________|\n_____________30_____________________7\n |
198 -- 204 |
23 -- 29 |
-23.0827 kcal/mol |
5.7681 kcal/mol |
7.41331 kcal/mol |
197 220@LB@ | |@LB@5'-UUU...AGCCU AA UU A AGUUA...UCG-3'@LB@ GGGAUGA GUGACA UG GC@LB@ ||||||| :|:||| || ||@LB@ CCCUACU UAUUGU AC CG@LB@3'-UUU...UAAGU AC UU G CAGAAAG-5'@LB@ | |@LB@ 30 7@LB@@LB@@LB@Energy -9.90 kcal/mol@LB@Hybridization Energy -23.0827 kcal/mol@LB@Unfolding Energy - mRNA 5.7681 kcal/mol@LB@Unfolding Energy - sRNA 7.41331 kcal/mol@LB@@LB@Position - mRNA 198 -- 219@LB@Position - sRNA 8 -- 29@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 23 -- 29@LB@ |
176 |
0.01748 |
0.3104 |
b0435 |
bolA |
-9.78 |
0.131850 |
202 -- 220 |
4 -- 22 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________201_________________221\n_____________|___________________|\n5'-UGA...UUUCA________C___A___GA_AGAAG...CCG-3'\n______________UGAUGAUA_GUG_GCG__U\n______________||||:|:|_:||_|||__|\n______________ACUAUUGU_UAC_CGC__A\n3'-UUU...CUACU________U___G___AG_AAG-5'\n_____________|___________________|\n_____________23__________________3\n |
203 -- 209 |
15 -- 21 |
-14.8727 kcal/mol |
3.8346 kcal/mol |
1.2572 kcal/mol |
201 221@LB@ | |@LB@5'-UGA...UUUCA C A GA AGAAG...CCG-3'@LB@ UGAUGAUA GUG GCG U@LB@ ||||:|:| :|| ||| |@LB@ ACUAUUGU UAC CGC A@LB@3'-UUU...CUACU U G AG AAG-5'@LB@ | |@LB@ 23 3@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -14.8727 kcal/mol@LB@Unfolding Energy - mRNA 3.8346 kcal/mol@LB@Unfolding Energy - sRNA 1.2572 kcal/mol@LB@@LB@Position - mRNA 202 -- 220@LB@Position - sRNA 4 -- 22@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 15 -- 21@LB@ |
84 |
0.008129 |
0.3104 |
b2579 |
grcA |
-9.71 |
0.135356 |
279 -- 291 |
5 -- 18 |
autonomous glycyl radical cofactor |
|
_____________278____________292\n_____________|______________|\n5'-UUG...AAAAA______________GCAUC...UUG-3'\n______________GGCGAA_GCGCGUU\n______________::|:||_||||||:\n______________UUGUUU_CGCGCAG\n3'-UUU...UACUA______A_______AAAG-5'\n_____________|______________|\n_____________19_____________4\n |
285 -- 291 |
5 -- 11 |
-16.0784 kcal/mol |
5.14159 kcal/mol |
1.2243 kcal/mol |
278 292@LB@ | |@LB@5'-UUG...AAAAA GCAUC...UUG-3'@LB@ GGCGAA GCGCGUU@LB@ ::|:|| ||||||:@LB@ UUGUUU CGCGCAG@LB@3'-UUU...UACUA A AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -9.71 kcal/mol@LB@Hybridization Energy -16.0784 kcal/mol@LB@Unfolding Energy - mRNA 5.14159 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 279 -- 291@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 5 -- 11@LB@ |