170 |
0.01004 |
0.2071 |
b3887 |
dtd |
-7.24 |
0.420466 |
57 -- 66 |
52 -- 62 |
D-tyr-tRNA(Tyr) deacylase |
|
_____________56__________67\n_____________|___________|\n5'-GGA...AUUUA___________GCGGU...UCG-3'\n______________UGG_UGUGCUG\n______________|||_||:||:|\n______________ACC_ACGCGGC\n3'-UUU...UUAGA___G_______AUUUA...GUG-5'\n_____________|___________|\n_____________63__________51\n |
60 -- 66 |
52 -- 58 |
-13.8062 kcal/mol |
1.68508 kcal/mol |
4.8804 kcal/mol |
56 67@LB@ | |@LB@5'-GGA...AUUUA GCGGU...UCG-3'@LB@ UGG UGUGCUG@LB@ ||| ||:||:|@LB@ ACC ACGCGGC@LB@3'-UUU...UUAGA G AUUUA...GUG-5'@LB@ | |@LB@ 63 51@LB@@LB@@LB@Energy -7.24 kcal/mol@LB@Hybridization Energy -13.8062 kcal/mol@LB@Unfolding Energy - mRNA 1.68508 kcal/mol@LB@Unfolding Energy - sRNA 4.8804 kcal/mol@LB@@LB@Position - mRNA 57 -- 66@LB@Position - sRNA 52 -- 62@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 52 -- 58@LB@ |
171 |
0.01011 |
0.2071 |
b4086 |
alsC |
-10.38 |
0.118114 |
189 -- 207 |
53 -- 70 |
D-allose ABC transporter permease |
|
_____________188_________________208\n_____________|___________________|\n5'-CGC...GAAGA_______A____A__G___UUACC...CGA-3'\n______________GGAGAUU_UGGC_UG_GCU\n______________|||:||:_||||_||_||:\n______________CCUUUAG_ACCG_AC_CGG\n3'-UUU...UGGUC_______A_______G___CAUUU...GUG-5'\n_____________|___________________|\n_____________71__________________52\n |
189 -- 195 |
64 -- 70 |
-21.9341 kcal/mol |
4.72392 kcal/mol |
6.83419 kcal/mol |
188 208@LB@ | |@LB@5'-CGC...GAAGA A A G UUACC...CGA-3'@LB@ GGAGAUU UGGC UG GCU@LB@ |||:||: |||| || ||:@LB@ CCUUUAG ACCG AC CGG@LB@3'-UUU...UGGUC A G CAUUU...GUG-5'@LB@ | |@LB@ 71 52@LB@@LB@@LB@Energy -10.38 kcal/mol@LB@Hybridization Energy -21.9341 kcal/mol@LB@Unfolding Energy - mRNA 4.72392 kcal/mol@LB@Unfolding Energy - sRNA 6.83419 kcal/mol@LB@@LB@Position - mRNA 189 -- 207@LB@Position - sRNA 53 -- 70@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 64 -- 70@LB@ |
172 |
0.0102 |
0.2071 |
b1383 |
ydbL |
-9.96 |
0.141752 |
21 -- 31 |
52 -- 62 |
DUF1318 family protein |
|
_____________20__________32\n_____________|___________|\n5'-AAA...UUUAC___________ACGUC...UAG-3'\n______________UGGCUGCGUUG\n______________||||||||::|\n______________ACCGACGCGGC\n3'-UUU...UUAGA___________AUUUA...GUG-5'\n_____________|___________|\n_____________63__________51\n |
25 -- 31 |
52 -- 58 |
-19.6889 kcal/mol |
4.85225 kcal/mol |
4.8804 kcal/mol |
20 32@LB@ | |@LB@5'-AAA...UUUAC ACGUC...UAG-3'@LB@ UGGCUGCGUUG@LB@ ||||||||::|@LB@ ACCGACGCGGC@LB@3'-UUU...UUAGA AUUUA...GUG-5'@LB@ | |@LB@ 63 51@LB@@LB@@LB@Energy -9.96 kcal/mol@LB@Hybridization Energy -19.6889 kcal/mol@LB@Unfolding Energy - mRNA 4.85225 kcal/mol@LB@Unfolding Energy - sRNA 4.8804 kcal/mol@LB@@LB@Position - mRNA 21 -- 31@LB@Position - sRNA 52 -- 62@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 52 -- 58@LB@ |
173 |
0.01023 |
0.2071 |
b3297 |
rpsK |
-11.54 |
0.070538 |
32 -- 43 |
48 -- 59 |
30S ribosomal subunit protein S11 |
|
_____________31___________44\n_____________|____________|\n5'-CGA...GUGAU____________AUCAG...CUA-3'\n______________CUGCGCCGUGAA\n______________|||||||||:||\n______________GACGCGGCAUUU\n3'-UUU...GAACC____________AAUAA...GUG-5'\n_____________|____________|\n_____________60___________47\n |
37 -- 43 |
48 -- 54 |
-20.6796 kcal/mol |
2.9935 kcal/mol |
6.14631 kcal/mol |
31 44@LB@ | |@LB@5'-CGA...GUGAU AUCAG...CUA-3'@LB@ CUGCGCCGUGAA@LB@ |||||||||:||@LB@ GACGCGGCAUUU@LB@3'-UUU...GAACC AAUAA...GUG-5'@LB@ | |@LB@ 60 47@LB@@LB@@LB@Energy -11.54 kcal/mol@LB@Hybridization Energy -20.6796 kcal/mol@LB@Unfolding Energy - mRNA 2.9935 kcal/mol@LB@Unfolding Energy - sRNA 6.14631 kcal/mol@LB@@LB@Position - mRNA 32 -- 43@LB@Position - sRNA 48 -- 59@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 48 -- 54@LB@ |
174 |
0.01024 |
0.2071 |
b0889 |
lrp |
-11.01 |
0.089440 |
79 -- 112 |
38 -- 78 |
leucine-responsive global transcriptional regulator |
|
_____________78________________________________________113\n_____________|_________________________________________|\n5'-GUG...CCGUA_________C______________________CU_C_____UUCGG...AGC-3'\n______________GAC_CCAGG___AUU___GC_GCGCCGUGAAU__U_AUGAU\n______________:||_|||||___||:___||_|||||||:|||__|_|||||\n______________UUG_GGUCC___UAG___CG_CGCGGCAUUUA__A_UACUA\n3'-UUU...CGCGG___U_____CUU___AAC__A___________AU_A_____CUCAA...GUG-5'\n_____________|_________________________________________|\n_____________79________________________________________37\n |
96 -- 102 |
48 -- 54 |
-32.0055 kcal/mol |
11.6338 kcal/mol |
9.36467 kcal/mol |
78 113@LB@ | |@LB@5'-GUG...CCGUA C CU C UUCGG...AGC-3'@LB@ GAC CCAGG AUU GC GCGCCGUGAAU U AUGAU@LB@ :|| ||||| ||: || |||||||:||| | |||||@LB@ UUG GGUCC UAG CG CGCGGCAUUUA A UACUA@LB@3'-UUU...CGCGG U CUU AAC A AU A CUCAA...GUG-5'@LB@ | |@LB@ 79 37@LB@@LB@@LB@Energy -11.01 kcal/mol@LB@Hybridization Energy -32.0055 kcal/mol@LB@Unfolding Energy - mRNA 11.6338 kcal/mol@LB@Unfolding Energy - sRNA 9.36467 kcal/mol@LB@@LB@Position - mRNA 79 -- 112@LB@Position - sRNA 38 -- 78@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 48 -- 54@LB@ |
175 |
0.01031 |
0.2074 |
b1834 |
yebT |
-10.32 |
0.121003 |
270 -- 282 |
51 -- 62 |
MCE domain protein |
|
_____________269___________283\n_____________|_____________|\n5'-UCU...CUUUC_______U_____UCAUC...UUG-3'\n______________UGGCUGC_GCCGU\n______________|||||||_|||||\n______________ACCGACG_CGGCA\n3'-UUU...UUAGA_____________UUUAA...GUG-5'\n_____________|_____________|\n_____________63____________50\n |
270 -- 276 |
56 -- 62 |
-21.4836 kcal/mol |
6.28034 kcal/mol |
4.8826 kcal/mol |
269 283@LB@ | |@LB@5'-UCU...CUUUC U UCAUC...UUG-3'@LB@ UGGCUGC GCCGU@LB@ ||||||| |||||@LB@ ACCGACG CGGCA@LB@3'-UUU...UUAGA UUUAA...GUG-5'@LB@ | |@LB@ 63 50@LB@@LB@@LB@Energy -10.32 kcal/mol@LB@Hybridization Energy -21.4836 kcal/mol@LB@Unfolding Energy - mRNA 6.28034 kcal/mol@LB@Unfolding Energy - sRNA 4.8826 kcal/mol@LB@@LB@Position - mRNA 270 -- 282@LB@Position - sRNA 51 -- 62@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 56 -- 62@LB@ |
176 |
0.01044 |
0.208 |
b0933 |
ssuB |
-9.69 |
0.158756 |
203 -- 226 |
69 -- 90 |
aliphatic sulfonate ABC transporter ATPase |
|
_____________202______________________227\n_____________|________________________|\n5'-AUU...GGUAU_________UC___UGA_______CACGC...AUA-3'\n______________GAAUACUGC__GUC___ACCAGGG\n______________|||||||||__|:|___|||||||\n______________CUUAUGACG__CGG___UGGUCCC\n3'-UUU...ACGCG______________UUG_______UUUAG...GUG-5'\n_____________|________________________|\n_____________91_______________________68\n |
220 -- 226 |
69 -- 75 |
-28.101 kcal/mol |
8.24441 kcal/mol |
10.1628 kcal/mol |
202 227@LB@ | |@LB@5'-AUU...GGUAU UC UGA CACGC...AUA-3'@LB@ GAAUACUGC GUC ACCAGGG@LB@ ||||||||| |:| |||||||@LB@ CUUAUGACG CGG UGGUCCC@LB@3'-UUU...ACGCG UUG UUUAG...GUG-5'@LB@ | |@LB@ 91 68@LB@@LB@@LB@Energy -9.69 kcal/mol@LB@Hybridization Energy -28.101 kcal/mol@LB@Unfolding Energy - mRNA 8.24441 kcal/mol@LB@Unfolding Energy - sRNA 10.1628 kcal/mol@LB@@LB@Position - mRNA 203 -- 226@LB@Position - sRNA 69 -- 90@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 69 -- 75@LB@ |
177 |
0.01048 |
0.208 |
b2416 |
ptsI |
-10.21 |
0.127224 |
180 -- 212 |
6 -- 36 |
PEP-protein phosphotransferase of PTS system (enzyme I) |
|
_____________179________________________________213\n_____________|__________________________________|\n5'-GUG...AAAUC___C_____UAA____G___UA__A_________AUUUU...CCG-3'\n______________AGU_ACAAG___GGUA_GGU__UG__UUUCAGGC\n______________|||_|||||___||:|_:|:__||__||||||||\n______________UCA_UGUUC___CCGU_UCG__AC__AAAGUCCG\n3'-UUU...ACUAC___A____________G___UG__AA________GCGUG-5'\n_____________|__________________________________|\n_____________37_________________________________5\n |
206 -- 212 |
6 -- 12 |
-27.3223 kcal/mol |
5.11839 kcal/mol |
11.9979 kcal/mol |
179 213@LB@ | |@LB@5'-GUG...AAAUC C UAA G UA A AUUUU...CCG-3'@LB@ AGU ACAAG GGUA GGU UG UUUCAGGC@LB@ ||| ||||| ||:| :|: || ||||||||@LB@ UCA UGUUC CCGU UCG AC AAAGUCCG@LB@3'-UUU...ACUAC A G UG AA GCGUG-5'@LB@ | |@LB@ 37 5@LB@@LB@@LB@Energy -10.21 kcal/mol@LB@Hybridization Energy -27.3223 kcal/mol@LB@Unfolding Energy - mRNA 5.11839 kcal/mol@LB@Unfolding Energy - sRNA 11.9979 kcal/mol@LB@@LB@Position - mRNA 180 -- 212@LB@Position - sRNA 6 -- 36@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 6 -- 12@LB@ |
178 |
0.01053 |
0.208 |
b3582 |
sgbU |
-5.91 |
0.640260 |
169 -- 196 |
65 -- 84 |
putative L-xylulose 5-phosphate 3-epimerase |
|
_____________168__________________________197\n_____________|____________________________|\n5'-UCU...UUCCA_____AAAU_______AUCU________GCGCG...UUG-3'\n______________UGCGC____CGACGCU____GGGGAGGU\n______________|||||____|:||:|:____:||||::|\n______________ACGCG____GUUGUGG____UCCCUUUA\n3'-UUU...UUAUG____________________________GAACC...GUG-5'\n_____________|____________________________|\n_____________85___________________________64\n |
190 -- 196 |
65 -- 71 |
-23.9168 kcal/mol |
10.6467 kcal/mol |
7.36194 kcal/mol |
168 197@LB@ | |@LB@5'-UCU...UUCCA AAAU AUCU GCGCG...UUG-3'@LB@ UGCGC CGACGCU GGGGAGGU@LB@ ||||| |:||:|: :||||::|@LB@ ACGCG GUUGUGG UCCCUUUA@LB@3'-UUU...UUAUG GAACC...GUG-5'@LB@ | |@LB@ 85 64@LB@@LB@@LB@Energy -5.91 kcal/mol@LB@Hybridization Energy -23.9168 kcal/mol@LB@Unfolding Energy - mRNA 10.6467 kcal/mol@LB@Unfolding Energy - sRNA 7.36194 kcal/mol@LB@@LB@Position - mRNA 169 -- 196@LB@Position - sRNA 65 -- 84@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 65 -- 71@LB@ |
179 |
0.01058 |
0.208 |
b1325 |
ycjG |
-11.81 |
0.062523 |
258 -- 297 |
32 -- 77 |
L-Ala-D/L-Glu epimerase |
|
_____________257_______________________________________________298\n_____________|_________________________________________________|\n5'-AAG...UGAUU______________GCA__GAA____G______________________AAC-3'\n______________GC_CCGGGGAAGUC___GU___GCGC_CGUG_______GUGGUG_GUUG\n______________:|_||:|||||:||___|:___||||_|||:_______:||:||_|||:\n______________UG_GGUCCCUUUAG___CG___CGCG_GCAU_______UACUAC_CAAU\n3'-UUU...GCGGU__U___________AAC__A___________UUAAUAA______U____GUUCC...GUG-5'\n_____________|_________________________________________________|\n_____________78________________________________________________31\n |
264 -- 270 |
64 -- 70 |
-38.4326 kcal/mol |
17.2613 kcal/mol |
9.36253 kcal/mol |
257 298@LB@ | |@LB@5'-AAG...UGAUU GCA GAA G AAC-3'@LB@ GC CCGGGGAAGUC GU GCGC CGUG GUGGUG GUUG@LB@ :| ||:|||||:|| |: |||| |||: :||:|| |||:@LB@ UG GGUCCCUUUAG CG CGCG GCAU UACUAC CAAU@LB@3'-UUU...GCGGU U AAC A UUAAUAA U GUUCC...GUG-5'@LB@ | |@LB@ 78 31@LB@@LB@@LB@Energy -11.81 kcal/mol@LB@Hybridization Energy -38.4326 kcal/mol@LB@Unfolding Energy - mRNA 17.2613 kcal/mol@LB@Unfolding Energy - sRNA 9.36253 kcal/mol@LB@@LB@Position - mRNA 258 -- 297@LB@Position - sRNA 32 -- 77@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 64 -- 70@LB@ |