187 |
0.01114 |
0.2089 |
b0801 |
ybiC |
-12.72 |
0.041489 |
266 -- 279 |
27 -- 40 |
putative dehydrogenase |
b0517 |
_____________265____________280\n_____________|______________|\n5'-GCU...CGUCA_______A______AACAA...UUG-3'\n______________GAUGGGU_GCGAGG\n______________||||:||_:|:|||\n______________CUACUCA_UGUUCC\n3'-UUU...UAAUA_______A______CGUGU...GUG-5'\n_____________|______________|\n_____________41_____________26\n |
266 -- 272 |
34 -- 40 |
-18.8068 kcal/mol |
3.48138 kcal/mol |
2.60767 kcal/mol |
265 280@LB@ | |@LB@5'-GCU...CGUCA A AACAA...UUG-3'@LB@ GAUGGGU GCGAGG@LB@ ||||:|| :|:|||@LB@ CUACUCA UGUUCC@LB@3'-UUU...UAAUA A CGUGU...GUG-5'@LB@ | |@LB@ 41 26@LB@@LB@@LB@Energy -12.72 kcal/mol@LB@Hybridization Energy -18.8068 kcal/mol@LB@Unfolding Energy - mRNA 3.48138 kcal/mol@LB@Unfolding Energy - sRNA 2.60767 kcal/mol@LB@@LB@Position - mRNA 266 -- 279@LB@Position - sRNA 27 -- 40@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 34 -- 40@LB@ |
108 |
0.005783 |
0.1855 |
b3951 |
pflD |
-15.90 |
0.009733 |
233 -- 258 |
63 -- 86 |
putative glycine radical domain-containing pyruvate formate-lyase |
b0823 |
_____________232________________________259\n_____________|__________________________|\n5'-GAU...ACUGC_____UU_________C_U_______CGCUG...AAA-3'\n______________ACUGU__GCCAAUACC_G_GAAAUCU\n______________||||:__|||||:|||_|_|||||||\n______________UGACG__CGGUUGUGG_C_CUUUAGA\n3'-UUU...GCUUA________________U_C_______ACCGA...GUG-5'\n_____________|__________________________|\n_____________87_________________________62\n |
252 -- 258 |
63 -- 69 |
-27.9307 kcal/mol |
4.64309 kcal/mol |
7.38602 kcal/mol |
232 259@LB@ | |@LB@5'-GAU...ACUGC UU C U CGCUG...AAA-3'@LB@ ACUGU GCCAAUACC G GAAAUCU@LB@ ||||: |||||:||| | |||||||@LB@ UGACG CGGUUGUGG C CUUUAGA@LB@3'-UUU...GCUUA U C ACCGA...GUG-5'@LB@ | |@LB@ 87 62@LB@@LB@@LB@Energy -15.90 kcal/mol@LB@Hybridization Energy -27.9307 kcal/mol@LB@Unfolding Energy - mRNA 4.64309 kcal/mol@LB@Unfolding Energy - sRNA 7.38602 kcal/mol@LB@@LB@Position - mRNA 233 -- 258@LB@Position - sRNA 63 -- 86@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 63 -- 69@LB@ |
161 |
0.009429 |
0.2062 |
b1372 |
stfR |
-7.17 |
0.431291 |
283 -- 297 |
69 -- 83 |
Rac prophage; putative tail fiber protein |
b1547 |
_____________282_____________298\n_____________|_______________|\n5'-CAC...AAAAC__AA________C__UGG-3'\n______________GU__CAGCACCA_GG\n______________|:__||:|||||_||\n______________CG__GUUGUGGU_CC\n3'-UUU...UAUGA__CG________C__UUUAG...GUG-5'\n_____________|_______________|\n_____________84______________68\n |
288 -- 294 |
72 -- 78 |
-17.3245 kcal/mol |
2.81769 kcal/mol |
7.33837 kcal/mol |
282 298@LB@ | |@LB@5'-CAC...AAAAC AA C UGG-3'@LB@ GU CAGCACCA GG@LB@ |: ||:||||| ||@LB@ CG GUUGUGGU CC@LB@3'-UUU...UAUGA CG C UUUAG...GUG-5'@LB@ | |@LB@ 84 68@LB@@LB@@LB@Energy -7.17 kcal/mol@LB@Hybridization Energy -17.3245 kcal/mol@LB@Unfolding Energy - mRNA 2.81769 kcal/mol@LB@Unfolding Energy - sRNA 7.33837 kcal/mol@LB@@LB@Position - mRNA 283 -- 297@LB@Position - sRNA 69 -- 83@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 72 -- 78@LB@ |
117 |
0.006292 |
0.1893 |
b1769 |
ydjE |
-12.05 |
0.056060 |
116 -- 139 |
36 -- 59 |
putative MFS sugar transporter membrane protein |
b1775 |
_____________115______________________140\n_____________|________________________|\n5'-AUU...UGUUC_______U____A__AA_______UAAAG...UAA-3'\n______________CUGCGCC_UGAA_UA__AUGAUGA\n______________|||||||_|:||_||__|||||||\n______________GACGCGG_AUUU_AU__UACUACU\n3'-UUU...GAACC_______C____A__AA_______CAAUG...GUG-5'\n_____________|________________________|\n_____________60_______________________35\n |
133 -- 139 |
36 -- 42 |
-22.8542 kcal/mol |
3.06151 kcal/mol |
7.74108 kcal/mol |
115 140@LB@ | |@LB@5'-AUU...UGUUC U A AA UAAAG...UAA-3'@LB@ CUGCGCC UGAA UA AUGAUGA@LB@ ||||||| |:|| || |||||||@LB@ GACGCGG AUUU AU UACUACU@LB@3'-UUU...GAACC C A AA CAAUG...GUG-5'@LB@ | |@LB@ 60 35@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -22.8542 kcal/mol@LB@Unfolding Energy - mRNA 3.06151 kcal/mol@LB@Unfolding Energy - sRNA 7.74108 kcal/mol@LB@@LB@Position - mRNA 116 -- 139@LB@Position - sRNA 36 -- 59@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 36 -- 42@LB@ |
97 |
0.005188 |
0.1855 |
b3060 |
ttdR |
-16.80 |
0.006462 |
125 -- 147 |
67 -- 90 |
transcriptional activator of ttdABT |
b1799 |
_____________124______________________148\n_____________|________________________|\n5'-UCC...AGAAU________________G_______UGGCA...CGC-3'\n______________GAAUAUUGCGCCAG_A_CAGGGAA\n______________|||||:|||||||:_|_|||||||\n______________CUUAUGACGCGGUU_U_GUCCCUU\n3'-UUU...ACGCG______________G_G_______UAGAA...GUG-5'\n_____________|________________________|\n_____________91_______________________66\n |
141 -- 147 |
67 -- 73 |
-34.0784 kcal/mol |
7.10756 kcal/mol |
10.1694 kcal/mol |
124 148@LB@ | |@LB@5'-UCC...AGAAU G UGGCA...CGC-3'@LB@ GAAUAUUGCGCCAG A CAGGGAA@LB@ |||||:|||||||: | |||||||@LB@ CUUAUGACGCGGUU U GUCCCUU@LB@3'-UUU...ACGCG G G UAGAA...GUG-5'@LB@ | |@LB@ 91 66@LB@@LB@@LB@Energy -16.80 kcal/mol@LB@Hybridization Energy -34.0784 kcal/mol@LB@Unfolding Energy - mRNA 7.10756 kcal/mol@LB@Unfolding Energy - sRNA 10.1694 kcal/mol@LB@@LB@Position - mRNA 125 -- 147@LB@Position - sRNA 67 -- 90@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 67 -- 73@LB@ |
125 |
0.006795 |
0.1914 |
b3003 |
yghA |
-11.52 |
0.071261 |
264 -- 274 |
70 -- 80 |
putative oxidoreductase |
b2902 |
_____________263_________275\n_____________|___________|\n5'-AAC...AACAA___________CAUCC...UAC-3'\n______________CCGACGCCAGG\n______________||:||:|||||\n______________GGUUGUGGUCC\n3'-UUU...GACGC___________CUUUA...GUG-5'\n_____________|___________|\n_____________81__________69\n |
268 -- 274 |
70 -- 76 |
-20.3781 kcal/mol |
2.1599 kcal/mol |
6.70146 kcal/mol |
263 275@LB@ | |@LB@5'-AAC...AACAA CAUCC...UAC-3'@LB@ CCGACGCCAGG@LB@ ||:||:|||||@LB@ GGUUGUGGUCC@LB@3'-UUU...GACGC CUUUA...GUG-5'@LB@ | |@LB@ 81 69@LB@@LB@@LB@Energy -11.52 kcal/mol@LB@Hybridization Energy -20.3781 kcal/mol@LB@Unfolding Energy - mRNA 2.1599 kcal/mol@LB@Unfolding Energy - sRNA 6.70146 kcal/mol@LB@@LB@Position - mRNA 264 -- 274@LB@Position - sRNA 70 -- 80@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 70 -- 76@LB@ |
160 |
0.009416 |
0.2062 |
b2095 |
gatZ |
-8.10 |
0.305092 |
155 -- 170 |
18 -- 33 |
D-tagatose 1 6-bisphosphate aldolase 2 subunit |
b3132 |
_____________154______________171\n_____________|________________|\n5'-AAU...GUGGC__________G_____AACGC...UUG-3'\n______________UGCGAGGGCA_GGCAU\n______________|:|:||||||_:|||:\n______________AUGUUCCCGU_UCGUG\n3'-UUU...ACUCA__________G_____ACAAA...GUG-5'\n_____________|________________|\n_____________34_______________17\n |
158 -- 164 |
24 -- 30 |
-26.3287 kcal/mol |
9.40457 kcal/mol |
8.82204 kcal/mol |
154 171@LB@ | |@LB@5'-AAU...GUGGC G AACGC...UUG-3'@LB@ UGCGAGGGCA GGCAU@LB@ |:|:|||||| :|||:@LB@ AUGUUCCCGU UCGUG@LB@3'-UUU...ACUCA G ACAAA...GUG-5'@LB@ | |@LB@ 34 17@LB@@LB@@LB@Energy -8.10 kcal/mol@LB@Hybridization Energy -26.3287 kcal/mol@LB@Unfolding Energy - mRNA 9.40457 kcal/mol@LB@Unfolding Energy - sRNA 8.82204 kcal/mol@LB@@LB@Position - mRNA 155 -- 170@LB@Position - sRNA 18 -- 33@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 24 -- 30@LB@ |
59 |
0.002989 |
0.1727 |
b2713 |
hydN |
-12.16 |
0.053402 |
276 -- 298 |
54 -- 76 |
formate dehydrogenase-H [4Fe-4S] ferredoxin subunit |
b3573 |
_____________275______________________299\n_____________|________________________|\n5'-CUU...UUUCU_______A_____A___A______AU-3'\n______________CAUCAGG_AAAUC__GG_CUGUGC\n______________||:||||_|||||__||_|||:||\n______________GUGGUCC_UUUAG__CC_GACGCG\n3'-UUU...CGGUU_______C_____AA_________GCAUU...GUG-5'\n_____________|________________________|\n_____________77_______________________53\n |
276 -- 282 |
70 -- 76 |
-25.5609 kcal/mol |
4.47784 kcal/mol |
8.92391 kcal/mol |
275 299@LB@ | |@LB@5'-CUU...UUUCU A A A AU-3'@LB@ CAUCAGG AAAUC GG CUGUGC@LB@ ||:|||| ||||| || |||:||@LB@ GUGGUCC UUUAG CC GACGCG@LB@3'-UUU...CGGUU C AA GCAUU...GUG-5'@LB@ | |@LB@ 77 53@LB@@LB@@LB@Energy -12.16 kcal/mol@LB@Hybridization Energy -25.5609 kcal/mol@LB@Unfolding Energy - mRNA 4.47784 kcal/mol@LB@Unfolding Energy - sRNA 8.92391 kcal/mol@LB@@LB@Position - mRNA 276 -- 298@LB@Position - sRNA 54 -- 76@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 70 -- 76@LB@ |
120 |
0.006631 |
0.1913 |
b0825 |
fsaA |
-14.24 |
0.020734 |
15 -- 76 |
31 -- 86 |
fructose-6-phosphate aldolase 1 |
b3946 |
_____________14_____________________________________________________________77\n_____________|______________________________________________________________|\n5'-CUU...AUACG__C____G__________CC___A___G_CGAGUA______AAU____AAAAUCAU______CUCUC...CCG-3'\n______________AC_GUGC_GAUACCGGGG__AUC_UGG_U______GCGCUG___AUUG________AGUUGC\n______________||_|:||_:|:|||:|||__|||_|||_|______||||:|___|||:________||||:|\n______________UG_CGCG_UUGUGGUCCC__UAG_ACC_A______CGCGGC___UAAU________UCAAUG\n3'-UUU...GCUUA__A____G__________UU___A___G_____________AUU____AAUACUAC______UUCCC...GUG-5'\n_____________|______________________________________________________________|\n_____________87_____________________________________________________________30\n |
26 -- 32 |
69 -- 75 |
-46.4097 kcal/mol |
15.1018 kcal/mol |
17.0646 kcal/mol |
14 77@LB@ | |@LB@5'-CUU...AUACG C G CC A G CGAGUA AAU AAAAUCAU CUCUC...CCG-3'@LB@ AC GUGC GAUACCGGGG AUC UGG U GCGCUG AUUG AGUUGC@LB@ || |:|| :|:|||:||| ||| ||| | ||||:| |||: ||||:|@LB@ UG CGCG UUGUGGUCCC UAG ACC A CGCGGC UAAU UCAAUG@LB@3'-UUU...GCUUA A G UU A G AUU AAUACUAC UUCCC...GUG-5'@LB@ | |@LB@ 87 30@LB@@LB@@LB@Energy -14.24 kcal/mol@LB@Hybridization Energy -46.4097 kcal/mol@LB@Unfolding Energy - mRNA 15.1018 kcal/mol@LB@Unfolding Energy - sRNA 17.0646 kcal/mol@LB@@LB@Position - mRNA 15 -- 76@LB@Position - sRNA 31 -- 86@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 69 -- 75@LB@ |
169 |
0.01004 |
0.2071 |
b2384 |
ypdE |
-12.38 |
0.048278 |
93 -- 137 |
31 -- 75 |
aminopeptidase |
b4305 b3898 |
_____________92______________________________________________138\n_____________|_______________________________________________|\n5'-AUU...UAUUU_______C__GGG____G_____AUCG___A_______C________CCCGC...UGC-3'\n______________GCCAGGG_AA____GGC_UGCGC____AAG_UGUUGUG_UG_GUUAC\n______________:||||||_||____|||_|||||____||:_|:||:||_||_|||||\n______________UGGUCCC_UU____CCG_ACGCG____UUU_AUAAUAC_AC_CAAUG\n3'-UUU...GGUUG_______U__AGAA_________GCA____A_______U__U_____UUCCC...GUG-5'\n_____________|_______________________________________________|\n_____________76______________________________________________30\n |
93 -- 99 |
69 -- 75 |
-40.1479 kcal/mol |
18.4667 kcal/mol |
9.29858 kcal/mol |
92 138@LB@ | |@LB@5'-AUU...UAUUU C GGG G AUCG A C CCCGC...UGC-3'@LB@ GCCAGGG AA GGC UGCGC AAG UGUUGUG UG GUUAC@LB@ :|||||| || ||| ||||| ||: |:||:|| || |||||@LB@ UGGUCCC UU CCG ACGCG UUU AUAAUAC AC CAAUG@LB@3'-UUU...GGUUG U AGAA GCA A U U UUCCC...GUG-5'@LB@ | |@LB@ 76 30@LB@@LB@@LB@Energy -12.38 kcal/mol@LB@Hybridization Energy -40.1479 kcal/mol@LB@Unfolding Energy - mRNA 18.4667 kcal/mol@LB@Unfolding Energy - sRNA 9.29858 kcal/mol@LB@@LB@Position - mRNA 93 -- 137@LB@Position - sRNA 31 -- 75@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 69 -- 75@LB@ |