99 |
0.00311 |
0.1096 |
b2801 |
fucP |
-13.12 |
0.004165 |
162 -- 172 |
46 -- 56 |
L-fucose transporter |
|
_____________161_________173\n_____________|___________|\n5'-AUG...CAUAA___________CUUAA...CAC-3'\n______________CCGAUUACGUG\n______________|||||||||||\n______________GGCUAAUGCAC\n3'-AUU...GUUUA___________UUCAU...AUG-5'\n_____________|___________|\n_____________57__________45\n |
166 -- 172 |
46 -- 52 |
-17.4041 kcal/mol |
2.44124 kcal/mol |
1.86194 kcal/mol |
161 173@LB@ | |@LB@5'-AUG...CAUAA CUUAA...CAC-3'@LB@ CCGAUUACGUG@LB@ |||||||||||@LB@ GGCUAAUGCAC@LB@3'-AUU...GUUUA UUCAU...AUG-5'@LB@ | |@LB@ 57 45@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -17.4041 kcal/mol@LB@Unfolding Energy - mRNA 2.44124 kcal/mol@LB@Unfolding Energy - sRNA 1.86194 kcal/mol@LB@@LB@Position - mRNA 162 -- 172@LB@Position - sRNA 46 -- 56@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 46 -- 52@LB@ |
111 |
0.003555 |
0.1127 |
b2938 |
speA |
-9.18 |
0.077057 |
36 -- 48 |
46 -- 58 |
biosynthetic arginine decarboxylase PLP-binding |
|
_____________35____________49\n_____________|_____________|\n5'-GUU...CUUAC_____________CUUAA...GCA-3'\n______________GUUCGGUUAUGUG\n______________:|:||:|||:|||\n______________UAGGCUAAUGCAC\n3'-AUU...CGGUU_____________UUCAU...AUG-5'\n_____________|_____________|\n_____________59____________45\n |
42 -- 48 |
46 -- 52 |
-14.853 kcal/mol |
3.8258 kcal/mol |
1.8625 kcal/mol |
35 49@LB@ | |@LB@5'-GUU...CUUAC CUUAA...GCA-3'@LB@ GUUCGGUUAUGUG@LB@ :|:||:|||:|||@LB@ UAGGCUAAUGCAC@LB@3'-AUU...CGGUU UUCAU...AUG-5'@LB@ | |@LB@ 59 45@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -14.853 kcal/mol@LB@Unfolding Energy - mRNA 3.8258 kcal/mol@LB@Unfolding Energy - sRNA 1.8625 kcal/mol@LB@@LB@Position - mRNA 36 -- 48@LB@Position - sRNA 46 -- 58@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 46 -- 52@LB@ |
26 |
0.0002109 |
0.02687 |
b4122 |
fumB |
-13.50 |
0.002989 |
276 -- 286 |
47 -- 57 |
anaerobic class I fumarate hydratase (fumarase B) |
b1612 |
_____________275_________287\n_____________|___________|\n5'-UCC...UCACU___________UAGCG...ACU-3'\n______________UCCGAUUACGU\n______________|||||||||||\n______________AGGCUAAUGCA\n3'-AUU...GGUUU___________CUUCA...AUG-5'\n_____________|___________|\n_____________58__________46\n |
280 -- 286 |
47 -- 53 |
-16.5827 kcal/mol |
1.51899 kcal/mol |
1.56839 kcal/mol |
275 287@LB@ | |@LB@5'-UCC...UCACU UAGCG...ACU-3'@LB@ UCCGAUUACGU@LB@ |||||||||||@LB@ AGGCUAAUGCA@LB@3'-AUU...GGUUU CUUCA...AUG-5'@LB@ | |@LB@ 58 46@LB@@LB@@LB@Energy -13.50 kcal/mol@LB@Hybridization Energy -16.5827 kcal/mol@LB@Unfolding Energy - mRNA 1.51899 kcal/mol@LB@Unfolding Energy - sRNA 1.56839 kcal/mol@LB@@LB@Position - mRNA 276 -- 286@LB@Position - sRNA 47 -- 57@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 47 -- 53@LB@ |
39 |
0.0004396 |
0.03766 |
b3669 |
uhpA |
-8.50 |
0.116685 |
77 -- 96 |
47 -- 66 |
response regulator in two-component regulatory system wtih UhpB |
|
_____________76___________________97\n_____________|____________________|\n5'-UCA...CGUAA______C_______CG____UUAAC...UUG-3'\n______________UCAGUC_GAUCCGA__AUGU\n______________||||:|_:||||||__|:||\n______________AGUCGG_UUAGGCU__UGCA\n3'-AUU...UUAUA______U_______AA____CUUCA...AUG-5'\n_____________|____________________|\n_____________67___________________46\n |
84 -- 90 |
53 -- 59 |
-21.6061 kcal/mol |
5.63687 kcal/mol |
7.4916 kcal/mol |
76 97@LB@ | |@LB@5'-UCA...CGUAA C CG UUAAC...UUG-3'@LB@ UCAGUC GAUCCGA AUGU@LB@ ||||:| :|||||| |:||@LB@ AGUCGG UUAGGCU UGCA@LB@3'-AUU...UUAUA U AA CUUCA...AUG-5'@LB@ | |@LB@ 67 46@LB@@LB@@LB@Energy -8.50 kcal/mol@LB@Hybridization Energy -21.6061 kcal/mol@LB@Unfolding Energy - mRNA 5.63687 kcal/mol@LB@Unfolding Energy - sRNA 7.4916 kcal/mol@LB@@LB@Position - mRNA 77 -- 96@LB@Position - sRNA 47 -- 66@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 53 -- 59@LB@ |
107 |
0.003396 |
0.1101 |
b3871 |
typA |
-9.79 |
0.052081 |
283 -- 294 |
47 -- 59 |
GTP-binding protein |
|
_____________282___________295\n_____________|_____________|\n5'-UGC...CCAAC_____________UCGACU-3'\n______________AAUCCGGU_ACGU\n______________||||||:|_||||\n______________UUAGGCUA_UGCA\n3'-AUU...UCGGU________A____CUUCA...AUG-5'\n_____________|_____________|\n_____________60____________46\n |
284 -- 290 |
52 -- 58 |
-13.0383 kcal/mol |
1.68034 kcal/mol |
1.56852 kcal/mol |
282 295@LB@ | |@LB@5'-UGC...CCAAC UCGACU-3'@LB@ AAUCCGGU ACGU@LB@ ||||||:| ||||@LB@ UUAGGCUA UGCA@LB@3'-AUU...UCGGU A CUUCA...AUG-5'@LB@ | |@LB@ 60 46@LB@@LB@@LB@Energy -9.79 kcal/mol@LB@Hybridization Energy -13.0383 kcal/mol@LB@Unfolding Energy - mRNA 1.68034 kcal/mol@LB@Unfolding Energy - sRNA 1.56852 kcal/mol@LB@@LB@Position - mRNA 283 -- 294@LB@Position - sRNA 47 -- 59@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 52 -- 58@LB@ |
24 |
0.0002009 |
0.02687 |
b1487 |
ddpA |
-9.43 |
0.065911 |
261 -- 269 |
48 -- 56 |
D D-dipeptide ABC transporter periplasmic binding protein |
|
_____________260_______270\n_____________|_________|\n5'-UCA...AUUUC_________CACGC...UGA-3'\n______________CCGGUUGCG\n______________|||:||:||\n______________GGCUAAUGC\n3'-AUU...GUUUA_________ACUUC...AUG-5'\n_____________|_________|\n_____________57________47\n |
263 -- 269 |
48 -- 54 |
-13.2683 kcal/mol |
2.26031 kcal/mol |
1.55919 kcal/mol |
260 270@LB@ | |@LB@5'-UCA...AUUUC CACGC...UGA-3'@LB@ CCGGUUGCG@LB@ |||:||:||@LB@ GGCUAAUGC@LB@3'-AUU...GUUUA ACUUC...AUG-5'@LB@ | |@LB@ 57 47@LB@@LB@@LB@Energy -9.43 kcal/mol@LB@Hybridization Energy -13.2683 kcal/mol@LB@Unfolding Energy - mRNA 2.26031 kcal/mol@LB@Unfolding Energy - sRNA 1.55919 kcal/mol@LB@@LB@Position - mRNA 261 -- 269@LB@Position - sRNA 48 -- 56@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 48 -- 54@LB@ |
27 |
0.0002115 |
0.02687 |
b2607 |
trmD |
-14.32 |
0.001383 |
229 -- 258 |
48 -- 75 |
tRNA m(1)G37 methyltransferase SAM-dependent |
|
_____________228____________________________259\n_____________|______________________________|\n5'-UCG...GUUUC___________C__G___U_A_________GGGUA...UCC-3'\n______________CUGAAAUGUUC_GC_CAA_U_CCGAUUACG\n______________||:||||:|||_||_|||_|_|||||||||\n______________GAUUUUAUAAG_CG_GUU_A_GGCUAAUGC\n3'-AUU...CCGCC___________U______U___________ACUUC...AUG-5'\n_____________|______________________________|\n_____________76_____________________________47\n |
252 -- 258 |
48 -- 54 |
-28.476 kcal/mol |
6.50272 kcal/mol |
7.67232 kcal/mol |
228 259@LB@ | |@LB@5'-UCG...GUUUC C G U A GGGUA...UCC-3'@LB@ CUGAAAUGUUC GC CAA U CCGAUUACG@LB@ ||:||||:||| || ||| | |||||||||@LB@ GAUUUUAUAAG CG GUU A GGCUAAUGC@LB@3'-AUU...CCGCC U U ACUUC...AUG-5'@LB@ | |@LB@ 76 47@LB@@LB@@LB@Energy -14.32 kcal/mol@LB@Hybridization Energy -28.476 kcal/mol@LB@Unfolding Energy - mRNA 6.50272 kcal/mol@LB@Unfolding Energy - sRNA 7.67232 kcal/mol@LB@@LB@Position - mRNA 229 -- 258@LB@Position - sRNA 48 -- 75@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 48 -- 54@LB@ |
30 |
0.0002612 |
0.03063 |
b3789 |
rffH |
-9.15 |
0.078548 |
244 -- 254 |
48 -- 58 |
glucose-1-phosphate thymidylyltransferase |
|
_____________243_________255\n_____________|___________|\n5'-GGC...AUUGC___________CGCGG...UGA-3'\n______________AUCCGAUUACG\n______________|||||||||||\n______________UAGGCUAAUGC\n3'-AUU...CGGUU___________ACUUC...AUG-5'\n_____________|___________|\n_____________59__________47\n |
248 -- 254 |
48 -- 54 |
-15.7126 kcal/mol |
4.98099 kcal/mol |
1.55987 kcal/mol |
243 255@LB@ | |@LB@5'-GGC...AUUGC CGCGG...UGA-3'@LB@ AUCCGAUUACG@LB@ |||||||||||@LB@ UAGGCUAAUGC@LB@3'-AUU...CGGUU ACUUC...AUG-5'@LB@ | |@LB@ 59 47@LB@@LB@@LB@Energy -9.15 kcal/mol@LB@Hybridization Energy -15.7126 kcal/mol@LB@Unfolding Energy - mRNA 4.98099 kcal/mol@LB@Unfolding Energy - sRNA 1.55987 kcal/mol@LB@@LB@Position - mRNA 244 -- 254@LB@Position - sRNA 48 -- 58@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 48 -- 54@LB@ |
62 |
0.001059 |
0.05856 |
b3927 |
glpF |
-11.40 |
0.016677 |
192 -- 203 |
48 -- 59 |
glycerol facilitator |
|
_____________191__________204\n_____________|____________|\n5'-GAU...UUCAG____________AGUCA...AAG-3'\n______________GAUCCGAUUAUG\n______________:|||||||||:|\n______________UUAGGCUAAUGC\n3'-AUU...UCGGU____________ACUUC...AUG-5'\n_____________|____________|\n_____________60___________47\n |
197 -- 203 |
48 -- 54 |
-15.6898 kcal/mol |
2.7066 kcal/mol |
1.55995 kcal/mol |
191 204@LB@ | |@LB@5'-GAU...UUCAG AGUCA...AAG-3'@LB@ GAUCCGAUUAUG@LB@ :|||||||||:|@LB@ UUAGGCUAAUGC@LB@3'-AUU...UCGGU ACUUC...AUG-5'@LB@ | |@LB@ 60 47@LB@@LB@@LB@Energy -11.40 kcal/mol@LB@Hybridization Energy -15.6898 kcal/mol@LB@Unfolding Energy - mRNA 2.7066 kcal/mol@LB@Unfolding Energy - sRNA 1.55995 kcal/mol@LB@@LB@Position - mRNA 192 -- 203@LB@Position - sRNA 48 -- 59@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 48 -- 54@LB@ |
71 |
0.001214 |
0.05856 |
b1921 |
fliZ |
-11.32 |
0.017729 |
260 -- 276 |
48 -- 65 |
RpoS antagonist; putative regulator of FliA activity |
|
_____________259________________277\n_____________|__________________|\n5'-UGC...AAACA___________C______CGCAU...AUC-3'\n______________CAGCCAGA_CC_AUUGCG\n______________||||||:|_||_|||:||\n______________GUCGGUUU_GG_UAAUGC\n3'-AUU...UAUAA________A__C______ACUUC...AUG-5'\n_____________|__________________|\n_____________66_________________47\n |
261 -- 267 |
58 -- 64 |
-20.8295 kcal/mol |
2.05358 kcal/mol |
7.47467 kcal/mol |
259 277@LB@ | |@LB@5'-UGC...AAACA C CGCAU...AUC-3'@LB@ CAGCCAGA CC AUUGCG@LB@ ||||||:| || |||:||@LB@ GUCGGUUU GG UAAUGC@LB@3'-AUU...UAUAA A C ACUUC...AUG-5'@LB@ | |@LB@ 66 47@LB@@LB@@LB@Energy -11.32 kcal/mol@LB@Hybridization Energy -20.8295 kcal/mol@LB@Unfolding Energy - mRNA 2.05358 kcal/mol@LB@Unfolding Energy - sRNA 7.47467 kcal/mol@LB@@LB@Position - mRNA 260 -- 276@LB@Position - sRNA 48 -- 65@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 58 -- 64@LB@ |