92 |
0.004911 |
0.1855 |
b3732 |
atpD |
-9.01 |
0.211333 |
117 -- 128 |
1 -- 11 |
F1 sector of membrane-bound ATP synthase beta subunit |
|
_____________116__________129\n_____________|____________|\n5'-GGC...GCUCG_______A____UACUC...AAA-3'\n______________UCAGGCC_GCAU\n______________|||||||_|||:\n______________AGUCCGG_CGUG\n3'-UUU...CAAAA____________-5'\n_____________|___________|\n_____________12__________1\n |
117 -- 123 |
5 -- 11 |
-17.8068 kcal/mol |
3.15312 kcal/mol |
5.60325 kcal/mol |
116 129@LB@ | |@LB@5'-GGC...GCUCG A UACUC...AAA-3'@LB@ UCAGGCC GCAU@LB@ ||||||| |||:@LB@ AGUCCGG CGUG@LB@3'-UUU...CAAAA -5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -17.8068 kcal/mol@LB@Unfolding Energy - mRNA 3.15312 kcal/mol@LB@Unfolding Energy - sRNA 5.60325 kcal/mol@LB@@LB@Position - mRNA 117 -- 128@LB@Position - sRNA 1 -- 11@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 5 -- 11@LB@ |
93 |
0.005014 |
0.1855 |
b0091 |
murC |
-15.25 |
0.013117 |
8 -- 30 |
73 -- 94 |
UDP-N-acetylmuramate:L-alanine ligase |
|
_____________7_______________________31\n_____________|_______________________|\n____5'-CAGCUUA____________U__________CUGGC...GCG-3'\n______________GCGUGGAUGCUG_CGCCAACACC\n______________|||:|:||:|||_||||||||||\n______________CGCGCUUAUGAC_GCGGUUGUGG\n3'-UUU...CCCCA_______________________UCCCU...GUG-5'\n_____________|_______________________|\n_____________95______________________72\n |
24 -- 30 |
73 -- 79 |
-39.1057 kcal/mol |
11.3 kcal/mol |
12.5321 kcal/mol |
7 31@LB@ | |@LB@ 5'-CAGCUUA U CUGGC...GCG-3'@LB@ GCGUGGAUGCUG CGCCAACACC@LB@ |||:|:||:||| ||||||||||@LB@ CGCGCUUAUGAC GCGGUUGUGG@LB@3'-UUU...CCCCA UCCCU...GUG-5'@LB@ | |@LB@ 95 72@LB@@LB@@LB@Energy -15.25 kcal/mol@LB@Hybridization Energy -39.1057 kcal/mol@LB@Unfolding Energy - mRNA 11.3 kcal/mol@LB@Unfolding Energy - sRNA 12.5321 kcal/mol@LB@@LB@Position - mRNA 8 -- 30@LB@Position - sRNA 73 -- 94@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 73 -- 79@LB@ |
94 |
0.005015 |
0.1855 |
b2703 |
srlE |
-7.35 |
0.404948 |
254 -- 271 |
70 -- 86 |
glucitol/sorbitol-specific enzyme IIB component of PTS |
|
_____________253_________________272\n_____________|___________________|\n5'-GAA...CUUGA____AAA____________AAAAA...GUA-3'\n______________GCUG___GCC_ACGCCGGG\n______________:|||___|||_||:||:||\n______________UGAC___CGG_UGUGGUCC\n3'-UUU...GCUUA____G_____U________CUUUA...GUG-5'\n_____________|___________________|\n_____________87__________________69\n |
265 -- 271 |
70 -- 76 |
-23.089 kcal/mol |
8.46506 kcal/mol |
7.27772 kcal/mol |
253 272@LB@ | |@LB@5'-GAA...CUUGA AAA AAAAA...GUA-3'@LB@ GCUG GCC ACGCCGGG@LB@ :||| ||| ||:||:||@LB@ UGAC CGG UGUGGUCC@LB@3'-UUU...GCUUA G U CUUUA...GUG-5'@LB@ | |@LB@ 87 69@LB@@LB@@LB@Energy -7.35 kcal/mol@LB@Hybridization Energy -23.089 kcal/mol@LB@Unfolding Energy - mRNA 8.46506 kcal/mol@LB@Unfolding Energy - sRNA 7.27772 kcal/mol@LB@@LB@Position - mRNA 254 -- 271@LB@Position - sRNA 70 -- 86@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 70 -- 76@LB@ |
95 |
0.005084 |
0.1855 |
b3182 |
dacB |
-12.18 |
0.052827 |
253 -- 263 |
2 -- 12 |
D-alanyl-D-alanine carboxypeptidase |
|
_____________252_________264\n_____________|___________|\n5'-CCG...CAGUG___________AAUGU...GUG-3'\n______________UUCAGGCCGCA\n______________|||||||||||\n______________AAGUCCGGCGU\n3'-UUU...ACAAA___________G-5'\n_____________|___________|\n_____________13__________1\n |
257 -- 263 |
2 -- 8 |
-21.5619 kcal/mol |
3.68722 kcal/mol |
5.66926 kcal/mol |
252 264@LB@ | |@LB@5'-CCG...CAGUG AAUGU...GUG-3'@LB@ UUCAGGCCGCA@LB@ |||||||||||@LB@ AAGUCCGGCGU@LB@3'-UUU...ACAAA G-5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -12.18 kcal/mol@LB@Hybridization Energy -21.5619 kcal/mol@LB@Unfolding Energy - mRNA 3.68722 kcal/mol@LB@Unfolding Energy - sRNA 5.66926 kcal/mol@LB@@LB@Position - mRNA 253 -- 263@LB@Position - sRNA 2 -- 12@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 2 -- 8@LB@ |
96 |
0.005105 |
0.1855 |
b0870 |
ltaE |
-12.99 |
0.036706 |
93 -- 116 |
68 -- 88 |
L-allo-threonine aldolase PLP-dependent |
|
_____________92_______________________117\n_____________|________________________|\n5'-GUC...UGUAU_________G___U______C___CGCGG...ACC-3'\n______________AUGCUGCGC_CAA_CAUCAG_GGA\n______________||:||||||_|||_||:|||_|||\n______________UAUGACGCG_GUU_GUGGUC_CCU\n3'-UUU...GCGCU________________________UUAGA...GUG-5'\n_____________|________________________|\n_____________89_______________________67\n |
95 -- 101 |
80 -- 86 |
-29.0922 kcal/mol |
8.72289 kcal/mol |
7.38144 kcal/mol |
92 117@LB@ | |@LB@5'-GUC...UGUAU G U C CGCGG...ACC-3'@LB@ AUGCUGCGC CAA CAUCAG GGA@LB@ ||:|||||| ||| ||:||| |||@LB@ UAUGACGCG GUU GUGGUC CCU@LB@3'-UUU...GCGCU UUAGA...GUG-5'@LB@ | |@LB@ 89 67@LB@@LB@@LB@Energy -12.99 kcal/mol@LB@Hybridization Energy -29.0922 kcal/mol@LB@Unfolding Energy - mRNA 8.72289 kcal/mol@LB@Unfolding Energy - sRNA 7.38144 kcal/mol@LB@@LB@Position - mRNA 93 -- 116@LB@Position - sRNA 68 -- 88@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 80 -- 86@LB@ |
98 |
0.005208 |
0.1855 |
b4174 |
hflK |
-10.42 |
0.116019 |
265 -- 284 |
65 -- 83 |
modulator for HflB protease specific for phage lambda cII repressor |
|
_____________264__________________285\n_____________|____________________|\n5'-AGA...ACCUG___G____U__G________GGAAA...GUC-3'\n______________GCG_CAAC_CU_AGGGAAAU\n______________|||_||||_|:_||||||||\n______________CGC_GUUG_GG_UCCCUUUA\n3'-UUU...UAUGA___G____U___________GAACC...GUG-5'\n_____________|____________________|\n_____________84___________________64\n |
278 -- 284 |
65 -- 71 |
-24.0318 kcal/mol |
6.25533 kcal/mol |
7.35968 kcal/mol |
264 285@LB@ | |@LB@5'-AGA...ACCUG G U G GGAAA...GUC-3'@LB@ GCG CAAC CU AGGGAAAU@LB@ ||| |||| |: ||||||||@LB@ CGC GUUG GG UCCCUUUA@LB@3'-UUU...UAUGA G U GAACC...GUG-5'@LB@ | |@LB@ 84 64@LB@@LB@@LB@Energy -10.42 kcal/mol@LB@Hybridization Energy -24.0318 kcal/mol@LB@Unfolding Energy - mRNA 6.25533 kcal/mol@LB@Unfolding Energy - sRNA 7.35968 kcal/mol@LB@@LB@Position - mRNA 265 -- 284@LB@Position - sRNA 65 -- 83@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 65 -- 71@LB@ |
99 |
0.005465 |
0.1855 |
b0767 |
pgl |
-9.37 |
0.182441 |
275 -- 291 |
70 -- 86 |
6-phosphogluconolactonase |
|
_____________274________________292\n_____________|__________________|\n5'-UCA...GGCGC____A_____________UUGUC...AUG-3'\n______________ACUG_CGCUGACA_CAGG\n______________||||_|||::|||_||||\n______________UGAC_GCGGUUGU_GUCC\n3'-UUU...GCUUA_____________G____CUUUA...GUG-5'\n_____________|__________________|\n_____________87_________________69\n |
281 -- 287 |
75 -- 81 |
-21.4952 kcal/mol |
4.85205 kcal/mol |
7.27772 kcal/mol |
274 292@LB@ | |@LB@5'-UCA...GGCGC A UUGUC...AUG-3'@LB@ ACUG CGCUGACA CAGG@LB@ |||| |||::||| ||||@LB@ UGAC GCGGUUGU GUCC@LB@3'-UUU...GCUUA G CUUUA...GUG-5'@LB@ | |@LB@ 87 69@LB@@LB@@LB@Energy -9.37 kcal/mol@LB@Hybridization Energy -21.4952 kcal/mol@LB@Unfolding Energy - mRNA 4.85205 kcal/mol@LB@Unfolding Energy - sRNA 7.27772 kcal/mol@LB@@LB@Position - mRNA 275 -- 291@LB@Position - sRNA 70 -- 86@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 75 -- 81@LB@ |
100 |
0.00547 |
0.1855 |
b2451 |
eutA |
-10.77 |
0.099200 |
8 -- 32 |
56 -- 86 |
reactivating factor for ethanolamine ammonia lyase |
|
_____________7_______________________________33\n_____________|_______________________________|\n____5'-GUCAUCA________UU______________CC_____UUUCG...UGU-3'\n______________ACUGCGCC__CGCC______GUUU__GCUGC\n______________||||||||__|:||______:|:|__|||||\n______________UGACGCGG__GUGG______UAGA__CGACG\n3'-UUU...GCUUA________UU____UCCCUU____AC_____CGGCA...GUG-5'\n_____________|_______________________________|\n_____________87______________________________55\n |
9 -- 15 |
79 -- 85 |
-30.9169 kcal/mol |
5.09004 kcal/mol |
15.0537 kcal/mol |
7 33@LB@ | |@LB@ 5'-GUCAUCA UU CC UUUCG...UGU-3'@LB@ ACUGCGCC CGCC GUUU GCUGC@LB@ |||||||| |:|| :|:| |||||@LB@ UGACGCGG GUGG UAGA CGACG@LB@3'-UUU...GCUUA UU UCCCUU AC CGGCA...GUG-5'@LB@ | |@LB@ 87 55@LB@@LB@@LB@Energy -10.77 kcal/mol@LB@Hybridization Energy -30.9169 kcal/mol@LB@Unfolding Energy - mRNA 5.09004 kcal/mol@LB@Unfolding Energy - sRNA 15.0537 kcal/mol@LB@@LB@Position - mRNA 8 -- 32@LB@Position - sRNA 56 -- 86@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 79 -- 85@LB@ |
101 |
0.005473 |
0.1855 |
b1129 |
phoQ |
-8.66 |
0.244665 |
211 -- 219 |
79 -- 87 |
sensory histidine kinase in two-component regulatory system with PhoP |
|
_____________210_______220\n_____________|_________|\n5'-AUG...AAAAU_________UUUUU...GAA-3'\n______________UACUGCGUC\n______________|||||||:|\n______________AUGACGCGG\n3'-UUU...CGCUU_________UUGUG...GUG-5'\n_____________|_________|\n_____________88________78\n |
213 -- 219 |
79 -- 85 |
-14.7172 kcal/mol |
1.01485 kcal/mol |
5.0453 kcal/mol |
210 220@LB@ | |@LB@5'-AUG...AAAAU UUUUU...GAA-3'@LB@ UACUGCGUC@LB@ |||||||:|@LB@ AUGACGCGG@LB@3'-UUU...CGCUU UUGUG...GUG-5'@LB@ | |@LB@ 88 78@LB@@LB@@LB@Energy -8.66 kcal/mol@LB@Hybridization Energy -14.7172 kcal/mol@LB@Unfolding Energy - mRNA 1.01485 kcal/mol@LB@Unfolding Energy - sRNA 5.0453 kcal/mol@LB@@LB@Position - mRNA 211 -- 219@LB@Position - sRNA 79 -- 87@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 79 -- 85@LB@ |
102 |
0.005508 |
0.1855 |
b0659 |
ybeY |
-7.73 |
0.351978 |
30 -- 54 |
64 -- 89 |
ssRNA-specific endoribonuclease; 16S rRNA 3' end maturation and quality control co-endoribonuclease working with RNase R; rRNA transcription antitermination factor |
|
_____________29_________________________55\n_____________|__________________________|\n5'-ACU...AUCGA__________________AA______AGCUU...CGC-3'\n______________AGUGCUG_GCCGAUGUCG__GAGAUC\n______________|:|:|||_|||:|:::|:__||:|||\n______________UUAUGAC_CGGUUGUGGU__CUUUAG\n3'-UUU...CGCGC_______G__________CC______AACCG...GUG-5'\n_____________|__________________________|\n_____________90_________________________63\n |
30 -- 36 |
83 -- 89 |
-23.8058 kcal/mol |
8.19456 kcal/mol |
7.88317 kcal/mol |
29 55@LB@ | |@LB@5'-ACU...AUCGA AA AGCUU...CGC-3'@LB@ AGUGCUG GCCGAUGUCG GAGAUC@LB@ |:|:||| |||:|:::|: ||:|||@LB@ UUAUGAC CGGUUGUGGU CUUUAG@LB@3'-UUU...CGCGC G CC AACCG...GUG-5'@LB@ | |@LB@ 90 63@LB@@LB@@LB@Energy -7.73 kcal/mol@LB@Hybridization Energy -23.8058 kcal/mol@LB@Unfolding Energy - mRNA 8.19456 kcal/mol@LB@Unfolding Energy - sRNA 7.88317 kcal/mol@LB@@LB@Position - mRNA 30 -- 54@LB@Position - sRNA 64 -- 89@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 83 -- 89@LB@ |