1 |
6.997e-05 |
0.03358 |
ct_198 |
oppA_3 |
-8.59 |
0.062291 |
189 -- 206 |
17 -- 33 |
oligopeptide ABC transporter substrate-binding protein |
|
_____________188________________207\n_____________|__________________|\n5'-AAA...UCUAA______C________C__AAGAU...CUC-3'\n______________GGAGGU_AUUCCAUG_GC\n______________:||:|:_||||||||_||\n______________UCUUCG_UAAGGUAC_CG\n3'-UUU...CUCAG______A___________CAAUC...GAA-5'\n_____________|__________________|\n_____________34_________________16\n |
197 -- 203 |
19 -- 25 |
-19.6111 kcal/mol |
6.04348 kcal/mol |
4.97804 kcal/mol |
188 207@LB@ | |@LB@5'-AAA...UCUAA C C AAGAU...CUC-3'@LB@ GGAGGU AUUCCAUG GC@LB@ :||:|: |||||||| ||@LB@ UCUUCG UAAGGUAC CG@LB@3'-UUU...CUCAG A CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -8.59 kcal/mol@LB@Hybridization Energy -19.6111 kcal/mol@LB@Unfolding Energy - mRNA 6.04348 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 189 -- 206@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 19 -- 25@LB@ |
2 |
8.171e-05 |
0.03358 |
ct_802 |
rs18 |
-7.95 |
0.088258 |
66 -- 79 |
21 -- 34 |
30S ribosomal protein S18 |
|
_____________65_____________80\n_____________|______________|\n5'-GUU...AGCCC__________CG__GAGUU...UUA-3'\n______________CAGAAGCUAU__CA\n______________||||||||||__||\n______________GUCUUCGAUA__GU\n3'-UUU...UCUCA__________AG__ACCGC...GAA-5'\n_____________|______________|\n_____________35_____________20\n |
68 -- 74 |
26 -- 32 |
-17.0234 kcal/mol |
4.34679 kcal/mol |
4.73132 kcal/mol |
65 80@LB@ | |@LB@5'-GUU...AGCCC CG GAGUU...UUA-3'@LB@ CAGAAGCUAU CA@LB@ |||||||||| ||@LB@ GUCUUCGAUA GU@LB@3'-UUU...UCUCA AG ACCGC...GAA-5'@LB@ | |@LB@ 35 20@LB@@LB@@LB@Energy -7.95 kcal/mol@LB@Hybridization Energy -17.0234 kcal/mol@LB@Unfolding Energy - mRNA 4.34679 kcal/mol@LB@Unfolding Energy - sRNA 4.73132 kcal/mol@LB@@LB@Position - mRNA 66 -- 79@LB@Position - sRNA 21 -- 34@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 26 -- 32@LB@ |
3 |
0.0003482 |
0.07439 |
ct_023 |
prfA |
-10.22 |
0.024627 |
158 -- 204 |
18 -- 56 |
peptide chain release factor |
|
_____________157_____________________________________________205\n_____________|_______________________________________________|\n5'-GAA...CUGGU______UAG_G____________AAAGG______AAGUCG_______AAAUA...CGC-3'\n______________CUUUGU___A_AGAUACUAGAGU_____CAGAAG______UUCAUGG\n______________|::|||___|_|:|:||||||||_____||||||______|:|||||\n______________GGGACA___U_UUUGUGAUCUCA_____GUCUUC______AGGUACC\n3'-UUU...AAGGG______CA__G_______________________GAUA_________GCAAU...GAA-5'\n_____________|_______________________________________________|\n_____________57______________________________________________17\n |
198 -- 204 |
18 -- 24 |
-35.7937 kcal/mol |
12.6341 kcal/mol |
12.9359 kcal/mol |
157 205@LB@ | |@LB@5'-GAA...CUGGU UAG G AAAGG AAGUCG AAAUA...CGC-3'@LB@ CUUUGU A AGAUACUAGAGU CAGAAG UUCAUGG@LB@ |::||| | |:|:|||||||| |||||| |:|||||@LB@ GGGACA U UUUGUGAUCUCA GUCUUC AGGUACC@LB@3'-UUU...AAGGG CA G GAUA GCAAU...GAA-5'@LB@ | |@LB@ 57 17@LB@@LB@@LB@Energy -10.22 kcal/mol@LB@Hybridization Energy -35.7937 kcal/mol@LB@Unfolding Energy - mRNA 12.6341 kcal/mol@LB@Unfolding Energy - sRNA 12.9359 kcal/mol@LB@@LB@Position - mRNA 158 -- 204@LB@Position - sRNA 18 -- 56@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 18 -- 24@LB@ |
4 |
0.0004436 |
0.07439 |
ct_864 |
xerD |
-16.31 |
0.000480 |
24 -- 38 |
17 -- 31 |
site-specific tyrosine recombinase XerD |
|
_____________23______________39\n_____________|_______________|\n5'-CAU...AUGGA_______________ACCUU...AUU-3'\n______________GAGCUAUUCCAUGGU\n______________:|||||||||||||:\n______________UUCGAUAAGGUACCG\n3'-UUU...CAGUC_______________CAAUC...GAA-5'\n_____________|_______________|\n_____________32______________16\n |
32 -- 38 |
17 -- 23 |
-24.2689 kcal/mol |
3.09995 kcal/mol |
4.86101 kcal/mol |
23 39@LB@ | |@LB@5'-CAU...AUGGA ACCUU...AUU-3'@LB@ GAGCUAUUCCAUGGU@LB@ :|||||||||||||:@LB@ UUCGAUAAGGUACCG@LB@3'-UUU...CAGUC CAAUC...GAA-5'@LB@ | |@LB@ 32 16@LB@@LB@@LB@Energy -16.31 kcal/mol@LB@Hybridization Energy -24.2689 kcal/mol@LB@Unfolding Energy - mRNA 3.09995 kcal/mol@LB@Unfolding Energy - sRNA 4.86101 kcal/mol@LB@@LB@Position - mRNA 24 -- 38@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 17 -- 23@LB@ |
5 |
0.0004969 |
0.07439 |
ct_056 |
N/A |
-17.69 |
0.000175 |
196 -- 255 |
6 -- 56 |
|
|
_____________195________________________________________________________________256\n_____________|__________________________________________________________________|\n5'-GUG...AGGAU_____AU__________CCCU__C______UUACGUAAACAGACAU_______A____________UUCCU...AAG-3'\n______________CCCUG______GACACU____UC_GAAGCU________________UUCC_UG__GUUAGAAUACC\n______________|||||______:|||||____||_||||||________________||||_||__|||||||||||\n______________GGGAC______UUGUGA____AG_CUUCGA________________AAGG_AC__CAAUCUUAUGG\n3'-UUU...AAGGG_____ACAUGU______UCUC__U______U___________________U__CG___________UUGAA-5'\n_____________|__________________________________________________________________|\n_____________57_________________________________________________________________5\n |
249 -- 255 |
6 -- 12 |
-39.697 kcal/mol |
5.45688 kcal/mol |
16.5497 kcal/mol |
195 256@LB@ | |@LB@5'-GUG...AGGAU AU CCCU C UUACGUAAACAGACAU A UUCCU...AAG-3'@LB@ CCCUG GACACU UC GAAGCU UUCC UG GUUAGAAUACC@LB@ ||||| :||||| || |||||| |||| || |||||||||||@LB@ GGGAC UUGUGA AG CUUCGA AAGG AC CAAUCUUAUGG@LB@3'-UUU...AAGGG ACAUGU UCUC U U U CG UUGAA-5'@LB@ | |@LB@ 57 5@LB@@LB@@LB@Energy -17.69 kcal/mol@LB@Hybridization Energy -39.697 kcal/mol@LB@Unfolding Energy - mRNA 5.45688 kcal/mol@LB@Unfolding Energy - sRNA 16.5497 kcal/mol@LB@@LB@Position - mRNA 196 -- 255@LB@Position - sRNA 6 -- 56@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 6 -- 12@LB@ |
6 |
0.000543 |
0.07439 |
ct_280 |
nqr4 |
-8.45 |
0.067322 |
89 -- 131 |
2 -- 35 |
Na(+)-translocating NADH-quinone reductase subunit D |
|
_____________88___________________________________________132\n_____________|____________________________________________|\n5'-GAC...GAAUU__________C___GACUUGUA_________CC_______UU__CUCAU...CGG-3'\n______________UCAGGAGCUA_UUU________AUGGUGUUA__GAAU_CC__CU\n______________||||:|||||_|::________||||:||||__||||_||__||\n______________AGUCUUCGAU_AGG________UACCGCAAU__CUUA_GG__GA\n3'-UUU...AUCUC__________A__________________________U__UU__A-5'\n_____________|____________________________________________|\n_____________36___________________________________________1\n |
113 -- 119 |
13 -- 19 |
-28.603 kcal/mol |
11.5634 kcal/mol |
8.59199 kcal/mol |
88 132@LB@ | |@LB@5'-GAC...GAAUU C GACUUGUA CC UU CUCAU...CGG-3'@LB@ UCAGGAGCUA UUU AUGGUGUUA GAAU CC CU@LB@ ||||:||||| |:: ||||:|||| |||| || ||@LB@ AGUCUUCGAU AGG UACCGCAAU CUUA GG GA@LB@3'-UUU...AUCUC A U UU A-5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -8.45 kcal/mol@LB@Hybridization Energy -28.603 kcal/mol@LB@Unfolding Energy - mRNA 11.5634 kcal/mol@LB@Unfolding Energy - sRNA 8.59199 kcal/mol@LB@@LB@Position - mRNA 89 -- 131@LB@Position - sRNA 2 -- 35@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 13 -- 19@LB@ |
7 |
0.0007305 |
0.07962 |
ct_505 |
gapA |
-11.17 |
0.013986 |
23 -- 47 |
19 -- 39 |
glyceraldehyde-3-phosphate dehydrogenase |
|
_____________22________________________48\n_____________|_________________________|\n5'-GUC...AUAGA______AUUG___________G___UGUUA...AUU-3'\n______________AGAGUC____GGAAGUUAUUU_AUG\n______________||||||____:||||:||||:_|||\n______________UCUCAG____UCUUCGAUAAG_UAC\n3'-UUU...UGUGA_____________________G___CGCAA...GAA-5'\n_____________|_________________________|\n_____________40________________________18\n |
34 -- 40 |
26 -- 32 |
-23.0041 kcal/mol |
2.2627 kcal/mol |
9.5668 kcal/mol |
22 48@LB@ | |@LB@5'-GUC...AUAGA AUUG G UGUUA...AUU-3'@LB@ AGAGUC GGAAGUUAUUU AUG@LB@ |||||| :||||:||||: |||@LB@ UCUCAG UCUUCGAUAAG UAC@LB@3'-UUU...UGUGA G CGCAA...GAA-5'@LB@ | |@LB@ 40 18@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -23.0041 kcal/mol@LB@Unfolding Energy - mRNA 2.2627 kcal/mol@LB@Unfolding Energy - sRNA 9.5668 kcal/mol@LB@@LB@Position - mRNA 23 -- 47@LB@Position - sRNA 19 -- 39@LB@Position Seed - mRNA 34 -- 40@LB@Position Seed - sRNA 26 -- 32@LB@ |
8 |
0.0008373 |
0.07962 |
ct_066 |
N/A |
-11.14 |
0.014316 |
190 -- 205 |
17 -- 33 |
|
|
_____________189_______________206\n_____________|_________________|\n5'-UUU...CACUA_________________UACGG...GUU-3'\n______________AGGAGCUAUUC_AUGGC\n______________||:||||||||_|||||\n______________UCUUCGAUAAG_UACCG\n3'-UUU...CUCAG___________G_____CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
194 -- 200 |
23 -- 29 |
-22.6652 kcal/mol |
6.55112 kcal/mol |
4.97804 kcal/mol |
189 206@LB@ | |@LB@5'-UUU...CACUA UACGG...GUU-3'@LB@ AGGAGCUAUUC AUGGC@LB@ ||:|||||||| |||||@LB@ UCUUCGAUAAG UACCG@LB@3'-UUU...CUCAG G CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -22.6652 kcal/mol@LB@Unfolding Energy - mRNA 6.55112 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 190 -- 205@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 23 -- 29@LB@ |
9 |
0.0008717 |
0.07962 |
ct_743 |
hctA |
-7.87 |
0.092034 |
214 -- 220 |
82 -- 88 |
histone H1-like protein |
|
_____________213_____221\n_____________|_______|\n5'-GUU...AAAAG_______AAAAA...AAA-3'\n______________AUACGGC\n______________|||||||\n______________UAUGCCG\n3'-UUU...GCCUC_______AUUGA...GAA-5'\n_____________|_______|\n_____________89______81\n |
214 -- 220 |
82 -- 88 |
-10.5788 kcal/mol |
1.61458 kcal/mol |
1.09753 kcal/mol |
213 221@LB@ | |@LB@5'-GUU...AAAAG AAAAA...AAA-3'@LB@ AUACGGC@LB@ |||||||@LB@ UAUGCCG@LB@3'-UUU...GCCUC AUUGA...GAA-5'@LB@ | |@LB@ 89 81@LB@@LB@@LB@Energy -7.87 kcal/mol@LB@Hybridization Energy -10.5788 kcal/mol@LB@Unfolding Energy - mRNA 1.61458 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 214 -- 220@LB@Position - sRNA 82 -- 88@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 82 -- 88@LB@ |
10 |
0.001873 |
0.154 |
ct_367 |
aroL |
-15.55 |
0.000817 |
132 -- 208 |
3 -- 59 |
shikimate kinase |
|
_____________131_______________________________________________________________________________209\n_____________|_________________________________________________________________________________|\n5'-UGU...ACAAA_______CUGUAACACACA___________________UUCCA__________AUUGCA___C____CACUAC________GUUCG...UGC-3'\n______________CCCUCCU____________GUGUAUAAAUA__AGAGUU______UAUUUCGUG______GCG__AGA______AUGCCAAC\n______________|||:|||____________|||||:|||:|__|||||:______||||:|:||______|||__|||______||:|||||\n______________GGGGGGA____________CACAUGUUUGU__UCUCAG______AUAAGGUAC______CGC__UCU______UAUGGUUG\n3'-UUU...CUGAA______________________________GA______UCUUCG__________________AA_________________AA-5'\n_____________|_________________________________________________________________________________|\n_____________60________________________________________________________________________________2\n |
202 -- 208 |
3 -- 9 |
-46.252 kcal/mol |
13.1534 kcal/mol |
17.5467 kcal/mol |
131 209@LB@ | |@LB@5'-UGU...ACAAA CUGUAACACACA UUCCA AUUGCA C CACUAC GUUCG...UGC-3'@LB@ CCCUCCU GUGUAUAAAUA AGAGUU UAUUUCGUG GCG AGA AUGCCAAC@LB@ |||:||| |||||:|||:| |||||: ||||:|:|| ||| ||| ||:|||||@LB@ GGGGGGA CACAUGUUUGU UCUCAG AUAAGGUAC CGC UCU UAUGGUUG@LB@3'-UUU...CUGAA GA UCUUCG AA AA-5'@LB@ | |@LB@ 60 2@LB@@LB@@LB@Energy -15.55 kcal/mol@LB@Hybridization Energy -46.252 kcal/mol@LB@Unfolding Energy - mRNA 13.1534 kcal/mol@LB@Unfolding Energy - sRNA 17.5467 kcal/mol@LB@@LB@Position - mRNA 132 -- 208@LB@Position - sRNA 3 -- 59@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 3 -- 9@LB@ |
11 |
0.002752 |
0.1836 |
ct_015 |
phoH |
-12.12 |
0.007844 |
167 -- 186 |
33 -- 60 |
ATPase |
|
_____________166__________________________187\n_____________|____________________________|\n5'-CCA...CUAUC_____________________U______UUUAG...UAA-3'\n______________UCCCCCUU________ACACU_GAGUCA\n______________||||||:|________|||||_||||||\n______________AGGGGGGA________UGUGA_CUCAGU\n3'-UUU...ACUGA________CACAUGUU_____U______CUUCG...GAA-5'\n_____________|____________________________|\n_____________61___________________________32\n |
168 -- 174 |
53 -- 59 |
-26.4608 kcal/mol |
2.95889 kcal/mol |
11.3851 kcal/mol |
166 187@LB@ | |@LB@5'-CCA...CUAUC U UUUAG...UAA-3'@LB@ UCCCCCUU ACACU GAGUCA@LB@ ||||||:| ||||| ||||||@LB@ AGGGGGGA UGUGA CUCAGU@LB@3'-UUU...ACUGA CACAUGUU U CUUCG...GAA-5'@LB@ | |@LB@ 61 32@LB@@LB@@LB@Energy -12.12 kcal/mol@LB@Hybridization Energy -26.4608 kcal/mol@LB@Unfolding Energy - mRNA 2.95889 kcal/mol@LB@Unfolding Energy - sRNA 11.3851 kcal/mol@LB@@LB@Position - mRNA 167 -- 186@LB@Position - sRNA 33 -- 60@LB@Position Seed - mRNA 168 -- 174@LB@Position Seed - sRNA 53 -- 59@LB@ |
12 |
0.002873 |
0.1836 |
ct_040 |
ruvB |
-8.58 |
0.062725 |
112 -- 136 |
36 -- 60 |
Holliday junction DNA helicase RuvB |
|
_____________111_______________________137\n_____________|_________________________|\n5'-CAG...GGGAA_________ACUU___C________GAUGU...AAG-3'\n______________UCCCUCUUG____CAG_CGCUGGAG\n______________||||:|:||____||:_|:||:|||\n______________AGGGGGGAC____GUU_GUGAUCUC\n3'-UUU...ACUGA_________ACAU___U________AGUCU...GAA-5'\n_____________|_________________________|\n_____________61________________________35\n |
113 -- 119 |
53 -- 59 |
-26.2752 kcal/mol |
7.75429 kcal/mol |
9.944 kcal/mol |
111 137@LB@ | |@LB@5'-CAG...GGGAA ACUU C GAUGU...AAG-3'@LB@ UCCCUCUUG CAG CGCUGGAG@LB@ ||||:|:|| ||: |:||:|||@LB@ AGGGGGGAC GUU GUGAUCUC@LB@3'-UUU...ACUGA ACAU U AGUCU...GAA-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -8.58 kcal/mol@LB@Hybridization Energy -26.2752 kcal/mol@LB@Unfolding Energy - mRNA 7.75429 kcal/mol@LB@Unfolding Energy - sRNA 9.944 kcal/mol@LB@@LB@Position - mRNA 112 -- 136@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 53 -- 59@LB@ |
13 |
0.003406 |
0.1836 |
ct_744 |
N/A |
-10.55 |
0.020316 |
225 -- 240 |
17 -- 33 |
|
|
_____________224_______________241\n_____________|_________________|\n5'-AAA...UCUCU_________________UUCUG...AAU-3'\n______________GGAAGCUGUU_CAUGGU\n______________:||||||:||_|||||:\n______________UCUUCGAUAA_GUACCG\n3'-UUU...CUCAG__________G______CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
225 -- 231 |
27 -- 33 |
-21.2225 kcal/mol |
5.69382 kcal/mol |
4.97804 kcal/mol |
224 241@LB@ | |@LB@5'-AAA...UCUCU UUCUG...AAU-3'@LB@ GGAAGCUGUU CAUGGU@LB@ :||||||:|| |||||:@LB@ UCUUCGAUAA GUACCG@LB@3'-UUU...CUCAG G CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -10.55 kcal/mol@LB@Hybridization Energy -21.2225 kcal/mol@LB@Unfolding Energy - mRNA 5.69382 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 225 -- 240@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 27 -- 33@LB@ |
14 |
0.003406 |
0.1836 |
ct_744 |
N/A |
-10.55 |
0.020316 |
225 -- 240 |
17 -- 33 |
|
|
_____________224_______________241\n_____________|_________________|\n5'-AAA...UCUCU_________________UUCUG...AAU-3'\n______________GGAAGCUGUU_CAUGGU\n______________:||||||:||_|||||:\n______________UCUUCGAUAA_GUACCG\n3'-UUU...CUCAG__________G______CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
225 -- 231 |
27 -- 33 |
-21.2225 kcal/mol |
5.69382 kcal/mol |
4.97804 kcal/mol |
224 241@LB@ | |@LB@5'-AAA...UCUCU UUCUG...AAU-3'@LB@ GGAAGCUGUU CAUGGU@LB@ :||||||:|| |||||:@LB@ UCUUCGAUAA GUACCG@LB@3'-UUU...CUCAG G CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -10.55 kcal/mol@LB@Hybridization Energy -21.2225 kcal/mol@LB@Unfolding Energy - mRNA 5.69382 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 225 -- 240@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 27 -- 33@LB@ |
15 |
0.003628 |
0.1836 |
ct_134 |
N/A |
-6.77 |
0.161910 |
221 -- 229 |
80 -- 88 |
|
|
_____________220_______230\n_____________|_________|\n5'-CAA...UGUGU_________CGAUG...UUC-3'\n______________AUACGGUUA\n______________||||||:||\n______________UAUGCCGAU\n3'-UUU...GCCUC_________UGAGG...GAA-5'\n_____________|_________|\n_____________89________79\n |
223 -- 229 |
80 -- 86 |
-9.99522 kcal/mol |
2.13198 kcal/mol |
1.09753 kcal/mol |
220 230@LB@ | |@LB@5'-CAA...UGUGU CGAUG...UUC-3'@LB@ AUACGGUUA@LB@ ||||||:||@LB@ UAUGCCGAU@LB@3'-UUU...GCCUC UGAGG...GAA-5'@LB@ | |@LB@ 89 79@LB@@LB@@LB@Energy -6.77 kcal/mol@LB@Hybridization Energy -9.99522 kcal/mol@LB@Unfolding Energy - mRNA 2.13198 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 221 -- 229@LB@Position - sRNA 80 -- 88@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 80 -- 86@LB@ |
16 |
0.003859 |
0.1836 |
ct_666 |
N/A |
-9.59 |
0.035525 |
190 -- 206 |
16 -- 33 |
|
|
_____________189________________207\n_____________|__________________|\n5'-GAU...AAAAG_____G____________AGCGG...AAA-3'\n______________AGAGG_UA_UCUAUGGCG\n______________|||:|_||_||:||||||\n______________UCUUC_AU_AGGUACCGC\n3'-UUU...CUCAG_____G__A_________AAUCU...GAA-5'\n_____________|__________________|\n_____________34_________________15\n |
200 -- 206 |
16 -- 22 |
-21.7302 kcal/mol |
4.22495 kcal/mol |
7.91433 kcal/mol |
189 207@LB@ | |@LB@5'-GAU...AAAAG G AGCGG...AAA-3'@LB@ AGAGG UA UCUAUGGCG@LB@ |||:| || ||:||||||@LB@ UCUUC AU AGGUACCGC@LB@3'-UUU...CUCAG G A AAUCU...GAA-5'@LB@ | |@LB@ 34 15@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -21.7302 kcal/mol@LB@Unfolding Energy - mRNA 4.22495 kcal/mol@LB@Unfolding Energy - sRNA 7.91433 kcal/mol@LB@@LB@Position - mRNA 190 -- 206@LB@Position - sRNA 16 -- 33@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 16 -- 22@LB@ |
17 |
0.003987 |
0.1836 |
ct_843 |
rs15 |
-6.01 |
0.232273 |
282 -- 295 |
22 -- 34 |
30S ribosomal protein S15 |
|
_____________281____________296\n_____________|______________|\n5'-AGG...AUGUG____UU________GACUG-3'\n______________CAGA__GCUAUUCU\n______________||||__|||||||:\n______________GUCU__CGAUAAGG\n3'-UUU...UCUCA____U_________UACCG...GAA-5'\n_____________|______________|\n_____________35_____________21\n |
288 -- 294 |
23 -- 29 |
-14.3687 kcal/mol |
3.62939 kcal/mol |
4.72608 kcal/mol |
281 296@LB@ | |@LB@5'-AGG...AUGUG UU GACUG-3'@LB@ CAGA GCUAUUCU@LB@ |||| |||||||:@LB@ GUCU CGAUAAGG@LB@3'-UUU...UCUCA U UACCG...GAA-5'@LB@ | |@LB@ 35 21@LB@@LB@@LB@Energy -6.01 kcal/mol@LB@Hybridization Energy -14.3687 kcal/mol@LB@Unfolding Energy - mRNA 3.62939 kcal/mol@LB@Unfolding Energy - sRNA 4.72608 kcal/mol@LB@@LB@Position - mRNA 282 -- 295@LB@Position - sRNA 22 -- 34@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 23 -- 29@LB@ |
18 |
0.004135 |
0.1836 |
ct_799 |
N/A |
-8.26 |
0.074627 |
30 -- 52 |
17 -- 35 |
50S ribosomal protein L25/general stress protein Ctc |
|
_____________29______________________53\n_____________|_______________________|\n5'-AUC...AAUAA_________GCAA__A_______AGACG...GAA-3'\n______________UCAGAGGCU____GU_CCAUGGU\n______________|||||:|||____:|_||||||:\n______________AGUCUUCGA____UA_GGUACCG\n3'-UUU...AUCUC_______________A_______CAAUC...GAA-5'\n_____________|_______________________|\n_____________36______________________16\n |
46 -- 52 |
17 -- 23 |
-22.1109 kcal/mol |
8.8748 kcal/mol |
4.9781 kcal/mol |
29 53@LB@ | |@LB@5'-AUC...AAUAA GCAA A AGACG...GAA-3'@LB@ UCAGAGGCU GU CCAUGGU@LB@ |||||:||| :| ||||||:@LB@ AGUCUUCGA UA GGUACCG@LB@3'-UUU...AUCUC A CAAUC...GAA-5'@LB@ | |@LB@ 36 16@LB@@LB@@LB@Energy -8.26 kcal/mol@LB@Hybridization Energy -22.1109 kcal/mol@LB@Unfolding Energy - mRNA 8.8748 kcal/mol@LB@Unfolding Energy - sRNA 4.9781 kcal/mol@LB@@LB@Position - mRNA 30 -- 52@LB@Position - sRNA 17 -- 35@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 17 -- 23@LB@ |
19 |
0.004244 |
0.1836 |
ct_583 |
gp6D |
-9.00 |
0.049504 |
83 -- 102 |
18 -- 35 |
virulence protein GP6-D |
|
_____________82___________________103\n_____________|____________________|\n5'-UAA...CUAUC________CGCUA_______GAAAC...CUC-3'\n______________UCAGAAGC_____UCCAUGG\n______________||||||||_____|||||||\n______________AGUCUUCG_____AGGUACC\n3'-UUU...AUCUC________AUA_________GCAAU...GAA-5'\n_____________|____________________|\n_____________36___________________17\n |
96 -- 102 |
18 -- 24 |
-22.1713 kcal/mol |
8.18904 kcal/mol |
4.97803 kcal/mol |
82 103@LB@ | |@LB@5'-UAA...CUAUC CGCUA GAAAC...CUC-3'@LB@ UCAGAAGC UCCAUGG@LB@ |||||||| |||||||@LB@ AGUCUUCG AGGUACC@LB@3'-UUU...AUCUC AUA GCAAU...GAA-5'@LB@ | |@LB@ 36 17@LB@@LB@@LB@Energy -9.00 kcal/mol@LB@Hybridization Energy -22.1713 kcal/mol@LB@Unfolding Energy - mRNA 8.18904 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 83 -- 102@LB@Position - sRNA 18 -- 35@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 18 -- 24@LB@ |
20 |
0.004812 |
0.1918 |
ct_026 |
rs16 |
-8.27 |
0.073959 |
26 -- 51 |
3 -- 33 |
30S ribosomal protein S16 |
|
_____________25______________________________52\n_____________|_______________________________|\n5'-CUG...ACGAA________________AA_________G___CGGAU...AUA-3'\n______________AGGAGUUA____GUGG__UU_GAGUAU_AGC\n______________||:||:||____:|||__||_||:||:_|:|\n______________UCUUCGAU____UACC__AA_CUUAUG_UUG\n3'-UUU...CUCAG________AAGG____GC__U______G___AA-5'\n_____________|_______________________________|\n_____________34______________________________2\n |
27 -- 33 |
26 -- 32 |
-20.5759 kcal/mol |
3.70935 kcal/mol |
8.59196 kcal/mol |
25 52@LB@ | |@LB@5'-CUG...ACGAA AA G CGGAU...AUA-3'@LB@ AGGAGUUA GUGG UU GAGUAU AGC@LB@ ||:||:|| :||| || ||:||: |:|@LB@ UCUUCGAU UACC AA CUUAUG UUG@LB@3'-UUU...CUCAG AAGG GC U G AA-5'@LB@ | |@LB@ 34 2@LB@@LB@@LB@Energy -8.27 kcal/mol@LB@Hybridization Energy -20.5759 kcal/mol@LB@Unfolding Energy - mRNA 3.70935 kcal/mol@LB@Unfolding Energy - sRNA 8.59196 kcal/mol@LB@@LB@Position - mRNA 26 -- 51@LB@Position - sRNA 3 -- 33@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 26 -- 32@LB@ |
21 |
0.0049 |
0.1918 |
ct_531 |
lpxA |
-7.30 |
0.123824 |
16 -- 37 |
17 -- 34 |
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase |
|
_____________15_____________________38\n_____________|______________________|\n5'-UUG...GUAUC___A____AAA_______CA__CUGUU...CGC-3'\n______________CAG_AAGC___AUUCCGU__GC\n______________|||_||||___|||||:|__||\n______________GUC_UUCG___UAAGGUA__CG\n3'-UUU...UCUCA________A_________C___CAAUC...GAA-5'\n_____________|______________________|\n_____________35_____________________16\n |
27 -- 33 |
20 -- 26 |
-14.3796 kcal/mol |
2.10386 kcal/mol |
4.97809 kcal/mol |
15 38@LB@ | |@LB@5'-UUG...GUAUC A AAA CA CUGUU...CGC-3'@LB@ CAG AAGC AUUCCGU GC@LB@ ||| |||| |||||:| ||@LB@ GUC UUCG UAAGGUA CG@LB@3'-UUU...UCUCA A C CAAUC...GAA-5'@LB@ | |@LB@ 35 16@LB@@LB@@LB@Energy -7.30 kcal/mol@LB@Hybridization Energy -14.3796 kcal/mol@LB@Unfolding Energy - mRNA 2.10386 kcal/mol@LB@Unfolding Energy - sRNA 4.97809 kcal/mol@LB@@LB@Position - mRNA 16 -- 37@LB@Position - sRNA 17 -- 34@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 20 -- 26@LB@ |
22 |
0.005311 |
0.1984 |
ct_111 |
groES |
-5.40 |
0.305537 |
269 -- 283 |
17 -- 33 |
co-chaperonin GroES |
|
_____________268_______________284\n_____________|_________________|\n5'-AGC...GAAGA_____________CU__AAGAG...UUC-3'\n______________AGAAGCU__UCCA__GC\n______________|||||||__||||__||\n______________UCUUCGA__AGGU__CG\n3'-UUU...CUCAG_______UA____AC__CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
269 -- 275 |
27 -- 33 |
-15.094 kcal/mol |
4.71335 kcal/mol |
4.97804 kcal/mol |
268 284@LB@ | |@LB@5'-AGC...GAAGA CU AAGAG...UUC-3'@LB@ AGAAGCU UCCA GC@LB@ ||||||| |||| ||@LB@ UCUUCGA AGGU CG@LB@3'-UUU...CUCAG UA AC CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -5.40 kcal/mol@LB@Hybridization Energy -15.094 kcal/mol@LB@Unfolding Energy - mRNA 4.71335 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 269 -- 283@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 27 -- 33@LB@ |
23 |
0.006311 |
0.2093 |
ct_671 |
N/A |
-7.19 |
0.130787 |
265 -- 279 |
17 -- 34 |
|
|
_____________264_________________280\n_____________|___________________|\n5'-CAA...ACGUA________________A__CUAGA...UCC-3'\n______________CAGAGGCU____CAUG_GC\n______________||||:|||____||||_||\n______________GUCUUCGA____GUAC_CG\n3'-UUU...UCUCA________UAAG_______CAAUC...GAA-5'\n_____________|___________________|\n_____________35__________________16\n |
266 -- 272 |
27 -- 33 |
-15.8996 kcal/mol |
3.73088 kcal/mol |
4.97809 kcal/mol |
264 280@LB@ | |@LB@5'-CAA...ACGUA A CUAGA...UCC-3'@LB@ CAGAGGCU CAUG GC@LB@ ||||:||| |||| ||@LB@ GUCUUCGA GUAC CG@LB@3'-UUU...UCUCA UAAG CAAUC...GAA-5'@LB@ | |@LB@ 35 16@LB@@LB@@LB@Energy -7.19 kcal/mol@LB@Hybridization Energy -15.8996 kcal/mol@LB@Unfolding Energy - mRNA 3.73088 kcal/mol@LB@Unfolding Energy - sRNA 4.97809 kcal/mol@LB@@LB@Position - mRNA 265 -- 279@LB@Position - sRNA 17 -- 34@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 27 -- 33@LB@ |
24 |
0.006504 |
0.2093 |
ct_534 |
cutE |
-7.36 |
0.119875 |
40 -- 61 |
34 -- 57 |
apolipoprotein N-acyltransferase |
|
_____________39_______________________62\n_____________|________________________|\n5'-CAG...CAAUU________GAAGUU__________AAUCC...GCG-3'\n______________CCCCUGUG______C_C_AGAGUU\n______________||||||||______|_|_|||||:\n______________GGGGACAC______G_G_UCUCAG\n3'-UUU...GAAGG________AUGUUU_U_A______UCUUC...GAA-5'\n_____________|________________________|\n_____________58_______________________33\n |
41 -- 47 |
50 -- 56 |
-22.0571 kcal/mol |
6.72142 kcal/mol |
7.97509 kcal/mol |
39 62@LB@ | |@LB@5'-CAG...CAAUU GAAGUU AAUCC...GCG-3'@LB@ CCCCUGUG C C AGAGUU@LB@ |||||||| | | |||||:@LB@ GGGGACAC G G UCUCAG@LB@3'-UUU...GAAGG AUGUUU U A UCUUC...GAA-5'@LB@ | |@LB@ 58 33@LB@@LB@@LB@Energy -7.36 kcal/mol@LB@Hybridization Energy -22.0571 kcal/mol@LB@Unfolding Energy - mRNA 6.72142 kcal/mol@LB@Unfolding Energy - sRNA 7.97509 kcal/mol@LB@@LB@Position - mRNA 40 -- 61@LB@Position - sRNA 34 -- 57@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 50 -- 56@LB@ |
25 |
0.00654 |
0.2093 |
ct_672 |
N/A |
-9.75 |
0.032384 |
176 -- 205 |
17 -- 33 |
type III secretion system protein |
|
_____________175____________________________206\n_____________|______________________________|\n5'-AUC...GUAGA_______CAUAUAUAAGGU___C_______AGUUG...CUG-3'\n______________AGAAGCU____________AUU_CCAUGGC\n______________|||||||____________|||_|||||||\n______________UCUUCGA____________UAA_GGUACCG\n3'-UUU...CUCAG______________________________CAAUC...GAA-5'\n_____________|______________________________|\n_____________34_____________________________16\n |
199 -- 205 |
17 -- 23 |
-19.3096 kcal/mol |
4.57941 kcal/mol |
4.97804 kcal/mol |
175 206@LB@ | |@LB@5'-AUC...GUAGA CAUAUAUAAGGU C AGUUG...CUG-3'@LB@ AGAAGCU AUU CCAUGGC@LB@ ||||||| ||| |||||||@LB@ UCUUCGA UAA GGUACCG@LB@3'-UUU...CUCAG CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -9.75 kcal/mol@LB@Hybridization Energy -19.3096 kcal/mol@LB@Unfolding Energy - mRNA 4.57941 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 176 -- 205@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 17 -- 23@LB@ |
26 |
0.006621 |
0.2093 |
ct_267 |
ihfA |
-8.59 |
0.062448 |
193 -- 205 |
17 -- 31 |
DNA-binding protein HU |
|
_____________192_____________206\n_____________|_______________|\n5'-UAA...GCAAC_______________AACGA...AUA-3'\n______________AAGCUA__CCAUGGC\n______________||||||__|||||||\n______________UUCGAU__GGUACCG\n3'-UUU...CAGUC______AA_______CAAUC...GAA-5'\n_____________|_______________|\n_____________32______________16\n |
199 -- 205 |
17 -- 23 |
-17.4173 kcal/mol |
3.97125 kcal/mol |
4.86101 kcal/mol |
192 206@LB@ | |@LB@5'-UAA...GCAAC AACGA...AUA-3'@LB@ AAGCUA CCAUGGC@LB@ |||||| |||||||@LB@ UUCGAU GGUACCG@LB@3'-UUU...CAGUC AA CAAUC...GAA-5'@LB@ | |@LB@ 32 16@LB@@LB@@LB@Energy -8.59 kcal/mol@LB@Hybridization Energy -17.4173 kcal/mol@LB@Unfolding Energy - mRNA 3.97125 kcal/mol@LB@Unfolding Energy - sRNA 4.86101 kcal/mol@LB@@LB@Position - mRNA 193 -- 205@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 17 -- 23@LB@ |
27 |
0.007389 |
0.2199 |
ct_855 |
fumC |
-7.16 |
0.132975 |
201 -- 207 |
82 -- 88 |
fumarate hydratase |
|
_____________200_____208\n_____________|_______|\n5'-AUA...AGCAU_______AAGAG...GUA-3'\n______________AUGCGGC\n______________||:||||\n______________UAUGCCG\n3'-UUU...GCCUC_______AUUGA...GAA-5'\n_____________|_______|\n_____________89______81\n |
201 -- 207 |
82 -- 88 |
-10.3037 kcal/mol |
2.04792 kcal/mol |
1.09753 kcal/mol |
200 208@LB@ | |@LB@5'-AUA...AGCAU AAGAG...GUA-3'@LB@ AUGCGGC@LB@ ||:||||@LB@ UAUGCCG@LB@3'-UUU...GCCUC AUUGA...GAA-5'@LB@ | |@LB@ 89 81@LB@@LB@@LB@Energy -7.16 kcal/mol@LB@Hybridization Energy -10.3037 kcal/mol@LB@Unfolding Energy - mRNA 2.04792 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 201 -- 207@LB@Position - sRNA 82 -- 88@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 82 -- 88@LB@ |
28 |
0.007489 |
0.2199 |
ct_755 |
groEL_3 |
-5.45 |
0.299165 |
283 -- 296 |
17 -- 33 |
chaperonin GroEL |
|
_____________282_______________297\n_____________|_________________|\n5'-CAC...AGUAA_________________CCCG-3'\n______________AGGGGU___UUUAUGGC\n______________||::|:___|::|||||\n______________UCUUCG___AGGUACCG\n3'-UUU...CUCAG______AUA________CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
290 -- 296 |
17 -- 23 |
-13.7025 kcal/mol |
3.27337 kcal/mol |
4.97804 kcal/mol |
282 297@LB@ | |@LB@5'-CAC...AGUAA CCCG-3'@LB@ AGGGGU UUUAUGGC@LB@ ||::|: |::|||||@LB@ UCUUCG AGGUACCG@LB@3'-UUU...CUCAG AUA CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -5.45 kcal/mol@LB@Hybridization Energy -13.7025 kcal/mol@LB@Unfolding Energy - mRNA 3.27337 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 283 -- 296@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 17 -- 23@LB@ |
29 |
0.008327 |
0.236 |
ct_722 |
pgm |
-9.49 |
0.037543 |
218 -- 230 |
17 -- 29 |
2 3-bisphosphoglycerate-dependent phosphoglycerate mutase |
|
_____________217___________231\n_____________|_____________|\n5'-CUU...AUCUU____CG_______CAAUC...UUC-3'\n______________GCUA__CCAUGGC\n______________||||__|||||||\n______________CGAU__GGUACCG\n3'-UUU...GUCUU____AA_______CAAUC...GAA-5'\n_____________|_____________|\n_____________30____________16\n |
224 -- 230 |
17 -- 23 |
-17.8075 kcal/mol |
3.64492 kcal/mol |
4.66832 kcal/mol |
217 231@LB@ | |@LB@5'-CUU...AUCUU CG CAAUC...UUC-3'@LB@ GCUA CCAUGGC@LB@ |||| |||||||@LB@ CGAU GGUACCG@LB@3'-UUU...GUCUU AA CAAUC...GAA-5'@LB@ | |@LB@ 30 16@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -17.8075 kcal/mol@LB@Unfolding Energy - mRNA 3.64492 kcal/mol@LB@Unfolding Energy - sRNA 4.66832 kcal/mol@LB@@LB@Position - mRNA 218 -- 230@LB@Position - sRNA 17 -- 29@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 17 -- 23@LB@ |
30 |
0.009028 |
0.2474 |
ct_455 |
murA |
-8.03 |
0.084305 |
255 -- 264 |
26 -- 35 |
UDP-N-acetylglucosamine 1-carboxyvinyltransferase |
|
_____________254________265\n_____________|__________|\n5'-AAA...GCGUG__________AAAAU...UAC-3'\n______________UCAGGAGCUA\n______________||||:|||||\n______________AGUCUUCGAU\n3'-UUU...AUCUC__________AAGGU...GAA-5'\n_____________|__________|\n_____________36_________25\n |
258 -- 264 |
26 -- 32 |
-13.9898 kcal/mol |
1.25877 kcal/mol |
4.69985 kcal/mol |
254 265@LB@ | |@LB@5'-AAA...GCGUG AAAAU...UAC-3'@LB@ UCAGGAGCUA@LB@ ||||:|||||@LB@ AGUCUUCGAU@LB@3'-UUU...AUCUC AAGGU...GAA-5'@LB@ | |@LB@ 36 25@LB@@LB@@LB@Energy -8.03 kcal/mol@LB@Hybridization Energy -13.9898 kcal/mol@LB@Unfolding Energy - mRNA 1.25877 kcal/mol@LB@Unfolding Energy - sRNA 4.69985 kcal/mol@LB@@LB@Position - mRNA 255 -- 264@LB@Position - sRNA 26 -- 35@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 26 -- 32@LB@ |
31 |
0.009434 |
0.2502 |
ct_824 |
N/A |
-6.02 |
0.231369 |
20 -- 32 |
21 -- 33 |
Zn-dependent peptidase |
|
_____________19____________33\n_____________|_____________|\n5'-GUC...UUUUA________G____GUAUG...CCG-3'\n______________GGAAGCUA_UCUA\n______________:|||||||_||:|\n______________UCUUCGAU_AGGU\n3'-UUU...CUCAG________A____ACCGC...GAA-5'\n_____________|_____________|\n_____________34____________20\n |
21 -- 27 |
26 -- 32 |
-13.8347 kcal/mol |
3.08274 kcal/mol |
4.73034 kcal/mol |
19 33@LB@ | |@LB@5'-GUC...UUUUA G GUAUG...CCG-3'@LB@ GGAAGCUA UCUA@LB@ :||||||| ||:|@LB@ UCUUCGAU AGGU@LB@3'-UUU...CUCAG A ACCGC...GAA-5'@LB@ | |@LB@ 34 20@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -13.8347 kcal/mol@LB@Unfolding Energy - mRNA 3.08274 kcal/mol@LB@Unfolding Energy - sRNA 4.73034 kcal/mol@LB@@LB@Position - mRNA 20 -- 32@LB@Position - sRNA 21 -- 33@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 26 -- 32@LB@ |
32 |
0.009822 |
0.2518 |
ct_649 |
ygfA |
-6.64 |
0.172247 |
22 -- 28 |
80 -- 86 |
5-formyltetrahydrofolate cyclo-ligase |
|
_____________21______29\n_____________|_______|\n5'-UAC...AAGUG_______CCGAG...AGC-3'\n______________AUGGCUA\n______________|:|||||\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
22 -- 28 |
80 -- 86 |
-8.81528 kcal/mol |
1.11082 kcal/mol |
1.06449 kcal/mol |
21 29@LB@ | |@LB@5'-UAC...AAGUG CCGAG...AGC-3'@LB@ AUGGCUA@LB@ |:|||||@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -6.64 kcal/mol@LB@Hybridization Energy -8.81528 kcal/mol@LB@Unfolding Energy - mRNA 1.11082 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 22 -- 28@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 80 -- 86@LB@ |
33 |
0.01042 |
0.2518 |
ct_780 |
N/A |
-7.85 |
0.092931 |
30 -- 50 |
15 -- 34 |
|
|
_____________29____________________51\n_____________|_____________________|\n5'-UGU...AAAAA___C____GAA_G________GUCAA...UCA-3'\n______________CAG_AAGU___U_CAUGGCGU\n______________|||_|||:___|_||||||||\n______________GUC_UUCG___A_GUACCGCA\n3'-UUU...UCUCA________AUA_G________AUCUU...GAA-5'\n_____________|_____________________|\n_____________35____________________14\n |
44 -- 50 |
15 -- 21 |
-20.7959 kcal/mol |
4.71518 kcal/mol |
8.23265 kcal/mol |
29 51@LB@ | |@LB@5'-UGU...AAAAA C GAA G GUCAA...UCA-3'@LB@ CAG AAGU U CAUGGCGU@LB@ ||| |||: | ||||||||@LB@ GUC UUCG A GUACCGCA@LB@3'-UUU...UCUCA AUA G AUCUU...GAA-5'@LB@ | |@LB@ 35 14@LB@@LB@@LB@Energy -7.85 kcal/mol@LB@Hybridization Energy -20.7959 kcal/mol@LB@Unfolding Energy - mRNA 4.71518 kcal/mol@LB@Unfolding Energy - sRNA 8.23265 kcal/mol@LB@@LB@Position - mRNA 30 -- 50@LB@Position - sRNA 15 -- 34@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 15 -- 21@LB@ |
34 |
0.01043 |
0.2518 |
ct_642 |
N/A |
-9.37 |
0.040224 |
239 -- 246 |
53 -- 60 |
|
|
_____________238______247\n_____________|________|\n5'-AGG...UCUUC________CUUCG...CUG-3'\n______________UCCCCCCU\n______________||||||||\n______________AGGGGGGA\n3'-UUU...ACUGA________CACAU...GAA-5'\n_____________|________|\n_____________61_______52\n |
240 -- 246 |
53 -- 59 |
-15.9954 kcal/mol |
0.170944 kcal/mol |
6.45136 kcal/mol |
238 247@LB@ | |@LB@5'-AGG...UCUUC CUUCG...CUG-3'@LB@ UCCCCCCU@LB@ ||||||||@LB@ AGGGGGGA@LB@3'-UUU...ACUGA CACAU...GAA-5'@LB@ | |@LB@ 61 52@LB@@LB@@LB@Energy -9.37 kcal/mol@LB@Hybridization Energy -15.9954 kcal/mol@LB@Unfolding Energy - mRNA 0.170944 kcal/mol@LB@Unfolding Energy - sRNA 6.45136 kcal/mol@LB@@LB@Position - mRNA 239 -- 246@LB@Position - sRNA 53 -- 60@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 53 -- 59@LB@ |
35 |
0.01072 |
0.2518 |
ct_483 |
N/A |
-8.14 |
0.079674 |
97 -- 146 |
5 -- 57 |
|
|
_____________96______________________________________________________147\n_____________|_______________________________________________________|\n5'-UAG...GUCUU____GAC_______G_GAAAU_____UC____________AAAAAAA________AGGUA...GCG-3'\n______________CUCC____UACAGA_A_____GAGUC_____CUAUUCCAU________AAUACCA\n______________|:||____||||:|_|_____|||||_____|||||||||________|||||||\n______________GGGG____AUGUUU_U_____CUCAG_____GAUAAGGUA________UUAUGGU\n3'-UUU...GAAGG____ACAC______G_GAU_______UCUUC_________CCGCAAUC_______UGAA-5'\n_____________|_______________________________________________________|\n_____________58______________________________________________________4\n |
140 -- 146 |
5 -- 11 |
-33.404 kcal/mol |
8.71732 kcal/mol |
16.5501 kcal/mol |
96 147@LB@ | |@LB@5'-UAG...GUCUU GAC G GAAAU UC AAAAAAA AGGUA...GCG-3'@LB@ CUCC UACAGA A GAGUC CUAUUCCAU AAUACCA@LB@ |:|| ||||:| | ||||| ||||||||| |||||||@LB@ GGGG AUGUUU U CUCAG GAUAAGGUA UUAUGGU@LB@3'-UUU...GAAGG ACAC G GAU UCUUC CCGCAAUC UGAA-5'@LB@ | |@LB@ 58 4@LB@@LB@@LB@Energy -8.14 kcal/mol@LB@Hybridization Energy -33.404 kcal/mol@LB@Unfolding Energy - mRNA 8.71732 kcal/mol@LB@Unfolding Energy - sRNA 16.5501 kcal/mol@LB@@LB@Position - mRNA 97 -- 146@LB@Position - sRNA 5 -- 57@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 5 -- 11@LB@ |
36 |
0.01184 |
0.2704 |
ct_030 |
gmk |
-11.03 |
0.015227 |
49 -- 70 |
6 -- 34 |
guanylate kinase |
|
_____________48____________________________71\n_____________|_____________________________|\n5'-AUA...UGAUG_____________________________CCGAG...CAC-3'\n______________CGGAAGCU___UCAUG____UAGAGUACC\n______________|:||||||___:||||____||||:||||\n______________GUCUUCGA___GGUAC____AUCUUAUGG\n3'-UUU...UCUCA________UAA_____CGCA_________UUGAA-5'\n_____________|_____________________________|\n_____________35____________________________5\n |
64 -- 70 |
6 -- 12 |
-24.3478 kcal/mol |
4.72233 kcal/mol |
8.59183 kcal/mol |
48 71@LB@ | |@LB@5'-AUA...UGAUG CCGAG...CAC-3'@LB@ CGGAAGCU UCAUG UAGAGUACC@LB@ |:|||||| :|||| ||||:||||@LB@ GUCUUCGA GGUAC AUCUUAUGG@LB@3'-UUU...UCUCA UAA CGCA UUGAA-5'@LB@ | |@LB@ 35 5@LB@@LB@@LB@Energy -11.03 kcal/mol@LB@Hybridization Energy -24.3478 kcal/mol@LB@Unfolding Energy - mRNA 4.72233 kcal/mol@LB@Unfolding Energy - sRNA 8.59183 kcal/mol@LB@@LB@Position - mRNA 49 -- 70@LB@Position - sRNA 6 -- 34@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 6 -- 12@LB@ |
37 |
0.01294 |
0.2859 |
ct_591 |
sdhB |
-7.06 |
0.139804 |
161 -- 176 |
18 -- 34 |
succinate dehydrogenase iron sulfur subunit |
|
_____________160_______________177\n_____________|_________________|\n5'-AAA...AUUUA_____________UG__AAAUA...GGG-3'\n______________UAGAGGC_GUUCC__GG\n______________:|||:||_:||||__||\n______________GUCUUCG_UAAGG__CC\n3'-UUU...UCUCA_______A_____UA__GCAAU...GAA-5'\n_____________|_________________|\n_____________35________________17\n |
161 -- 167 |
28 -- 34 |
-17.8156 kcal/mol |
5.77845 kcal/mol |
4.97803 kcal/mol |
160 177@LB@ | |@LB@5'-AAA...AUUUA UG AAAUA...GGG-3'@LB@ UAGAGGC GUUCC GG@LB@ :|||:|| :|||| ||@LB@ GUCUUCG UAAGG CC@LB@3'-UUU...UCUCA A UA GCAAU...GAA-5'@LB@ | |@LB@ 35 17@LB@@LB@@LB@Energy -7.06 kcal/mol@LB@Hybridization Energy -17.8156 kcal/mol@LB@Unfolding Energy - mRNA 5.77845 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 161 -- 176@LB@Position - sRNA 18 -- 34@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 28 -- 34@LB@ |
38 |
0.01345 |
0.2859 |
ct_769 |
ybeB |
-11.98 |
0.008536 |
76 -- 102 |
17 -- 43 |
ribosome silencing factor |
|
_____________75___________________________103\n_____________|____________________________|\n5'-CUU...GAUCU________GAA_________________AAAGA...CCC-3'\n______________CGCUAGAG___AGAGGCUAUUUU_UGGU\n______________|:||||||___|||:||||||::_|||:\n______________GUGAUCUC___UCUUCGAUAAGG_ACCG\n3'-UUU...UGUUU________AG_____________U____CAAUC...GAA-5'\n_____________|____________________________|\n_____________44___________________________16\n |
91 -- 97 |
23 -- 29 |
-31.1732 kcal/mol |
6.53125 kcal/mol |
12.6613 kcal/mol |
75 103@LB@ | |@LB@5'-CUU...GAUCU GAA AAAGA...CCC-3'@LB@ CGCUAGAG AGAGGCUAUUUU UGGU@LB@ |:|||||| |||:||||||:: |||:@LB@ GUGAUCUC UCUUCGAUAAGG ACCG@LB@3'-UUU...UGUUU AG U CAAUC...GAA-5'@LB@ | |@LB@ 44 16@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -31.1732 kcal/mol@LB@Unfolding Energy - mRNA 6.53125 kcal/mol@LB@Unfolding Energy - sRNA 12.6613 kcal/mol@LB@@LB@Position - mRNA 76 -- 102@LB@Position - sRNA 17 -- 43@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 23 -- 29@LB@ |
39 |
0.01357 |
0.2859 |
ct_401 |
gltT |
-7.80 |
0.095127 |
36 -- 47 |
44 -- 55 |
sodium:dicarboxylate symport protein |
|
_____________35___________48\n_____________|____________|\n5'-UGU...GGUAU____________AAAGG...AUA-3'\n______________CCUGUGUACAGA\n______________||||||||||:|\n______________GGACACAUGUUU\n3'-UUU...AGGGG____________GUGAU...GAA-5'\n_____________|____________|\n_____________56___________43\n |
41 -- 47 |
44 -- 50 |
-17.8988 kcal/mol |
2.58215 kcal/mol |
7.51272 kcal/mol |
35 48@LB@ | |@LB@5'-UGU...GGUAU AAAGG...AUA-3'@LB@ CCUGUGUACAGA@LB@ ||||||||||:|@LB@ GGACACAUGUUU@LB@3'-UUU...AGGGG GUGAU...GAA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -7.80 kcal/mol@LB@Hybridization Energy -17.8988 kcal/mol@LB@Unfolding Energy - mRNA 2.58215 kcal/mol@LB@Unfolding Energy - sRNA 7.51272 kcal/mol@LB@@LB@Position - mRNA 36 -- 47@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 44 -- 50@LB@ |
40 |
0.01393 |
0.2859 |
ct_695 |
N/A |
-4.73 |
0.403172 |
160 -- 166 |
82 -- 88 |
|
|
_____________159_____167\n_____________|_______|\n5'-AUU...AAGGU_______GUUCG...AGG-3'\n______________AUGCGGU\n______________||:|||:\n______________UAUGCCG\n3'-UUU...GCCUC_______AUUGA...GAA-5'\n_____________|_______|\n_____________89______81\n |
160 -- 166 |
82 -- 88 |
-8.16543 kcal/mol |
2.33498 kcal/mol |
1.09753 kcal/mol |
159 167@LB@ | |@LB@5'-AUU...AAGGU GUUCG...AGG-3'@LB@ AUGCGGU@LB@ ||:|||:@LB@ UAUGCCG@LB@3'-UUU...GCCUC AUUGA...GAA-5'@LB@ | |@LB@ 89 81@LB@@LB@@LB@Energy -4.73 kcal/mol@LB@Hybridization Energy -8.16543 kcal/mol@LB@Unfolding Energy - mRNA 2.33498 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 160 -- 166@LB@Position - sRNA 82 -- 88@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 82 -- 88@LB@ |
41 |
0.01426 |
0.2859 |
ct_458 |
YhhY |
-4.46 |
0.446972 |
238 -- 245 |
81 -- 88 |
acetyltransferase |
|
_____________237______246\n_____________|________|\n5'-UUA...UCGGU________CCUGA...GAG-3'\n______________AUACGGUU\n______________||||||:|\n______________UAUGCCGA\n3'-UUU...GCCUC________UUGAG...GAA-5'\n_____________|________|\n_____________89_______80\n |
239 -- 245 |
81 -- 87 |
-8.66821 kcal/mol |
3.10635 kcal/mol |
1.09753 kcal/mol |
237 246@LB@ | |@LB@5'-UUA...UCGGU CCUGA...GAG-3'@LB@ AUACGGUU@LB@ ||||||:|@LB@ UAUGCCGA@LB@3'-UUU...GCCUC UUGAG...GAA-5'@LB@ | |@LB@ 89 80@LB@@LB@@LB@Energy -4.46 kcal/mol@LB@Hybridization Energy -8.66821 kcal/mol@LB@Unfolding Energy - mRNA 3.10635 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 238 -- 245@LB@Position - sRNA 81 -- 88@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 81 -- 87@LB@ |
42 |
0.01617 |
0.29 |
ct_610 |
N/A |
-8.69 |
0.058803 |
15 -- 22 |
80 -- 87 |
virulence protein CADD |
|
_____________14_______23\n_____________|________|\n5'-GAU...GCAGU________UUGUU...GGG-3'\n______________UGCGGCUG\n______________|:|||||:\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
16 -- 22 |
80 -- 86 |
-11.8172 kcal/mol |
2.02516 kcal/mol |
1.09752 kcal/mol |
14 23@LB@ | |@LB@5'-GAU...GCAGU UUGUU...GGG-3'@LB@ UGCGGCUG@LB@ |:|||||:@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -8.69 kcal/mol@LB@Hybridization Energy -11.8172 kcal/mol@LB@Unfolding Energy - mRNA 2.02516 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 15 -- 22@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 80 -- 86@LB@ |
43 |
0.01649 |
0.29 |
ct_590 |
N/A |
-9.68 |
0.033714 |
159 -- 170 |
17 -- 28 |
|
|
_____________158__________171\n_____________|____________|\n5'-AGU...CAAUU____________AAAGG...UCA-3'\n______________UUAUUCCAUGGU\n______________:||||||||||:\n______________GAUAAGGUACCG\n3'-UUU...UCUUC____________CAAUC...GAA-5'\n_____________|____________|\n_____________29___________16\n |
164 -- 170 |
17 -- 23 |
-16.2126 kcal/mol |
1.90936 kcal/mol |
4.62088 kcal/mol |
158 171@LB@ | |@LB@5'-AGU...CAAUU AAAGG...UCA-3'@LB@ UUAUUCCAUGGU@LB@ :||||||||||:@LB@ GAUAAGGUACCG@LB@3'-UUU...UCUUC CAAUC...GAA-5'@LB@ | |@LB@ 29 16@LB@@LB@@LB@Energy -9.68 kcal/mol@LB@Hybridization Energy -16.2126 kcal/mol@LB@Unfolding Energy - mRNA 1.90936 kcal/mol@LB@Unfolding Energy - sRNA 4.62088 kcal/mol@LB@@LB@Position - mRNA 159 -- 170@LB@Position - sRNA 17 -- 28@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 17 -- 23@LB@ |
44 |
0.01666 |
0.29 |
ct_438 |
rs7 |
-6.33 |
0.200160 |
214 -- 223 |
79 -- 88 |
30S ribosomal protein S7 |
|
_____________213________224\n_____________|__________|\n5'-GCA...ACGAC__________GAAGA...ACG-3'\n______________AUGCGGCUGA\n______________||:|||||:|\n______________UAUGCCGAUU\n3'-UUU...GCCUC__________GAGGU...GAA-5'\n_____________|__________|\n_____________89_________78\n |
217 -- 223 |
79 -- 85 |
-13.0034 kcal/mol |
5.57631 kcal/mol |
1.09753 kcal/mol |
213 224@LB@ | |@LB@5'-GCA...ACGAC GAAGA...ACG-3'@LB@ AUGCGGCUGA@LB@ ||:|||||:|@LB@ UAUGCCGAUU@LB@3'-UUU...GCCUC GAGGU...GAA-5'@LB@ | |@LB@ 89 78@LB@@LB@@LB@Energy -6.33 kcal/mol@LB@Hybridization Energy -13.0034 kcal/mol@LB@Unfolding Energy - mRNA 5.57631 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 214 -- 223@LB@Position - sRNA 79 -- 88@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 79 -- 85@LB@ |
45 |
0.01671 |
0.29 |
ct_469 |
N/A |
-9.81 |
0.031394 |
4 -- 20 |
17 -- 35 |
|
|
_____________3___________________21\n_____________|___________________|\n________5'-AUU___________________AACCU...UCU-3'\n______________UCAGAAGCU_UUUC_UGGU\n______________|||||||||_||:|_|||:\n______________AGUCUUCGA_AAGG_ACCG\n3'-UUU...AUCUC_________U____U____CAAUC...GAA-5'\n_____________|___________________|\n_____________36__________________16\n |
6 -- 12 |
27 -- 33 |
-19.4129 kcal/mol |
4.62874 kcal/mol |
4.9781 kcal/mol |
3 21@LB@ | |@LB@ 5'-AUU AACCU...UCU-3'@LB@ UCAGAAGCU UUUC UGGU@LB@ ||||||||| ||:| |||:@LB@ AGUCUUCGA AAGG ACCG@LB@3'-UUU...AUCUC U U CAAUC...GAA-5'@LB@ | |@LB@ 36 16@LB@@LB@@LB@Energy -9.81 kcal/mol@LB@Hybridization Energy -19.4129 kcal/mol@LB@Unfolding Energy - mRNA 4.62874 kcal/mol@LB@Unfolding Energy - sRNA 4.9781 kcal/mol@LB@@LB@Position - mRNA 4 -- 20@LB@Position - sRNA 17 -- 35@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 27 -- 33@LB@ |
46 |
0.01681 |
0.29 |
ct_425 |
N/A |
-8.97 |
0.050526 |
259 -- 284 |
2 -- 23 |
|
|
_____________258_________________________285\n_____________|___________________________|\n5'-CUU...UUCUA__________UC_____UUCU______AAUUU...AAG-3'\n______________CC_UGGCGUU__GAAUA____UCAGCU\n______________||_|||||||__|||||____:||:||\n______________GG_ACCGCAA__CUUAU____GGUUGA\n3'-UUU...GAUAA__U_______U________________A-5'\n_____________|___________________________|\n_____________24__________________________1\n |
261 -- 267 |
14 -- 20 |
-21.0816 kcal/mol |
4.01638 kcal/mol |
8.09761 kcal/mol |
258 285@LB@ | |@LB@5'-CUU...UUCUA UC UUCU AAUUU...AAG-3'@LB@ CC UGGCGUU GAAUA UCAGCU@LB@ || ||||||| ||||| :||:||@LB@ GG ACCGCAA CUUAU GGUUGA@LB@3'-UUU...GAUAA U U A-5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -8.97 kcal/mol@LB@Hybridization Energy -21.0816 kcal/mol@LB@Unfolding Energy - mRNA 4.01638 kcal/mol@LB@Unfolding Energy - sRNA 8.09761 kcal/mol@LB@@LB@Position - mRNA 259 -- 284@LB@Position - sRNA 2 -- 23@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 14 -- 20@LB@ |
47 |
0.01707 |
0.29 |
ct_577 |
N/A |
-4.79 |
0.394783 |
124 -- 141 |
41 -- 59 |
|
|
_____________123_________________142\n_____________|___________________|\n5'-GAU...CAAGC_______CCUAA_______AAAAG...AAU-3'\n______________CUCCUCU______AAACAC\n______________|:||:||______||||||\n______________GGGGGGA______UUUGUG\n3'-UUU...CUGAA_______CACAUG______AUCUC...GAA-5'\n_____________|___________________|\n_____________60__________________40\n |
124 -- 130 |
53 -- 59 |
-14.9438 kcal/mol |
1.33474 kcal/mol |
8.82318 kcal/mol |
123 142@LB@ | |@LB@5'-GAU...CAAGC CCUAA AAAAG...AAU-3'@LB@ CUCCUCU AAACAC@LB@ |:||:|| ||||||@LB@ GGGGGGA UUUGUG@LB@3'-UUU...CUGAA CACAUG AUCUC...GAA-5'@LB@ | |@LB@ 60 40@LB@@LB@@LB@Energy -4.79 kcal/mol@LB@Hybridization Energy -14.9438 kcal/mol@LB@Unfolding Energy - mRNA 1.33474 kcal/mol@LB@Unfolding Energy - sRNA 8.82318 kcal/mol@LB@@LB@Position - mRNA 124 -- 141@LB@Position - sRNA 41 -- 59@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 53 -- 59@LB@ |
48 |
0.01795 |
0.29 |
ct_863 |
N/A |
-9.34 |
0.040980 |
222 -- 242 |
40 -- 60 |
|
|
_____________221___________________243\n_____________|_____________________|\n5'-AAU...CCCUU______G_ACCG_________UCUCU...UUC-3'\n______________UCCUCC_U____ACAAACGCU\n______________|||:||_|____||||||:||\n______________AGGGGG_A____UGUUUGUGA\n3'-UUU...ACUGA______G_CACA_________UCUCA...GAA-5'\n_____________|_____________________|\n_____________61____________________39\n |
235 -- 241 |
41 -- 47 |
-20.8327 kcal/mol |
1.69613 kcal/mol |
9.79654 kcal/mol |
221 243@LB@ | |@LB@5'-AAU...CCCUU G ACCG UCUCU...UUC-3'@LB@ UCCUCC U ACAAACGCU@LB@ |||:|| | ||||||:||@LB@ AGGGGG A UGUUUGUGA@LB@3'-UUU...ACUGA G CACA UCUCA...GAA-5'@LB@ | |@LB@ 61 39@LB@@LB@@LB@Energy -9.34 kcal/mol@LB@Hybridization Energy -20.8327 kcal/mol@LB@Unfolding Energy - mRNA 1.69613 kcal/mol@LB@Unfolding Energy - sRNA 9.79654 kcal/mol@LB@@LB@Position - mRNA 222 -- 242@LB@Position - sRNA 40 -- 60@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 41 -- 47@LB@ |
49 |
0.01821 |
0.29 |
ct_733 |
N/A |
-8.44 |
0.067485 |
96 -- 102 |
80 -- 86 |
|
|
_____________95______103\n_____________|_______|\n5'-AUG...UGCCA_______UUGAU...CUA-3'\n______________GCGGCUA\n______________:||||||\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
96 -- 102 |
80 -- 86 |
-11.4095 kcal/mol |
1.90152 kcal/mol |
1.06449 kcal/mol |
95 103@LB@ | |@LB@5'-AUG...UGCCA UUGAU...CUA-3'@LB@ GCGGCUA@LB@ :||||||@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -8.44 kcal/mol@LB@Hybridization Energy -11.4095 kcal/mol@LB@Unfolding Energy - mRNA 1.90152 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 96 -- 102@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 80 -- 86@LB@ |
50 |
0.01829 |
0.29 |
ct_588 |
rbsU |
-10.49 |
0.021035 |
31 -- 46 |
21 -- 34 |
serine phosphatase RsbU |
|
_____________30_______________47\n_____________|________________|\n5'-GUC...GGGUC________CU______AGAUU...UCC-3'\n______________CAGAAGCU__AUUCCA\n______________||||||||__||||||\n______________GUCUUCGA__UAAGGU\n3'-UUU...UCUCA________________ACCGC...GAA-5'\n_____________|________________|\n_____________35_______________20\n |
32 -- 38 |
27 -- 33 |
-17.905 kcal/mol |
2.68182 kcal/mol |
4.73132 kcal/mol |
30 47@LB@ | |@LB@5'-GUC...GGGUC CU AGAUU...UCC-3'@LB@ CAGAAGCU AUUCCA@LB@ |||||||| ||||||@LB@ GUCUUCGA UAAGGU@LB@3'-UUU...UCUCA ACCGC...GAA-5'@LB@ | |@LB@ 35 20@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -17.905 kcal/mol@LB@Unfolding Energy - mRNA 2.68182 kcal/mol@LB@Unfolding Energy - sRNA 4.73132 kcal/mol@LB@@LB@Position - mRNA 31 -- 46@LB@Position - sRNA 21 -- 34@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 27 -- 33@LB@ |
51 |
0.01855 |
0.29 |
ct_758 |
murD |
-8.46 |
0.066834 |
21 -- 39 |
25 -- 51 |
UDP-N-acetylmuramoylalanine--D-glutamate ligase |
|
_____________20__________________________40\n_____________|___________________________|\n5'-CUG...GUGAU___________________________AAAUU...ACA-3'\n______________UGUACA________AGUCGGAAGUUAU\n______________||||||________||||:||||:|||\n______________ACAUGU________UCAGUCUUCGAUA\n3'-UUU...GGGAC______UUGUGAUC_____________AGGUA...GAA-5'\n_____________|___________________________|\n_____________52__________________________24\n |
33 -- 39 |
25 -- 31 |
-21.2974 kcal/mol |
1.17475 kcal/mol |
11.6617 kcal/mol |
20 40@LB@ | |@LB@5'-CUG...GUGAU AAAUU...ACA-3'@LB@ UGUACA AGUCGGAAGUUAU@LB@ |||||| ||||:||||:|||@LB@ ACAUGU UCAGUCUUCGAUA@LB@3'-UUU...GGGAC UUGUGAUC AGGUA...GAA-5'@LB@ | |@LB@ 52 24@LB@@LB@@LB@Energy -8.46 kcal/mol@LB@Hybridization Energy -21.2974 kcal/mol@LB@Unfolding Energy - mRNA 1.17475 kcal/mol@LB@Unfolding Energy - sRNA 11.6617 kcal/mol@LB@@LB@Position - mRNA 21 -- 39@LB@Position - sRNA 25 -- 51@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 25 -- 31@LB@ |
52 |
0.01886 |
0.29 |
ct_784 |
rnpA |
-5.05 |
0.354130 |
114 -- 120 |
80 -- 86 |
ribonuclease P protein component |
|
_____________113_____121\n_____________|_______|\n5'-UCU...CUCGC_______CAAAA...UGA-3'\n______________AUGGCUA\n______________|:|||||\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
114 -- 120 |
80 -- 86 |
-8.53572 kcal/mol |
2.4168 kcal/mol |
1.06449 kcal/mol |
113 121@LB@ | |@LB@5'-UCU...CUCGC CAAAA...UGA-3'@LB@ AUGGCUA@LB@ |:|||||@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -5.05 kcal/mol@LB@Hybridization Energy -8.53572 kcal/mol@LB@Unfolding Energy - mRNA 2.4168 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 114 -- 120@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 80 -- 86@LB@ |
53 |
0.01942 |
0.29 |
ct_580 |
N/A |
-10.14 |
0.025883 |
244 -- 280 |
22 -- 57 |
S-adenosylmethionine/S-adenosylhomocysteine transporter |
|
_____________243___________________________________281\n_____________|_____________________________________|\n5'-GUU...ACAAA___G_____U_____C___UU__GACAU_________CUUAA...CUU-3'\n______________CCU_UGUGU_UAAAC_CUG__GU_____GGCUAUUUU\n______________||:_|||||_:||||_||:__||_____:||||||::\n______________GGG_ACACA_GUUUG_GAU__CA_____UCGAUAAGG\n3'-UUU...GAAGG___G_____U_____U___CU__GUCU__________UACCG...GAA-5'\n_____________|_____________________________________|\n_____________58____________________________________21\n |
273 -- 279 |
23 -- 29 |
-28.6785 kcal/mol |
5.85369 kcal/mol |
12.6861 kcal/mol |
243 281@LB@ | |@LB@5'-GUU...ACAAA G U C UU GACAU CUUAA...CUU-3'@LB@ CCU UGUGU UAAAC CUG GU GGCUAUUUU@LB@ ||: ||||| :|||| ||: || :||||||::@LB@ GGG ACACA GUUUG GAU CA UCGAUAAGG@LB@3'-UUU...GAAGG G U U CU GUCU UACCG...GAA-5'@LB@ | |@LB@ 58 21@LB@@LB@@LB@Energy -10.14 kcal/mol@LB@Hybridization Energy -28.6785 kcal/mol@LB@Unfolding Energy - mRNA 5.85369 kcal/mol@LB@Unfolding Energy - sRNA 12.6861 kcal/mol@LB@@LB@Position - mRNA 244 -- 280@LB@Position - sRNA 22 -- 57@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 23 -- 29@LB@ |
54 |
0.02089 |
0.29 |
ct_119 |
incA |
-7.14 |
0.134009 |
237 -- 243 |
52 -- 58 |
inclusion membrane protein A |
|
_____________236_____244\n_____________|_______|\n5'-UCC...CAUCU_______CACCU...AGA-3'\n______________CCCCCUG\n______________|||||||\n______________GGGGGAC\n3'-UUU...UGAAG_______ACAUG...GAA-5'\n_____________|_______|\n_____________59______51\n |
237 -- 243 |
52 -- 58 |
-14.4133 kcal/mol |
0.279731 kcal/mol |
6.99083 kcal/mol |
236 244@LB@ | |@LB@5'-UCC...CAUCU CACCU...AGA-3'@LB@ CCCCCUG@LB@ |||||||@LB@ GGGGGAC@LB@3'-UUU...UGAAG ACAUG...GAA-5'@LB@ | |@LB@ 59 51@LB@@LB@@LB@Energy -7.14 kcal/mol@LB@Hybridization Energy -14.4133 kcal/mol@LB@Unfolding Energy - mRNA 0.279731 kcal/mol@LB@Unfolding Energy - sRNA 6.99083 kcal/mol@LB@@LB@Position - mRNA 237 -- 243@LB@Position - sRNA 52 -- 58@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 52 -- 58@LB@ |
55 |
0.02093 |
0.29 |
ct_785 |
rl34 |
-4.69 |
0.410747 |
264 -- 270 |
80 -- 86 |
50S ribosomal protein L34 |
|
_____________263_____271\n_____________|_______|\n5'-ACA...CUCGC_______CAAAA...GCC-3'\n______________AUGGCUA\n______________|:|||||\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
264 -- 270 |
80 -- 86 |
-8.67787 kcal/mol |
2.92801 kcal/mol |
1.06449 kcal/mol |
263 271@LB@ | |@LB@5'-ACA...CUCGC CAAAA...GCC-3'@LB@ AUGGCUA@LB@ |:|||||@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -4.69 kcal/mol@LB@Hybridization Energy -8.67787 kcal/mol@LB@Unfolding Energy - mRNA 2.92801 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 264 -- 270@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 80 -- 86@LB@ |
56 |
0.02215 |
0.29 |
ct_104 |
fabI |
-6.34 |
0.199539 |
263 -- 271 |
80 -- 88 |
enoyl-(acyl carrier protein) reductase |
|
_____________262_______272\n_____________|_________|\n5'-UUU...AACGG_________GGGCA...CAG-3'\n______________GUAUGGCUG\n______________:||:||||:\n______________UAUGCCGAU\n3'-UUU...GCCUC_________UGAGG...GAA-5'\n_____________|_________|\n_____________89________79\n |
265 -- 271 |
80 -- 86 |
-10.7973 kcal/mol |
3.36368 kcal/mol |
1.09753 kcal/mol |
262 272@LB@ | |@LB@5'-UUU...AACGG GGGCA...CAG-3'@LB@ GUAUGGCUG@LB@ :||:||||:@LB@ UAUGCCGAU@LB@3'-UUU...GCCUC UGAGG...GAA-5'@LB@ | |@LB@ 89 79@LB@@LB@@LB@Energy -6.34 kcal/mol@LB@Hybridization Energy -10.7973 kcal/mol@LB@Unfolding Energy - mRNA 3.36368 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 263 -- 271@LB@Position - sRNA 80 -- 88@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 80 -- 86@LB@ |
57 |
0.02238 |
0.29 |
ct_132 |
N/A |
-4.44 |
0.450895 |
20 -- 27 |
53 -- 60 |
|
|
_____________19_______28\n_____________|________|\n5'-GAU...AUGGA________AAAAA...ACA-3'\n______________UCUCCCCU\n______________||:|||||\n______________AGGGGGGA\n3'-UUU...ACUGA________CACAU...GAA-5'\n_____________|________|\n_____________61_______52\n |
21 -- 27 |
53 -- 59 |
-12.9803 kcal/mol |
2.08802 kcal/mol |
6.45136 kcal/mol |
19 28@LB@ | |@LB@5'-GAU...AUGGA AAAAA...ACA-3'@LB@ UCUCCCCU@LB@ ||:|||||@LB@ AGGGGGGA@LB@3'-UUU...ACUGA CACAU...GAA-5'@LB@ | |@LB@ 61 52@LB@@LB@@LB@Energy -4.44 kcal/mol@LB@Hybridization Energy -12.9803 kcal/mol@LB@Unfolding Energy - mRNA 2.08802 kcal/mol@LB@Unfolding Energy - sRNA 6.45136 kcal/mol@LB@@LB@Position - mRNA 20 -- 27@LB@Position - sRNA 53 -- 60@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 53 -- 59@LB@ |
58 |
0.02303 |
0.29 |
ct_184 |
N/A |
-4.35 |
0.465673 |
5 -- 18 |
18 -- 35 |
Holliday junction resolvase |
|
_____________4__________________19\n_____________|__________________|\n_______5'-ACGU_______AA_________AUUAA...UGC-3'\n______________UUAGAAG______CAUGG\n______________|:|||||______|||||\n______________AGUCUUC______GUACC\n3'-UUU...AUCUC_______GAUAAG_____GCAAU...GAA-5'\n_____________|__________________|\n_____________36_________________17\n |
5 -- 11 |
29 -- 35 |
-12.193 kcal/mol |
2.86148 kcal/mol |
4.97803 kcal/mol |
4 19@LB@ | |@LB@ 5'-ACGU AA AUUAA...UGC-3'@LB@ UUAGAAG CAUGG@LB@ |:||||| |||||@LB@ AGUCUUC GUACC@LB@3'-UUU...AUCUC GAUAAG GCAAU...GAA-5'@LB@ | |@LB@ 36 17@LB@@LB@@LB@Energy -4.35 kcal/mol@LB@Hybridization Energy -12.193 kcal/mol@LB@Unfolding Energy - mRNA 2.86148 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 5 -- 18@LB@Position - sRNA 18 -- 35@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 29 -- 35@LB@ |
59 |
0.02324 |
0.29 |
ct_106 |
yceC |
-7.97 |
0.086897 |
139 -- 180 |
3 -- 31 |
tRNA pseudouridine synthase A |
|
_____________138__________________________________________181\n_____________|____________________________________________|\n5'-CUC...GAAAA__________UAUCA______AAUUCUCGUAAAAUC________ACACU...CCG-3'\n______________AAGCUGUUCU_______UAGA_______________GUACCAAC\n______________|||||:|||:_______||||_______________:|||||||\n______________UUCGAUAAGG_______AUCU_______________UAUGGUUG\n3'-UUU...CAGUC__________UACCGCA___________________________AA-5'\n_____________|____________________________________________|\n_____________32___________________________________________2\n |
174 -- 180 |
3 -- 9 |
-21.8491 kcal/mol |
5.39956 kcal/mol |
8.47511 kcal/mol |
138 181@LB@ | |@LB@5'-CUC...GAAAA UAUCA AAUUCUCGUAAAAUC ACACU...CCG-3'@LB@ AAGCUGUUCU UAGA GUACCAAC@LB@ |||||:|||: |||| :|||||||@LB@ UUCGAUAAGG AUCU UAUGGUUG@LB@3'-UUU...CAGUC UACCGCA AA-5'@LB@ | |@LB@ 32 2@LB@@LB@@LB@Energy -7.97 kcal/mol@LB@Hybridization Energy -21.8491 kcal/mol@LB@Unfolding Energy - mRNA 5.39956 kcal/mol@LB@Unfolding Energy - sRNA 8.47511 kcal/mol@LB@@LB@Position - mRNA 139 -- 180@LB@Position - sRNA 3 -- 31@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 3 -- 9@LB@ |
60 |
0.02363 |
0.29 |
ct_796 |
glyQ |
-6.44 |
0.189870 |
236 -- 248 |
21 -- 33 |
glycine--tRNA ligase |
|
_____________235___________249\n_____________|_____________|\n5'-UAG...AUGAU__C__________AACUU...AAG-3'\n______________GG_AGCUAUUCUA\n______________:|_||||||||:|\n______________UC_UCGAUAAGGU\n3'-UUU...CUCAG__U__________ACCGC...GAA-5'\n_____________|_____________|\n_____________34____________20\n |
241 -- 247 |
22 -- 28 |
-13.5001 kcal/mol |
2.33043 kcal/mol |
4.73034 kcal/mol |
235 249@LB@ | |@LB@5'-UAG...AUGAU C AACUU...AAG-3'@LB@ GG AGCUAUUCUA@LB@ :| ||||||||:|@LB@ UC UCGAUAAGGU@LB@3'-UUU...CUCAG U ACCGC...GAA-5'@LB@ | |@LB@ 34 20@LB@@LB@@LB@Energy -6.44 kcal/mol@LB@Hybridization Energy -13.5001 kcal/mol@LB@Unfolding Energy - mRNA 2.33043 kcal/mol@LB@Unfolding Energy - sRNA 4.73034 kcal/mol@LB@@LB@Position - mRNA 236 -- 248@LB@Position - sRNA 21 -- 33@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 22 -- 28@LB@ |
61 |
0.02387 |
0.29 |
ct_628 |
ispA |
-7.51 |
0.111028 |
11 -- 52 |
17 -- 56 |
farnesyl diphosphate synthase |
|
_____________10__________________________________________53\n_____________|___________________________________________|\n5'-UUC...GAGAG_G____AA___A_____GAAAA________________UA___AGAGG...UAG-3'\n______________C_UUGU__UAC_AAACG_____AGUUAGGAGCU_UUCC__GGU\n______________|_:|||__|||_||||:_____|||:||:||||_||||__||:\n______________G_GACA__AUG_UUUGU_____UCAGUCUUCGA_AAGG__CCG\n3'-UUU...AAGGG_G____C__________GAUC____________U____UA___CAAUC...GAA-5'\n_____________|___________________________________________|\n_____________57__________________________________________16\n |
36 -- 42 |
28 -- 34 |
-30.6817 kcal/mol |
10.2369 kcal/mol |
12.9359 kcal/mol |
10 53@LB@ | |@LB@5'-UUC...GAGAG G AA A GAAAA UA AGAGG...UAG-3'@LB@ C UUGU UAC AAACG AGUUAGGAGCU UUCC GGU@LB@ | :||| ||| ||||: |||:||:|||| |||| ||:@LB@ G GACA AUG UUUGU UCAGUCUUCGA AAGG CCG@LB@3'-UUU...AAGGG G C GAUC U UA CAAUC...GAA-5'@LB@ | |@LB@ 57 16@LB@@LB@@LB@Energy -7.51 kcal/mol@LB@Hybridization Energy -30.6817 kcal/mol@LB@Unfolding Energy - mRNA 10.2369 kcal/mol@LB@Unfolding Energy - sRNA 12.9359 kcal/mol@LB@@LB@Position - mRNA 11 -- 52@LB@Position - sRNA 17 -- 56@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 28 -- 34@LB@ |
62 |
0.02417 |
0.29 |
ct_705 |
clpX |
-8.32 |
0.072096 |
259 -- 275 |
17 -- 33 |
ATP-dependent Clp protease ATP-binding subunit ClpX |
|
_____________258_______________276\n_____________|_________________|\n5'-CUG...UGUUG________A__GC____CCAUC...AUU-3'\n______________AGAAGCUA_UC__UGGU\n______________||||||||_||__|||:\n______________UCUUCGAU_AG__ACCG\n3'-UUU...CUCAG________A__GU____CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
260 -- 266 |
26 -- 32 |
-18.4351 kcal/mol |
5.13531 kcal/mol |
4.97804 kcal/mol |
258 276@LB@ | |@LB@5'-CUG...UGUUG A GC CCAUC...AUU-3'@LB@ AGAAGCUA UC UGGU@LB@ |||||||| || |||:@LB@ UCUUCGAU AG ACCG@LB@3'-UUU...CUCAG A GU CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -8.32 kcal/mol@LB@Hybridization Energy -18.4351 kcal/mol@LB@Unfolding Energy - mRNA 5.13531 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 259 -- 275@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 26 -- 32@LB@ |
63 |
0.02436 |
0.29 |
ct_270 |
pbp3 |
-9.04 |
0.048476 |
131 -- 156 |
5 -- 34 |
penicillin-binding protein |
|
_____________130_____________________________157\n_____________|_______________________________|\n5'-UAA...UGUUG____U____U____UCC______________GUAUC...GAG-3'\n______________CAGA_AGCU_UUCU________AGAAUACCA\n______________||||_||||_|||:________|||||||||\n______________GUCU_UCGA_AAGG________UCUUAUGGU\n3'-UUU...UCUCA_________U____UACCGCAA_________UGAA-5'\n_____________|_______________________________|\n_____________35______________________________4\n |
149 -- 155 |
6 -- 12 |
-21.654 kcal/mol |
4.02029 kcal/mol |
8.59194 kcal/mol |
130 157@LB@ | |@LB@5'-UAA...UGUUG U U UCC GUAUC...GAG-3'@LB@ CAGA AGCU UUCU AGAAUACCA@LB@ |||| |||| |||: |||||||||@LB@ GUCU UCGA AAGG UCUUAUGGU@LB@3'-UUU...UCUCA U UACCGCAA UGAA-5'@LB@ | |@LB@ 35 4@LB@@LB@@LB@Energy -9.04 kcal/mol@LB@Hybridization Energy -21.654 kcal/mol@LB@Unfolding Energy - mRNA 4.02029 kcal/mol@LB@Unfolding Energy - sRNA 8.59194 kcal/mol@LB@@LB@Position - mRNA 131 -- 156@LB@Position - sRNA 5 -- 34@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 6 -- 12@LB@ |
64 |
0.02465 |
0.29 |
ct_045 |
pepA |
-6.49 |
0.184926 |
191 -- 205 |
17 -- 33 |
cytosol aminopeptidase |
|
_____________190_______________206\n_____________|_________________|\n5'-UUU...AACAA_________________AUUAC...CUG-3'\n______________AGAGGUUAUU__GUGGU\n______________|||:|:||||__:|||:\n______________UCUUCGAUAA__UACCG\n3'-UUU...CUCAG__________GG_____CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
191 -- 197 |
27 -- 33 |
-15.0477 kcal/mol |
3.57571 kcal/mol |
4.97804 kcal/mol |
190 206@LB@ | |@LB@5'-UUU...AACAA AUUAC...CUG-3'@LB@ AGAGGUUAUU GUGGU@LB@ |||:|:|||| :|||:@LB@ UCUUCGAUAA UACCG@LB@3'-UUU...CUCAG GG CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -6.49 kcal/mol@LB@Hybridization Energy -15.0477 kcal/mol@LB@Unfolding Energy - mRNA 3.57571 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 191 -- 205@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 27 -- 33@LB@ |
65 |
0.02498 |
0.29 |
ct_846 |
N/A |
-7.66 |
0.102535 |
215 -- 232 |
42 -- 57 |
|
|
_____________214________________233\n_____________|__________________|\n5'-GCG...AUCUU____GAUAA_________AACUC...CUC-3'\n______________CCCC_____GUACAAACA\n______________||||_____|||||||||\n______________GGGG_____CAUGUUUGU\n3'-UUU...GAAGG____ACA___________GAUCU...GAA-5'\n_____________|__________________|\n_____________58_________________41\n |
226 -- 232 |
42 -- 48 |
-18.5622 kcal/mol |
3.08308 kcal/mol |
7.81778 kcal/mol |
214 233@LB@ | |@LB@5'-GCG...AUCUU GAUAA AACUC...CUC-3'@LB@ CCCC GUACAAACA@LB@ |||| |||||||||@LB@ GGGG CAUGUUUGU@LB@3'-UUU...GAAGG ACA GAUCU...GAA-5'@LB@ | |@LB@ 58 41@LB@@LB@@LB@Energy -7.66 kcal/mol@LB@Hybridization Energy -18.5622 kcal/mol@LB@Unfolding Energy - mRNA 3.08308 kcal/mol@LB@Unfolding Energy - sRNA 7.81778 kcal/mol@LB@@LB@Position - mRNA 215 -- 232@LB@Position - sRNA 42 -- 57@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 42 -- 48@LB@ |
66 |
0.02511 |
0.29 |
ct_461 |
N/A |
-5.44 |
0.300406 |
64 -- 70 |
79 -- 85 |
UDP-2 3-diacylglucosamine pyrophosphohydrolase |
|
_____________63______71\n_____________|_______|\n5'-ACA...UAAAU_______AGUUU...UGA-3'\n______________UGGCUAA\n______________:||||||\n______________GCCGAUU\n3'-UUU...UCUAU_______GAGGU...GAA-5'\n_____________|_______|\n_____________86______78\n |
64 -- 70 |
79 -- 85 |
-7.83174 kcal/mol |
1.29235 kcal/mol |
1.09751 kcal/mol |
63 71@LB@ | |@LB@5'-ACA...UAAAU AGUUU...UGA-3'@LB@ UGGCUAA@LB@ :||||||@LB@ GCCGAUU@LB@3'-UUU...UCUAU GAGGU...GAA-5'@LB@ | |@LB@ 86 78@LB@@LB@@LB@Energy -5.44 kcal/mol@LB@Hybridization Energy -7.83174 kcal/mol@LB@Unfolding Energy - mRNA 1.29235 kcal/mol@LB@Unfolding Energy - sRNA 1.09751 kcal/mol@LB@@LB@Position - mRNA 64 -- 70@LB@Position - sRNA 79 -- 85@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 79 -- 85@LB@ |
67 |
0.02533 |
0.29 |
ct_395 |
grpE |
-6.02 |
0.231793 |
191 -- 203 |
19 -- 33 |
stress response protein GrpE |
|
_____________190_____________204\n_____________|_______________|\n5'-CCU...CGCUA_______________ACAGA...UAA-3'\n______________AGGAGCUAU__CAUG\n______________||:||||||__||||\n______________UCUUCGAUA__GUAC\n3'-UUU...CUCAG_________AG____CGCAA...GAA-5'\n_____________|_______________|\n_____________34______________18\n |
192 -- 198 |
26 -- 32 |
-14.6636 kcal/mol |
3.66894 kcal/mol |
4.97702 kcal/mol |
190 204@LB@ | |@LB@5'-CCU...CGCUA ACAGA...UAA-3'@LB@ AGGAGCUAU CAUG@LB@ ||:|||||| ||||@LB@ UCUUCGAUA GUAC@LB@3'-UUU...CUCAG AG CGCAA...GAA-5'@LB@ | |@LB@ 34 18@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -14.6636 kcal/mol@LB@Unfolding Energy - mRNA 3.66894 kcal/mol@LB@Unfolding Energy - sRNA 4.97702 kcal/mol@LB@@LB@Position - mRNA 191 -- 203@LB@Position - sRNA 19 -- 33@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 26 -- 32@LB@ |
68 |
0.02545 |
0.29 |
ct_369 |
aroB |
-8.93 |
0.051509 |
264 -- 292 |
1 -- 31 |
3-dehydroquinate synthase |
|
_____________263_____________________________293\n_____________|_______________________________|\n5'-GGC...ACCCU_________GCUU_______UC_________CCCUCUCA-3'\n______________AAGCUGUUU_____CGUU_G__UACCGACUU\n______________|||||:||:_____||||_|__||||:||||\n______________UUCGAUAAG_____GCAA_C__AUGGUUGAA\n3'-UUU...CAGUC_________GUACC____U_UU_________-5'\n_____________|______________________________|\n_____________32_____________________________1\n |
286 -- 292 |
1 -- 7 |
-23.4181 kcal/mol |
6.00993 kcal/mol |
8.47514 kcal/mol |
263 293@LB@ | |@LB@5'-GGC...ACCCU GCUU UC CCCUCUCA-3'@LB@ AAGCUGUUU CGUU G UACCGACUU@LB@ |||||:||: |||| | ||||:||||@LB@ UUCGAUAAG GCAA C AUGGUUGAA@LB@3'-UUU...CAGUC GUACC U UU -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -8.93 kcal/mol@LB@Hybridization Energy -23.4181 kcal/mol@LB@Unfolding Energy - mRNA 6.00993 kcal/mol@LB@Unfolding Energy - sRNA 8.47514 kcal/mol@LB@@LB@Position - mRNA 264 -- 292@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 1 -- 7@LB@ |
69 |
0.02639 |
0.29 |
ct_745 |
hemG |
-5.84 |
0.251832 |
282 -- 296 |
21 -- 34 |
protoporphyrinogen oxidase |
|
_____________281_____________297\n_____________|_______________|\n5'-UUU...AUGUG___CU_U________GAAA-3'\n______________CAG__G_CUAUUCUA\n______________|||__|_||||||:|\n______________GUC__C_GAUAAGGU\n3'-UUU...UCUCA___UU__________ACCGC...GAA-5'\n_____________|_______________|\n_____________35______________20\n |
290 -- 296 |
21 -- 27 |
-11.5957 kcal/mol |
1.02702 kcal/mol |
4.73132 kcal/mol |
281 297@LB@ | |@LB@5'-UUU...AUGUG CU U GAAA-3'@LB@ CAG G CUAUUCUA@LB@ ||| | ||||||:|@LB@ GUC C GAUAAGGU@LB@3'-UUU...UCUCA UU ACCGC...GAA-5'@LB@ | |@LB@ 35 20@LB@@LB@@LB@Energy -5.84 kcal/mol@LB@Hybridization Energy -11.5957 kcal/mol@LB@Unfolding Energy - mRNA 1.02702 kcal/mol@LB@Unfolding Energy - sRNA 4.73132 kcal/mol@LB@@LB@Position - mRNA 282 -- 296@LB@Position - sRNA 21 -- 34@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 21 -- 27@LB@ |
70 |
0.02698 |
0.29 |
ct_381 |
artJ |
-6.76 |
0.162330 |
168 -- 194 |
31 -- 57 |
arginine ABC transporter substrate-binding protein ArtJ |
|
_____________167__________________________195\n_____________|____________________________|\n5'-AUU...UAUAG______CC__UA__C_____________GUGAG...GUG-3'\n______________UCCCUG__GU__GA_CAUU_GAGUCGGA\n______________:|||||__||__:|_||:|_|||||:||\n______________GGGGAC__CA__UU_GUGA_CUCAGUCU\n3'-UUU...GAAGG______A___UG__U____U________UCGAU...GAA-5'\n_____________|____________________________|\n_____________58___________________________30\n |
188 -- 194 |
31 -- 37 |
-25.975 kcal/mol |
9.18513 kcal/mol |
10.0297 kcal/mol |
167 195@LB@ | |@LB@5'-AUU...UAUAG CC UA C GUGAG...GUG-3'@LB@ UCCCUG GU GA CAUU GAGUCGGA@LB@ :||||| || :| ||:| |||||:||@LB@ GGGGAC CA UU GUGA CUCAGUCU@LB@3'-UUU...GAAGG A UG U U UCGAU...GAA-5'@LB@ | |@LB@ 58 30@LB@@LB@@LB@Energy -6.76 kcal/mol@LB@Hybridization Energy -25.975 kcal/mol@LB@Unfolding Energy - mRNA 9.18513 kcal/mol@LB@Unfolding Energy - sRNA 10.0297 kcal/mol@LB@@LB@Position - mRNA 168 -- 194@LB@Position - sRNA 31 -- 57@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 31 -- 37@LB@ |
71 |
0.027 |
0.29 |
ct_712 |
N/A |
-6.32 |
0.201489 |
257 -- 263 |
81 -- 87 |
type III secretion system effector protein |
|
_____________256_____264\n_____________|_______|\n5'-CAG...GAGAC_______CCUCG...CAG-3'\n______________UGCGGCU\n______________|:|||||\n______________AUGCCGA\n3'-UUU...CCUCU_______UUGAG...GAA-5'\n_____________|_______|\n_____________88______80\n |
257 -- 263 |
81 -- 87 |
-10.8048 kcal/mol |
3.3916 kcal/mol |
1.09752 kcal/mol |
256 264@LB@ | |@LB@5'-CAG...GAGAC CCUCG...CAG-3'@LB@ UGCGGCU@LB@ |:|||||@LB@ AUGCCGA@LB@3'-UUU...CCUCU UUGAG...GAA-5'@LB@ | |@LB@ 88 80@LB@@LB@@LB@Energy -6.32 kcal/mol@LB@Hybridization Energy -10.8048 kcal/mol@LB@Unfolding Energy - mRNA 3.3916 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 257 -- 263@LB@Position - sRNA 81 -- 87@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 81 -- 87@LB@ |
72 |
0.02709 |
0.29 |
ct_530 |
fmt |
-6.32 |
0.201483 |
239 -- 246 |
80 -- 87 |
methionyl-tRNA formyltransferase |
|
_____________238______247\n_____________|________|\n5'-UAA...CAAUU________CUGUU...CGC-3'\n______________UGCGGCUA\n______________|:||||||\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
240 -- 246 |
80 -- 86 |
-12.3749 kcal/mol |
4.96164 kcal/mol |
1.09752 kcal/mol |
238 247@LB@ | |@LB@5'-UAA...CAAUU CUGUU...CGC-3'@LB@ UGCGGCUA@LB@ |:||||||@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -6.32 kcal/mol@LB@Hybridization Energy -12.3749 kcal/mol@LB@Unfolding Energy - mRNA 4.96164 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 239 -- 246@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 80 -- 86@LB@ |
73 |
0.02714 |
0.29 |
ct_211 |
N/A |
-9.30 |
0.041995 |
126 -- 170 |
20 -- 59 |
|
|
_____________125____________________________________________171\n_____________|______________________________________________|\n5'-AGA...UCAAG_____AUUCU_______AAGUC____UUUGAU_________C____ACGAA...UUU-3'\n______________CCCCU_____CUGUGUG_____CAUU_______GAAGCUAU_CCAU\n______________||||:_____||||||:_____||:|_______||||||||_||||\n______________GGGGG_____GACACAU_____GUGA_______CUUCGAUA_GGUA\n3'-UUU...CUGAA_________________GUUU_____UCUCAGU________A____CCGCA...GAA-5'\n_____________|______________________________________________|\n_____________60_____________________________________________19\n |
159 -- 165 |
25 -- 31 |
-32.2967 kcal/mol |
9.12092 kcal/mol |
13.8789 kcal/mol |
125 171@LB@ | |@LB@5'-AGA...UCAAG AUUCU AAGUC UUUGAU C ACGAA...UUU-3'@LB@ CCCCU CUGUGUG CAUU GAAGCUAU CCAU@LB@ ||||: ||||||: ||:| |||||||| ||||@LB@ GGGGG GACACAU GUGA CUUCGAUA GGUA@LB@3'-UUU...CUGAA GUUU UCUCAGU A CCGCA...GAA-5'@LB@ | |@LB@ 60 19@LB@@LB@@LB@Energy -9.30 kcal/mol@LB@Hybridization Energy -32.2967 kcal/mol@LB@Unfolding Energy - mRNA 9.12092 kcal/mol@LB@Unfolding Energy - sRNA 13.8789 kcal/mol@LB@@LB@Position - mRNA 126 -- 170@LB@Position - sRNA 20 -- 59@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 25 -- 31@LB@ |
74 |
0.02719 |
0.29 |
ct_114 |
N/A |
-7.65 |
0.102976 |
115 -- 129 |
17 -- 32 |
|
|
_____________114______________130\n_____________|________________|\n5'-AGG...GCGGU______UA________AAAAG...AAA-3'\n______________GGAGCU___CUAUGGC\n______________|:||||___|:|||||\n______________CUUCGA___GGUACCG\n3'-UUU...UCAGU______UAA_______CAAUC...GAA-5'\n_____________|________________|\n_____________33_______________16\n |
123 -- 129 |
17 -- 23 |
-17.2748 kcal/mol |
4.65579 kcal/mol |
4.96575 kcal/mol |
114 130@LB@ | |@LB@5'-AGG...GCGGU UA AAAAG...AAA-3'@LB@ GGAGCU CUAUGGC@LB@ |:|||| |:|||||@LB@ CUUCGA GGUACCG@LB@3'-UUU...UCAGU UAA CAAUC...GAA-5'@LB@ | |@LB@ 33 16@LB@@LB@@LB@Energy -7.65 kcal/mol@LB@Hybridization Energy -17.2748 kcal/mol@LB@Unfolding Energy - mRNA 4.65579 kcal/mol@LB@Unfolding Energy - sRNA 4.96575 kcal/mol@LB@@LB@Position - mRNA 115 -- 129@LB@Position - sRNA 17 -- 32@LB@Position Seed - mRNA 123 -- 129@LB@Position Seed - sRNA 17 -- 23@LB@ |
75 |
0.02725 |
0.29 |
ct_536 |
dnaQ_2 |
-6.54 |
0.180881 |
173 -- 186 |
18 -- 31 |
DNA polymerase III subunit epsilon |
|
_____________172____________187\n_____________|______________|\n5'-AGA...GAUUU_____U________AGAAC...GGU-3'\n______________GAGCU_UUUUAUGG\n______________:||||_||::||||\n______________UUCGA_AAGGUACC\n3'-UUU...CAGUC_____U________GCAAU...GAA-5'\n_____________|______________|\n_____________32_____________17\n |
180 -- 186 |
18 -- 24 |
-14.3298 kcal/mol |
2.92947 kcal/mol |
4.86077 kcal/mol |
172 187@LB@ | |@LB@5'-AGA...GAUUU U AGAAC...GGU-3'@LB@ GAGCU UUUUAUGG@LB@ :|||| ||::||||@LB@ UUCGA AAGGUACC@LB@3'-UUU...CAGUC U GCAAU...GAA-5'@LB@ | |@LB@ 32 17@LB@@LB@@LB@Energy -6.54 kcal/mol@LB@Hybridization Energy -14.3298 kcal/mol@LB@Unfolding Energy - mRNA 2.92947 kcal/mol@LB@Unfolding Energy - sRNA 4.86077 kcal/mol@LB@@LB@Position - mRNA 173 -- 186@LB@Position - sRNA 18 -- 31@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 18 -- 24@LB@ |
76 |
0.02744 |
0.29 |
ct_510 |
secY |
-5.37 |
0.309530 |
200 -- 207 |
80 -- 87 |
preprotein translocase subunit SecY |
|
_____________199______208\n_____________|________|\n5'-GAU...AAGUU________CAUUG...UCC-3'\n______________UAUGGCUA\n______________||:|||||\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
201 -- 207 |
80 -- 86 |
-9.93483 kcal/mol |
3.46443 kcal/mol |
1.09752 kcal/mol |
199 208@LB@ | |@LB@5'-GAU...AAGUU CAUUG...UCC-3'@LB@ UAUGGCUA@LB@ ||:|||||@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -5.37 kcal/mol@LB@Hybridization Energy -9.93483 kcal/mol@LB@Unfolding Energy - mRNA 3.46443 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 200 -- 207@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 80 -- 86@LB@ |
77 |
0.02807 |
0.29 |
ct_309 |
N/A |
-7.23 |
0.128520 |
50 -- 64 |
17 -- 33 |
|
|
_____________49________________65\n_____________|_________________|\n5'-AGA...GCUUA_________GU______UAAAU...UAA-3'\n______________AGGGGCUAU____UGGU\n______________||::|||||____|||:\n______________UCUUCGAUA____ACCG\n3'-UUU...CUCAG_________AGGU____CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
52 -- 58 |
25 -- 31 |
-14.8286 kcal/mol |
2.62564 kcal/mol |
4.97804 kcal/mol |
49 65@LB@ | |@LB@5'-AGA...GCUUA GU UAAAU...UAA-3'@LB@ AGGGGCUAU UGGU@LB@ ||::||||| |||:@LB@ UCUUCGAUA ACCG@LB@3'-UUU...CUCAG AGGU CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -7.23 kcal/mol@LB@Hybridization Energy -14.8286 kcal/mol@LB@Unfolding Energy - mRNA 2.62564 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 50 -- 64@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 25 -- 31@LB@ |
78 |
0.0282 |
0.29 |
ct_131 |
N/A |
-9.30 |
0.042003 |
199 -- 219 |
17 -- 35 |
|
|
_____________198___________________220\n_____________|_____________________|\n5'-GAG...UGAAU___U_____GUUC________AUAAA...AAU-3'\n______________UCA_GAAGC____UCCAUGGU\n______________|||_|||||____|||||||:\n______________AGU_CUUCG____AGGUACCG\n3'-UUU...AUCUC_________AUA_________CAAUC...GAA-5'\n_____________|_____________________|\n_____________36____________________16\n |
213 -- 219 |
17 -- 23 |
-20.9121 kcal/mol |
6.63751 kcal/mol |
4.9781 kcal/mol |
198 220@LB@ | |@LB@5'-GAG...UGAAU U GUUC AUAAA...AAU-3'@LB@ UCA GAAGC UCCAUGGU@LB@ ||| ||||| |||||||:@LB@ AGU CUUCG AGGUACCG@LB@3'-UUU...AUCUC AUA CAAUC...GAA-5'@LB@ | |@LB@ 36 16@LB@@LB@@LB@Energy -9.30 kcal/mol@LB@Hybridization Energy -20.9121 kcal/mol@LB@Unfolding Energy - mRNA 6.63751 kcal/mol@LB@Unfolding Energy - sRNA 4.9781 kcal/mol@LB@@LB@Position - mRNA 199 -- 219@LB@Position - sRNA 17 -- 35@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 17 -- 23@LB@ |
79 |
0.0288 |
0.29 |
ct_431 |
clpP_1 |
-3.71 |
0.580570 |
128 -- 134 |
79 -- 85 |
ATP-dependent Clp protease proteolytic subunit |
|
_____________127_____135\n_____________|_______|\n5'-GAA...ACGUG_______UUUAU...AAA-3'\n______________UGGCUGA\n______________:||||:|\n______________GCCGAUU\n3'-UUU...UCUAU_______GAGGU...GAA-5'\n_____________|_______|\n_____________86______78\n |
128 -- 134 |
79 -- 85 |
-7.88567 kcal/mol |
3.08 kcal/mol |
1.09751 kcal/mol |
127 135@LB@ | |@LB@5'-GAA...ACGUG UUUAU...AAA-3'@LB@ UGGCUGA@LB@ :||||:|@LB@ GCCGAUU@LB@3'-UUU...UCUAU GAGGU...GAA-5'@LB@ | |@LB@ 86 78@LB@@LB@@LB@Energy -3.71 kcal/mol@LB@Hybridization Energy -7.88567 kcal/mol@LB@Unfolding Energy - mRNA 3.08 kcal/mol@LB@Unfolding Energy - sRNA 1.09751 kcal/mol@LB@@LB@Position - mRNA 128 -- 134@LB@Position - sRNA 79 -- 85@LB@Position Seed - mRNA 128 -- 134@LB@Position Seed - sRNA 79 -- 85@LB@ |
80 |
0.02888 |
0.29 |
ct_821 |
sucC |
-7.97 |
0.087313 |
257 -- 264 |
53 -- 60 |
succinyl-CoA ligase subunit beta |
|
_____________256______265\n_____________|________|\n5'-UCG...CCUAU________AUCAC...CAG-3'\n______________UCCCCCCU\n______________||||||||\n______________AGGGGGGA\n3'-UUU...ACUGA________CACAU...GAA-5'\n_____________|________|\n_____________61_______52\n |
258 -- 264 |
53 -- 59 |
-16.0066 kcal/mol |
1.58949 kcal/mol |
6.45136 kcal/mol |
256 265@LB@ | |@LB@5'-UCG...CCUAU AUCAC...CAG-3'@LB@ UCCCCCCU@LB@ ||||||||@LB@ AGGGGGGA@LB@3'-UUU...ACUGA CACAU...GAA-5'@LB@ | |@LB@ 61 52@LB@@LB@@LB@Energy -7.97 kcal/mol@LB@Hybridization Energy -16.0066 kcal/mol@LB@Unfolding Energy - mRNA 1.58949 kcal/mol@LB@Unfolding Energy - sRNA 6.45136 kcal/mol@LB@@LB@Position - mRNA 257 -- 264@LB@Position - sRNA 53 -- 60@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 53 -- 59@LB@ |
81 |
0.02893 |
0.29 |
ct_185 |
zwf |
-6.95 |
0.147965 |
38 -- 47 |
51 -- 60 |
glucose-6-phosphate 1-dehydrogenase |
|
_____________37_________48\n_____________|__________|\n5'-AAG...GCCUG__________AUCGU...UUU-3'\n______________UCCUCCCUGU\n______________|||:||||||\n______________AGGGGGGACA\n3'-UUU...ACUGA__________CAUGU...GAA-5'\n_____________|__________|\n_____________61_________50\n |
41 -- 47 |
51 -- 57 |
-17.9011 kcal/mol |
1.87917 kcal/mol |
9.07545 kcal/mol |
37 48@LB@ | |@LB@5'-AAG...GCCUG AUCGU...UUU-3'@LB@ UCCUCCCUGU@LB@ |||:||||||@LB@ AGGGGGGACA@LB@3'-UUU...ACUGA CAUGU...GAA-5'@LB@ | |@LB@ 61 50@LB@@LB@@LB@Energy -6.95 kcal/mol@LB@Hybridization Energy -17.9011 kcal/mol@LB@Unfolding Energy - mRNA 1.87917 kcal/mol@LB@Unfolding Energy - sRNA 9.07545 kcal/mol@LB@@LB@Position - mRNA 38 -- 47@LB@Position - sRNA 51 -- 60@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 51 -- 57@LB@ |
82 |
0.02927 |
0.29 |
ct_342 |
rs21 |
-5.39 |
0.307662 |
118 -- 125 |
14 -- 21 |
30S ribosomal protein S21 |
|
_____________117______126\n_____________|________|\n5'-UUA...UAAAA________ACAAU...AGU-3'\n______________GUGGUGUU\n______________:|||:|||\n______________UACCGCAA\n3'-UUU...UAAGG________UCUUA...GAA-5'\n_____________|________|\n_____________22_______13\n |
119 -- 125 |
14 -- 20 |
-8.72589 kcal/mol |
2.15057 kcal/mol |
1.18847 kcal/mol |
117 126@LB@ | |@LB@5'-UUA...UAAAA ACAAU...AGU-3'@LB@ GUGGUGUU@LB@ :|||:|||@LB@ UACCGCAA@LB@3'-UUU...UAAGG UCUUA...GAA-5'@LB@ | |@LB@ 22 13@LB@@LB@@LB@Energy -5.39 kcal/mol@LB@Hybridization Energy -8.72589 kcal/mol@LB@Unfolding Energy - mRNA 2.15057 kcal/mol@LB@Unfolding Energy - sRNA 1.18847 kcal/mol@LB@@LB@Position - mRNA 118 -- 125@LB@Position - sRNA 14 -- 21@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 14 -- 20@LB@ |
83 |
0.0294 |
0.29 |
ct_767 |
N/A |
-5.43 |
0.301596 |
255 -- 261 |
54 -- 60 |
|
|
_____________254_____262\n_____________|_______|\n5'-CUC...UUUAU_______UGGAA...AAC-3'\n______________UCCCCCU\n______________||||||:\n______________AGGGGGG\n3'-UUU...ACUGA_______ACACA...GAA-5'\n_____________|_______|\n_____________61______53\n |
255 -- 261 |
54 -- 60 |
-13.2051 kcal/mol |
1.33057 kcal/mol |
6.44182 kcal/mol |
254 262@LB@ | |@LB@5'-CUC...UUUAU UGGAA...AAC-3'@LB@ UCCCCCU@LB@ ||||||:@LB@ AGGGGGG@LB@3'-UUU...ACUGA ACACA...GAA-5'@LB@ | |@LB@ 61 53@LB@@LB@@LB@Energy -5.43 kcal/mol@LB@Hybridization Energy -13.2051 kcal/mol@LB@Unfolding Energy - mRNA 1.33057 kcal/mol@LB@Unfolding Energy - sRNA 6.44182 kcal/mol@LB@@LB@Position - mRNA 255 -- 261@LB@Position - sRNA 54 -- 60@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 54 -- 60@LB@ |
84 |
0.03042 |
0.29 |
ct_726 |
N/A |
-6.32 |
0.200732 |
30 -- 36 |
81 -- 87 |
cell division protein |
|
_____________29______37\n_____________|_______|\n5'-AGG...CCCCC_______UGCUG...AUC-3'\n______________UAUGGCU\n______________||:||||\n______________AUGCCGA\n3'-UUU...CCUCU_______UUGAG...GAA-5'\n_____________|_______|\n_____________88______80\n |
30 -- 36 |
81 -- 87 |
-8.84564 kcal/mol |
1.42457 kcal/mol |
1.09752 kcal/mol |
29 37@LB@ | |@LB@5'-AGG...CCCCC UGCUG...AUC-3'@LB@ UAUGGCU@LB@ ||:||||@LB@ AUGCCGA@LB@3'-UUU...CCUCU UUGAG...GAA-5'@LB@ | |@LB@ 88 80@LB@@LB@@LB@Energy -6.32 kcal/mol@LB@Hybridization Energy -8.84564 kcal/mol@LB@Unfolding Energy - mRNA 1.42457 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 30 -- 36@LB@Position - sRNA 81 -- 87@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 81 -- 87@LB@ |
85 |
0.03073 |
0.29 |
ct_522 |
rs3 |
-5.11 |
0.345416 |
189 -- 204 |
18 -- 34 |
30S ribosomal protein S3 |
|
_____________188_______________205\n_____________|_________________|\n5'-UGU...GGCAG_______AAGG______GUCAA...UCA-3'\n______________UAGGAGU_____UAUGG\n______________:||:||:_____:||||\n______________GUCUUCG_____GUACC\n3'-UUU...UCUCA_______AUAAG_____GCAAU...GAA-5'\n_____________|_________________|\n_____________35________________17\n |
189 -- 195 |
28 -- 34 |
-12.0284 kcal/mol |
1.93617 kcal/mol |
4.97803 kcal/mol |
188 205@LB@ | |@LB@5'-UGU...GGCAG AAGG GUCAA...UCA-3'@LB@ UAGGAGU UAUGG@LB@ :||:||: :||||@LB@ GUCUUCG GUACC@LB@3'-UUU...UCUCA AUAAG GCAAU...GAA-5'@LB@ | |@LB@ 35 17@LB@@LB@@LB@Energy -5.11 kcal/mol@LB@Hybridization Energy -12.0284 kcal/mol@LB@Unfolding Energy - mRNA 1.93617 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 189 -- 204@LB@Position - sRNA 18 -- 34@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 28 -- 34@LB@ |
86 |
0.03096 |
0.29 |
ct_221 |
yqfU |
-7.15 |
0.133289 |
38 -- 44 |
80 -- 86 |
|
|
_____________37______45\n_____________|_______|\n5'-AUA...GCUCA_______GAGCA...GUG-3'\n______________GCGGUUA\n______________:|||:||\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
38 -- 44 |
80 -- 86 |
-8.46136 kcal/mol |
0.243281 kcal/mol |
1.06449 kcal/mol |
37 45@LB@ | |@LB@5'-AUA...GCUCA GAGCA...GUG-3'@LB@ GCGGUUA@LB@ :|||:||@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -7.15 kcal/mol@LB@Hybridization Energy -8.46136 kcal/mol@LB@Unfolding Energy - mRNA 0.243281 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 38 -- 44@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 80 -- 86@LB@ |
87 |
0.03104 |
0.29 |
ct_437 |
fusA |
-5.85 |
0.250219 |
118 -- 125 |
79 -- 86 |
elongation factor G |
|
_____________117______126\n_____________|________|\n5'-AUC...AUCGC________AGCAA...UCU-3'\n______________AUGGCUGA\n______________|:||||:|\n______________UGCCGAUU\n3'-UUU...CUCUA________GAGGU...GAA-5'\n_____________|________|\n_____________87_______78\n |
119 -- 125 |
79 -- 85 |
-8.84241 kcal/mol |
1.89322 kcal/mol |
1.09752 kcal/mol |
117 126@LB@ | |@LB@5'-AUC...AUCGC AGCAA...UCU-3'@LB@ AUGGCUGA@LB@ |:||||:|@LB@ UGCCGAUU@LB@3'-UUU...CUCUA GAGGU...GAA-5'@LB@ | |@LB@ 87 78@LB@@LB@@LB@Energy -5.85 kcal/mol@LB@Hybridization Energy -8.84241 kcal/mol@LB@Unfolding Energy - mRNA 1.89322 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 118 -- 125@LB@Position - sRNA 79 -- 86@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 79 -- 85@LB@ |
88 |
0.03104 |
0.29 |
ct_766 |
miaA |
-2.38 |
0.813549 |
82 -- 88 |
27 -- 33 |
tRNA dimethylallyltransferase |
|
_____________81______89\n_____________|_______|\n5'-AUA...UAAUG_______UUGUA...UGU-3'\n______________GGAAGCU\n______________:||||||\n______________UCUUCGA\n3'-UUU...CUCAG_______UAAGG...GAA-5'\n_____________|_______|\n_____________34______26\n |
82 -- 88 |
27 -- 33 |
-8.83329 kcal/mol |
1.86027 kcal/mol |
4.59825 kcal/mol |
81 89@LB@ | |@LB@5'-AUA...UAAUG UUGUA...UGU-3'@LB@ GGAAGCU@LB@ :||||||@LB@ UCUUCGA@LB@3'-UUU...CUCAG UAAGG...GAA-5'@LB@ | |@LB@ 34 26@LB@@LB@@LB@Energy -2.38 kcal/mol@LB@Hybridization Energy -8.83329 kcal/mol@LB@Unfolding Energy - mRNA 1.86027 kcal/mol@LB@Unfolding Energy - sRNA 4.59825 kcal/mol@LB@@LB@Position - mRNA 82 -- 88@LB@Position - sRNA 27 -- 33@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 27 -- 33@LB@ |
89 |
0.03269 |
0.2942 |
ct_269 |
murE |
-8.94 |
0.051230 |
172 -- 183 |
46 -- 57 |
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase |
|
_____________171__________184\n_____________|____________|\n5'-AUC...UGAAG____________UGUCU...UUG-3'\n______________CCCUUGUGUGCG\n______________|||:|||||:|:\n______________GGGGACACAUGU\n3'-UUU...GAAGG____________UUGUG...GAA-5'\n_____________|____________|\n_____________58___________45\n |
176 -- 182 |
47 -- 53 |
-19.7508 kcal/mol |
3.51628 kcal/mol |
7.29173 kcal/mol |
171 184@LB@ | |@LB@5'-AUC...UGAAG UGUCU...UUG-3'@LB@ CCCUUGUGUGCG@LB@ |||:|||||:|:@LB@ GGGGACACAUGU@LB@3'-UUU...GAAGG UUGUG...GAA-5'@LB@ | |@LB@ 58 45@LB@@LB@@LB@Energy -8.94 kcal/mol@LB@Hybridization Energy -19.7508 kcal/mol@LB@Unfolding Energy - mRNA 3.51628 kcal/mol@LB@Unfolding Energy - sRNA 7.29173 kcal/mol@LB@@LB@Position - mRNA 172 -- 183@LB@Position - sRNA 46 -- 57@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 47 -- 53@LB@ |
90 |
0.03275 |
0.2942 |
ct_332 |
pykF |
-4.34 |
0.468844 |
109 -- 116 |
80 -- 87 |
pyruvate kinase |
|
_____________108______117\n_____________|________|\n5'-UUU...GCGAU________CUAAA...GCC-3'\n______________UGCGGUUG\n______________|:|||:|:\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
110 -- 116 |
80 -- 86 |
-9.21836 kcal/mol |
3.78563 kcal/mol |
1.09752 kcal/mol |
108 117@LB@ | |@LB@5'-UUU...GCGAU CUAAA...GCC-3'@LB@ UGCGGUUG@LB@ |:|||:|:@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -4.34 kcal/mol@LB@Hybridization Energy -9.21836 kcal/mol@LB@Unfolding Energy - mRNA 3.78563 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 109 -- 116@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 80 -- 86@LB@ |
91 |
0.03287 |
0.2942 |
ct_674 |
yscC |
-7.61 |
0.105180 |
32 -- 46 |
36 -- 57 |
type II secretion system protein |
|
_____________31_____________________47\n_____________|______________________|\n5'-UGG...ACACA______________G_______AUUUG...CGG-3'\n______________CCCC_______AAA_GCUAGAG\n______________||||_______|||_:||||||\n______________GGGG_______UUU_UGAUCUC\n3'-UUU...GAAGG____ACACAUG___G_______AGUCU...GAA-5'\n_____________|______________________|\n_____________58_____________________35\n |
40 -- 46 |
36 -- 42 |
-18.3 kcal/mol |
2.71277 kcal/mol |
7.97448 kcal/mol |
31 47@LB@ | |@LB@5'-UGG...ACACA G AUUUG...CGG-3'@LB@ CCCC AAA GCUAGAG@LB@ |||| ||| :||||||@LB@ GGGG UUU UGAUCUC@LB@3'-UUU...GAAGG ACACAUG G AGUCU...GAA-5'@LB@ | |@LB@ 58 35@LB@@LB@@LB@Energy -7.61 kcal/mol@LB@Hybridization Energy -18.3 kcal/mol@LB@Unfolding Energy - mRNA 2.71277 kcal/mol@LB@Unfolding Energy - sRNA 7.97448 kcal/mol@LB@@LB@Position - mRNA 32 -- 46@LB@Position - sRNA 36 -- 57@LB@Position Seed - mRNA 40 -- 46@LB@Position Seed - sRNA 36 -- 42@LB@ |
92 |
0.03292 |
0.2942 |
ct_558 |
lipA |
-15.60 |
0.000793 |
187 -- 244 |
3 -- 58 |
lipoyl synthase |
|
_____________186_________________________________________________________245\n_____________|___________________________________________________________|\n5'-ACU...AUAUG_______CUAAA_____ACC__U______UCUC_______UAAAAAAUCU______C__CAGAU...AAA-3'\n______________CCCCCUG_____AAAUG___GA_UCAGAA____CUAUUCC___________AUACC_GC\n______________|||||||_____|||::___||_||||||____|||||||___________|||||_:|\n______________GGGGGAC_____UUUGU___CU_AGUCUU____GAUAAGG___________UAUGG_UG\n3'-UUU...UGAAG_______ACAUG_____GAU__C______C__________UACCGCAAUCU_____U__AA-5'\n_____________|___________________________________________________________|\n_____________59__________________________________________________________2\n |
220 -- 226 |
22 -- 28 |
-35.9268 kcal/mol |
3.77883 kcal/mol |
16.5523 kcal/mol |
186 245@LB@ | |@LB@5'-ACU...AUAUG CUAAA ACC U UCUC UAAAAAAUCU C CAGAU...AAA-3'@LB@ CCCCCUG AAAUG GA UCAGAA CUAUUCC AUACC GC@LB@ ||||||| |||:: || |||||| ||||||| ||||| :|@LB@ GGGGGAC UUUGU CU AGUCUU GAUAAGG UAUGG UG@LB@3'-UUU...UGAAG ACAUG GAU C C UACCGCAAUCU U AA-5'@LB@ | |@LB@ 59 2@LB@@LB@@LB@Energy -15.60 kcal/mol@LB@Hybridization Energy -35.9268 kcal/mol@LB@Unfolding Energy - mRNA 3.77883 kcal/mol@LB@Unfolding Energy - sRNA 16.5523 kcal/mol@LB@@LB@Position - mRNA 187 -- 244@LB@Position - sRNA 3 -- 58@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 22 -- 28@LB@ |
93 |
0.03342 |
0.2954 |
ct_815 |
mrsA_2 |
-4.95 |
0.370159 |
203 -- 227 |
23 -- 45 |
phosphoglucosamine mutase |
|
_____________202_______________________228\n_____________|_________________________|\n5'-UAC...GCAAU_____GU__U__G___C________GGAAC...AGG-3'\n______________GACAC__GA_GU_AGA_AGCUAUUC\n______________:||||__||_||_|||_||||||||\n______________UUGUG__CU_CA_UCU_UCGAUAAG\n3'-UUU...CAUGU_____AU_____G____________GUACC...GAA-5'\n_____________|_________________________|\n_____________46________________________22\n |
221 -- 227 |
23 -- 29 |
-22.8159 kcal/mol |
6.25755 kcal/mol |
11.6121 kcal/mol |
202 228@LB@ | |@LB@5'-UAC...GCAAU GU U G C GGAAC...AGG-3'@LB@ GACAC GA GU AGA AGCUAUUC@LB@ :|||| || || ||| ||||||||@LB@ UUGUG CU CA UCU UCGAUAAG@LB@3'-UUU...CAUGU AU G GUACC...GAA-5'@LB@ | |@LB@ 46 22@LB@@LB@@LB@Energy -4.95 kcal/mol@LB@Hybridization Energy -22.8159 kcal/mol@LB@Unfolding Energy - mRNA 6.25755 kcal/mol@LB@Unfolding Energy - sRNA 11.6121 kcal/mol@LB@@LB@Position - mRNA 203 -- 227@LB@Position - sRNA 23 -- 45@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 23 -- 29@LB@ |
94 |
0.03394 |
0.2959 |
ct_249 |
N/A |
-6.52 |
0.182571 |
223 -- 229 |
80 -- 86 |
|
|
_____________222_____230\n_____________|_______|\n5'-UUG...UGAUC_______UUGGG...CUG-3'\n______________AUGGCUG\n______________|:||||:\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
223 -- 229 |
80 -- 86 |
-8.72307 kcal/mol |
1.13798 kcal/mol |
1.06449 kcal/mol |
222 230@LB@ | |@LB@5'-UUG...UGAUC UUGGG...CUG-3'@LB@ AUGGCUG@LB@ |:||||:@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -6.52 kcal/mol@LB@Hybridization Energy -8.72307 kcal/mol@LB@Unfolding Energy - mRNA 1.13798 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 223 -- 229@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 80 -- 86@LB@ |
95 |
0.03456 |
0.2959 |
ct_073 |
N/A |
-12.13 |
0.007785 |
261 -- 279 |
41 -- 58 |
contains leader (19) peptide |
|
_____________260_________________280\n_____________|___________________|\n5'-GAC...CUGAU_________AUU_______UGACA...GGG-3'\n______________CCCUCUGUG___CAAACAU\n______________|||:|||||___||||||:\n______________GGGGGACAC___GUUUGUG\n3'-UUU...UGAAG_________AU________AUCUC...GAA-5'\n_____________|___________________|\n_____________59__________________40\n |
263 -- 269 |
50 -- 56 |
-22.185 kcal/mol |
2.22773 kcal/mol |
7.82865 kcal/mol |
260 280@LB@ | |@LB@5'-GAC...CUGAU AUU UGACA...GGG-3'@LB@ CCCUCUGUG CAAACAU@LB@ |||:||||| ||||||:@LB@ GGGGGACAC GUUUGUG@LB@3'-UUU...UGAAG AU AUCUC...GAA-5'@LB@ | |@LB@ 59 40@LB@@LB@@LB@Energy -12.13 kcal/mol@LB@Hybridization Energy -22.185 kcal/mol@LB@Unfolding Energy - mRNA 2.22773 kcal/mol@LB@Unfolding Energy - sRNA 7.82865 kcal/mol@LB@@LB@Position - mRNA 261 -- 279@LB@Position - sRNA 41 -- 58@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 50 -- 56@LB@ |
96 |
0.03475 |
0.2959 |
ct_548 |
N/A |
-8.10 |
0.081484 |
276 -- 282 |
54 -- 60 |
|
|
_____________275_____283\n_____________|_______|\n5'-ACA...UGCUC_______ACUAU...AAU-3'\n______________UCCCCCC\n______________|||||||\n______________AGGGGGG\n3'-UUU...ACUGA_______ACACA...GAA-5'\n_____________|_______|\n_____________61______53\n |
276 -- 282 |
54 -- 60 |
-15.7273 kcal/mol |
1.19056 kcal/mol |
6.44182 kcal/mol |
275 283@LB@ | |@LB@5'-ACA...UGCUC ACUAU...AAU-3'@LB@ UCCCCCC@LB@ |||||||@LB@ AGGGGGG@LB@3'-UUU...ACUGA ACACA...GAA-5'@LB@ | |@LB@ 61 53@LB@@LB@@LB@Energy -8.10 kcal/mol@LB@Hybridization Energy -15.7273 kcal/mol@LB@Unfolding Energy - mRNA 1.19056 kcal/mol@LB@Unfolding Energy - sRNA 6.44182 kcal/mol@LB@@LB@Position - mRNA 276 -- 282@LB@Position - sRNA 54 -- 60@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 54 -- 60@LB@ |
97 |
0.03496 |
0.2959 |
ct_539 |
trxA |
-6.38 |
0.195495 |
87 -- 94 |
80 -- 87 |
thioredoxin |
|
_____________86_______95\n_____________|________|\n5'-AUG...GAGGU________ACUGG...UGC-3'\n______________UAUGGCUA\n______________||:|||||\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
88 -- 94 |
80 -- 86 |
-10.4005 kcal/mol |
2.9242 kcal/mol |
1.09752 kcal/mol |
86 95@LB@ | |@LB@5'-AUG...GAGGU ACUGG...UGC-3'@LB@ UAUGGCUA@LB@ ||:|||||@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -6.38 kcal/mol@LB@Hybridization Energy -10.4005 kcal/mol@LB@Unfolding Energy - mRNA 2.9242 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 87 -- 94@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 80 -- 86@LB@ |
98 |
0.03528 |
0.2959 |
ct_676 |
N/A |
-6.99 |
0.144558 |
38 -- 44 |
80 -- 86 |
protein-arginine kinase activator protein |
|
_____________37______45\n_____________|_______|\n5'-GGG...GCUCA_______GAGCA...GUU-3'\n______________GCGGUUA\n______________:|||:||\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
38 -- 44 |
80 -- 86 |
-8.44953 kcal/mol |
0.39201 kcal/mol |
1.06449 kcal/mol |
37 45@LB@ | |@LB@5'-GGG...GCUCA GAGCA...GUU-3'@LB@ GCGGUUA@LB@ :|||:||@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -6.99 kcal/mol@LB@Hybridization Energy -8.44953 kcal/mol@LB@Unfolding Energy - mRNA 0.39201 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 38 -- 44@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 80 -- 86@LB@ |
99 |
0.03647 |
0.3007 |
ct_810 |
rl32 |
-4.11 |
0.507281 |
35 -- 46 |
46 -- 58 |
50S ribosomal protein L32 |
|
_____________34____________47\n_____________|_____________|\n5'-UUC...CAAGU_____________CGUUU...GCA-3'\n______________CUUCCUG_GUAUA\n______________|::||||_|||:|\n______________GGGGGAC_CAUGU\n3'-UUU...UGAAG_______A_____UUGUG...GAA-5'\n_____________|_____________|\n_____________59____________45\n |
35 -- 41 |
52 -- 58 |
-13.0221 kcal/mol |
1.6119 kcal/mol |
7.29598 kcal/mol |
34 47@LB@ | |@LB@5'-UUC...CAAGU CGUUU...GCA-3'@LB@ CUUCCUG GUAUA@LB@ |::|||| |||:|@LB@ GGGGGAC CAUGU@LB@3'-UUU...UGAAG A UUGUG...GAA-5'@LB@ | |@LB@ 59 45@LB@@LB@@LB@Energy -4.11 kcal/mol@LB@Hybridization Energy -13.0221 kcal/mol@LB@Unfolding Energy - mRNA 1.6119 kcal/mol@LB@Unfolding Energy - sRNA 7.29598 kcal/mol@LB@@LB@Position - mRNA 35 -- 46@LB@Position - sRNA 46 -- 58@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 52 -- 58@LB@ |
100 |
0.03658 |
0.3007 |
ct_875 |
N/A |
-4.31 |
0.472369 |
272 -- 278 |
28 -- 34 |
|
|
_____________271_____279\n_____________|_______|\n5'-GGG...AAUCG_______CAAAA...AUA-3'\n______________CAGAAGU\n______________||||||:\n______________GUCUUCG\n3'-UUU...UCUCA_______AUAAG...GAA-5'\n_____________|_______|\n_____________35______27\n |
272 -- 278 |
28 -- 34 |
-8.98313 kcal/mol |
0.5541 kcal/mol |
4.11458 kcal/mol |
271 279@LB@ | |@LB@5'-GGG...AAUCG CAAAA...AUA-3'@LB@ CAGAAGU@LB@ ||||||:@LB@ GUCUUCG@LB@3'-UUU...UCUCA AUAAG...GAA-5'@LB@ | |@LB@ 35 27@LB@@LB@@LB@Energy -4.31 kcal/mol@LB@Hybridization Energy -8.98313 kcal/mol@LB@Unfolding Energy - mRNA 0.5541 kcal/mol@LB@Unfolding Energy - sRNA 4.11458 kcal/mol@LB@@LB@Position - mRNA 272 -- 278@LB@Position - sRNA 28 -- 34@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 28 -- 34@LB@ |
101 |
0.03758 |
0.3036 |
ct_457 |
N/A |
-2.86 |
0.734073 |
54 -- 60 |
80 -- 86 |
transcriptional regulator |
|
_____________53______61\n_____________|_______|\n5'-GGA...GUAAG_______GGUUA...UCU-3'\n______________AUGGUUG\n______________|:||:|:\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
54 -- 60 |
80 -- 86 |
-6.17108 kcal/mol |
2.2465 kcal/mol |
1.06449 kcal/mol |
53 61@LB@ | |@LB@5'-GGA...GUAAG GGUUA...UCU-3'@LB@ AUGGUUG@LB@ |:||:|:@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -2.86 kcal/mol@LB@Hybridization Energy -6.17108 kcal/mol@LB@Unfolding Energy - mRNA 2.2465 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 54 -- 60@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 80 -- 86@LB@ |
102 |
0.03801 |
0.3036 |
ct_001 |
N/A |
-7.82 |
0.094515 |
254 -- 277 |
28 -- 49 |
|
|
_____________253______________________278\n_____________|________________________|\n5'-CUU...GGAGC_____________AUU________AACAG...UAC-3'\n______________UAUAAACACUGGA___UUAGGAGU\n______________||:|||||||:||___|:||:||:\n______________AUGUUUGUGAUCU___AGUCUUCG\n3'-UUU...GACAC_____________C__________AUAAG...GAA-5'\n_____________|________________________|\n_____________50_______________________27\n |
271 -- 277 |
28 -- 34 |
-23.2003 kcal/mol |
3.96195 kcal/mol |
11.4222 kcal/mol |
253 278@LB@ | |@LB@5'-CUU...GGAGC AUU AACAG...UAC-3'@LB@ UAUAAACACUGGA UUAGGAGU@LB@ ||:|||||||:|| |:||:||:@LB@ AUGUUUGUGAUCU AGUCUUCG@LB@3'-UUU...GACAC C AUAAG...GAA-5'@LB@ | |@LB@ 50 27@LB@@LB@@LB@Energy -7.82 kcal/mol@LB@Hybridization Energy -23.2003 kcal/mol@LB@Unfolding Energy - mRNA 3.96195 kcal/mol@LB@Unfolding Energy - sRNA 11.4222 kcal/mol@LB@@LB@Position - mRNA 254 -- 277@LB@Position - sRNA 28 -- 49@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 28 -- 34@LB@ |
103 |
0.03832 |
0.3036 |
ct_382 |
aroG |
-9.59 |
0.035559 |
138 -- 150 |
48 -- 60 |
3-deoxy-7-phosphoheptulonate synthase |
|
_____________137___________151\n_____________|_____________|\n5'-UUU...UUUUC_____________UAUGA...CUA-3'\n______________UCUUCCCUGUGUG\n______________||::||||||||:\n______________AGGGGGGACACAU\n3'-UUU...ACUGA_____________GUUUG...GAA-5'\n_____________|_____________|\n_____________61____________47\n |
144 -- 150 |
48 -- 54 |
-20.2814 kcal/mol |
1.44568 kcal/mol |
9.24642 kcal/mol |
137 151@LB@ | |@LB@5'-UUU...UUUUC UAUGA...CUA-3'@LB@ UCUUCCCUGUGUG@LB@ ||::||||||||:@LB@ AGGGGGGACACAU@LB@3'-UUU...ACUGA GUUUG...GAA-5'@LB@ | |@LB@ 61 47@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -20.2814 kcal/mol@LB@Unfolding Energy - mRNA 1.44568 kcal/mol@LB@Unfolding Energy - sRNA 9.24642 kcal/mol@LB@@LB@Position - mRNA 138 -- 150@LB@Position - sRNA 48 -- 60@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 48 -- 54@LB@ |
104 |
0.03845 |
0.3036 |
ct_860 |
N/A |
-5.72 |
0.265250 |
231 -- 258 |
29 -- 56 |
type III secretion system translocator CopD2 |
|
_____________230__________________________259\n_____________|____________________________|\n5'-AGU...CACUA____CAU________A___CAA______AGCAG...CCA-3'\n______________CCUU___UACAAACA_UAG___CAGGAG\n______________||:|___||||||||_|||___|||:||\n______________GGGA___AUGUUUGU_AUC___GUCUUC\n3'-UUU...AAGGG____CAC________G___UCA______GAUAA...GAA-5'\n_____________|____________________________|\n_____________57___________________________28\n |
239 -- 245 |
42 -- 48 |
-21.1219 kcal/mol |
3.33524 kcal/mol |
12.064 kcal/mol |
230 259@LB@ | |@LB@5'-AGU...CACUA CAU A CAA AGCAG...CCA-3'@LB@ CCUU UACAAACA UAG CAGGAG@LB@ ||:| |||||||| ||| |||:||@LB@ GGGA AUGUUUGU AUC GUCUUC@LB@3'-UUU...AAGGG CAC G UCA GAUAA...GAA-5'@LB@ | |@LB@ 57 28@LB@@LB@@LB@Energy -5.72 kcal/mol@LB@Hybridization Energy -21.1219 kcal/mol@LB@Unfolding Energy - mRNA 3.33524 kcal/mol@LB@Unfolding Energy - sRNA 12.064 kcal/mol@LB@@LB@Position - mRNA 231 -- 258@LB@Position - sRNA 29 -- 56@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 42 -- 48@LB@ |
105 |
0.03879 |
0.3036 |
ct_546 |
N/A |
-8.76 |
0.056849 |
221 -- 228 |
80 -- 87 |
contains leader (17) peptide |
|
_____________220______229\n_____________|________|\n5'-CGC...UUUAU________UUUUU...ACG-3'\n______________UGCGGCUA\n______________|:||||||\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
222 -- 228 |
80 -- 86 |
-12.4581 kcal/mol |
2.60487 kcal/mol |
1.09752 kcal/mol |
220 229@LB@ | |@LB@5'-CGC...UUUAU UUUUU...ACG-3'@LB@ UGCGGCUA@LB@ |:||||||@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -8.76 kcal/mol@LB@Hybridization Energy -12.4581 kcal/mol@LB@Unfolding Energy - mRNA 2.60487 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 221 -- 228@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 80 -- 86@LB@ |
106 |
0.04101 |
0.3134 |
ct_445 |
gltX |
-7.36 |
0.119711 |
199 -- 233 |
6 -- 32 |
glutamate--tRNA ligase |
|
_____________198__________________________________234\n_____________|____________________________________|\n5'-UUU...GUAGC___U_A________AAA__UAC__________A___CCUUC...CAA-3'\n______________GAA_G_CUG_UCCA___UG___GCGUUAGAGU_GCC\n______________|||_|_||:_||||___||___||||||||:|_:||\n______________CUU_C_GAU_AGGU___AC___CGCAAUCUUA_UGG\n3'-UUU...UCAGU_________A__________________________UUGAA-5'\n_____________|____________________________________|\n_____________33___________________________________5\n |
220 -- 226 |
12 -- 18 |
-22.1489 kcal/mol |
6.20636 kcal/mol |
8.57923 kcal/mol |
198 234@LB@ | |@LB@5'-UUU...GUAGC U A AAA UAC A CCUUC...CAA-3'@LB@ GAA G CUG UCCA UG GCGUUAGAGU GCC@LB@ ||| | ||: |||| || ||||||||:| :||@LB@ CUU C GAU AGGU AC CGCAAUCUUA UGG@LB@3'-UUU...UCAGU A UUGAA-5'@LB@ | |@LB@ 33 5@LB@@LB@@LB@Energy -7.36 kcal/mol@LB@Hybridization Energy -22.1489 kcal/mol@LB@Unfolding Energy - mRNA 6.20636 kcal/mol@LB@Unfolding Energy - sRNA 8.57923 kcal/mol@LB@@LB@Position - mRNA 199 -- 233@LB@Position - sRNA 6 -- 32@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 12 -- 18@LB@ |
107 |
0.04107 |
0.3134 |
ct_813 |
N/A |
-9.66 |
0.034154 |
135 -- 167 |
17 -- 51 |
inclusion membrane protein |
|
_____________134_________________________________168\n_____________|___________________________________|\n5'-CCA...AAAUU________AA________U___________U____CCAUC...AGG-3'\n______________UGUGCAGA___UAG_GUC_GAGGCUGUUUU_UGGU\n______________|||:||:|___|||_|||_||:|||:||::_|||:\n______________ACAUGUUU___AUC_CAG_CUUCGAUAAGG_ACCG\n3'-UUU...GGGAC________GUG___U___U___________U____CAAUC...GAA-5'\n_____________|___________________________________|\n_____________52__________________________________16\n |
155 -- 161 |
23 -- 29 |
-33.5835 kcal/mol |
11.0074 kcal/mol |
12.9166 kcal/mol |
134 168@LB@ | |@LB@5'-CCA...AAAUU AA U U CCAUC...AGG-3'@LB@ UGUGCAGA UAG GUC GAGGCUGUUUU UGGU@LB@ |||:||:| ||| ||| ||:|||:||:: |||:@LB@ ACAUGUUU AUC CAG CUUCGAUAAGG ACCG@LB@3'-UUU...GGGAC GUG U U U CAAUC...GAA-5'@LB@ | |@LB@ 52 16@LB@@LB@@LB@Energy -9.66 kcal/mol@LB@Hybridization Energy -33.5835 kcal/mol@LB@Unfolding Energy - mRNA 11.0074 kcal/mol@LB@Unfolding Energy - sRNA 12.9166 kcal/mol@LB@@LB@Position - mRNA 135 -- 167@LB@Position - sRNA 17 -- 51@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 23 -- 29@LB@ |
108 |
0.04117 |
0.3134 |
ct_817 |
tyrP_1 |
-6.29 |
0.204127 |
20 -- 34 |
17 -- 30 |
tyrosine-specific transport protein |
|
_____________19______________35\n_____________|_______________|\n5'-CGA...AUCAU____UACA_______UUUAC...UCC-3'\n______________GGCU____CCAUGGC\n______________:|||____|||||||\n______________UCGA____GGUACCG\n3'-UUU...AGUCU____UAA________CAAUC...GAA-5'\n_____________|_______________|\n_____________31______________16\n |
28 -- 34 |
17 -- 23 |
-15.6862 kcal/mol |
4.66372 kcal/mol |
4.73426 kcal/mol |
19 35@LB@ | |@LB@5'-CGA...AUCAU UACA UUUAC...UCC-3'@LB@ GGCU CCAUGGC@LB@ :||| |||||||@LB@ UCGA GGUACCG@LB@3'-UUU...AGUCU UAA CAAUC...GAA-5'@LB@ | |@LB@ 31 16@LB@@LB@@LB@Energy -6.29 kcal/mol@LB@Hybridization Energy -15.6862 kcal/mol@LB@Unfolding Energy - mRNA 4.66372 kcal/mol@LB@Unfolding Energy - sRNA 4.73426 kcal/mol@LB@@LB@Position - mRNA 20 -- 34@LB@Position - sRNA 17 -- 30@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 17 -- 23@LB@ |
109 |
0.04235 |
0.3194 |
ct_002 |
gatC |
-8.76 |
0.056639 |
255 -- 282 |
18 -- 44 |
aspartyl/glutamyl-tRNA amidotransferase subunit C |
|
_____________254__________________________283\n_____________|____________________________|\n5'-GAC...AUGCU________________AUGCCCA_____AAGAG...CUA-3'\n______________GCAUUGGAGUUGGAAG_______CGUGG\n______________:||:|:||||::||||_______|:|||\n______________UGUGAUCUCAGUCUUC_______GUACC\n3'-UUU...AUGUU________________GAUAAG______GCAAU...GAA-5'\n_____________|____________________________|\n_____________45___________________________17\n |
261 -- 267 |
32 -- 38 |
-28.0671 kcal/mol |
6.54471 kcal/mol |
12.7603 kcal/mol |
254 283@LB@ | |@LB@5'-GAC...AUGCU AUGCCCA AAGAG...CUA-3'@LB@ GCAUUGGAGUUGGAAG CGUGG@LB@ :||:|:||||::|||| |:|||@LB@ UGUGAUCUCAGUCUUC GUACC@LB@3'-UUU...AUGUU GAUAAG GCAAU...GAA-5'@LB@ | |@LB@ 45 17@LB@@LB@@LB@Energy -8.76 kcal/mol@LB@Hybridization Energy -28.0671 kcal/mol@LB@Unfolding Energy - mRNA 6.54471 kcal/mol@LB@Unfolding Energy - sRNA 12.7603 kcal/mol@LB@@LB@Position - mRNA 255 -- 282@LB@Position - sRNA 18 -- 44@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 32 -- 38@LB@ |
110 |
0.04403 |
0.3262 |
ct_742 |
ygcA |
-7.58 |
0.107160 |
204 -- 253 |
23 -- 59 |
rRNA methyltransferse |
|
_____________203__________________________________________________254\n_____________|____________________________________________________|\n5'-AAC...AGUUG________CUAUCGUAAC___________UU___C___UGU___________AUCUC...UUG-3'\n______________CUCUCCUG__________UGUA__AACAU__UGG_GUC___GGAGGCUGUUC\n______________|:|:||||__________||||__||||:__|:|_|||___:||:|||:|||\n______________GGGGGGAC__________ACAU__UUGUG__AUC_CAG___UCUUCGAUAAG\n3'-UUU...CUGAA______________________GU__________U_________________GUACC...GAA-5'\n_____________|____________________________________________________|\n_____________60___________________________________________________22\n |
247 -- 253 |
23 -- 29 |
-33.6475 kcal/mol |
12.386 kcal/mol |
13.6844 kcal/mol |
203 254@LB@ | |@LB@5'-AAC...AGUUG CUAUCGUAAC UU C UGU AUCUC...UUG-3'@LB@ CUCUCCUG UGUA AACAU UGG GUC GGAGGCUGUUC@LB@ |:|:|||| |||| ||||: |:| ||| :||:|||:|||@LB@ GGGGGGAC ACAU UUGUG AUC CAG UCUUCGAUAAG@LB@3'-UUU...CUGAA GU U GUACC...GAA-5'@LB@ | |@LB@ 60 22@LB@@LB@@LB@Energy -7.58 kcal/mol@LB@Hybridization Energy -33.6475 kcal/mol@LB@Unfolding Energy - mRNA 12.386 kcal/mol@LB@Unfolding Energy - sRNA 13.6844 kcal/mol@LB@@LB@Position - mRNA 204 -- 253@LB@Position - sRNA 23 -- 59@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 23 -- 29@LB@ |
111 |
0.04436 |
0.3262 |
ct_405 |
ribC |
-3.97 |
0.532190 |
3 -- 10 |
49 -- 56 |
riboflavin synthase |
|
_____________2________11\n_____________|________|\n_________5'-AA________CUUGU...AUG-3'\n______________UCCUGUGU\n______________:|||||||\n______________GGGACACA\n3'-UUU...AAGGG________UGUUU...GAA-5'\n_____________|________|\n_____________57_______48\n |
4 -- 10 |
49 -- 55 |
-11.4476 kcal/mol |
0.227857 kcal/mol |
7.24525 kcal/mol |
2 11@LB@ | |@LB@ 5'-AA CUUGU...AUG-3'@LB@ UCCUGUGU@LB@ :|||||||@LB@ GGGACACA@LB@3'-UUU...AAGGG UGUUU...GAA-5'@LB@ | |@LB@ 57 48@LB@@LB@@LB@Energy -3.97 kcal/mol@LB@Hybridization Energy -11.4476 kcal/mol@LB@Unfolding Energy - mRNA 0.227857 kcal/mol@LB@Unfolding Energy - sRNA 7.24525 kcal/mol@LB@@LB@Position - mRNA 3 -- 10@LB@Position - sRNA 49 -- 56@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 49 -- 55@LB@ |
112 |
0.04461 |
0.3262 |
ct_089 |
lcrE |
-7.82 |
0.094118 |
129 -- 157 |
3 -- 33 |
low calcium response protein E |
|
_____________128_____________________________158\n_____________|_______________________________|\n5'-CGG...UACCA_______UUA_____AAA_____________CUUUG...UUA-3'\n______________AGAAGUU___CC_UG___UUAGAAU_CCAGC\n______________|||||:|___||_||___|||||||_|||:|\n______________UCUUCGA___GG_AC___AAUCUUA_GGUUG\n3'-UUU...CUCAG_______UAA__U__CGC_______U_____AA-5'\n_____________|_______________________________|\n_____________34______________________________2\n |
129 -- 135 |
27 -- 33 |
-21.9416 kcal/mol |
5.52555 kcal/mol |
8.59196 kcal/mol |
128 158@LB@ | |@LB@5'-CGG...UACCA UUA AAA CUUUG...UUA-3'@LB@ AGAAGUU CC UG UUAGAAU CCAGC@LB@ |||||:| || || ||||||| |||:|@LB@ UCUUCGA GG AC AAUCUUA GGUUG@LB@3'-UUU...CUCAG UAA U CGC U AA-5'@LB@ | |@LB@ 34 2@LB@@LB@@LB@Energy -7.82 kcal/mol@LB@Hybridization Energy -21.9416 kcal/mol@LB@Unfolding Energy - mRNA 5.52555 kcal/mol@LB@Unfolding Energy - sRNA 8.59196 kcal/mol@LB@@LB@Position - mRNA 129 -- 157@LB@Position - sRNA 3 -- 33@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 27 -- 33@LB@ |
113 |
0.04597 |
0.3262 |
ct_841 |
ftsH |
-6.80 |
0.159029 |
200 -- 207 |
80 -- 87 |
ATP-dependent zinc metalloprotease FtsH |
|
_____________199______208\n_____________|________|\n5'-GGU...AGUUU________AAGAU...UUC-3'\n______________UAUGGCUA\n______________||:|||||\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
200 -- 206 |
81 -- 87 |
-10.6438 kcal/mol |
2.74436 kcal/mol |
1.09752 kcal/mol |
199 208@LB@ | |@LB@5'-GGU...AGUUU AAGAU...UUC-3'@LB@ UAUGGCUA@LB@ ||:|||||@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -6.80 kcal/mol@LB@Hybridization Energy -10.6438 kcal/mol@LB@Unfolding Energy - mRNA 2.74436 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 200 -- 207@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 81 -- 87@LB@ |
114 |
0.04665 |
0.3262 |
ct_848 |
N/A |
-8.83 |
0.054442 |
279 -- 286 |
79 -- 86 |
|
|
_____________278______287\n_____________|________|\n5'-CAA...CUGCA________UGAGA...CAC-3'\n______________ACGGCUGA\n______________||||||:|\n______________UGCCGAUU\n3'-UUU...CUCUA________GAGGU...GAA-5'\n_____________|________|\n_____________87_______78\n |
280 -- 286 |
79 -- 85 |
-11.4013 kcal/mol |
1.46996 kcal/mol |
1.09752 kcal/mol |
278 287@LB@ | |@LB@5'-CAA...CUGCA UGAGA...CAC-3'@LB@ ACGGCUGA@LB@ ||||||:|@LB@ UGCCGAUU@LB@3'-UUU...CUCUA GAGGU...GAA-5'@LB@ | |@LB@ 87 78@LB@@LB@@LB@Energy -8.83 kcal/mol@LB@Hybridization Energy -11.4013 kcal/mol@LB@Unfolding Energy - mRNA 1.46996 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 279 -- 286@LB@Position - sRNA 79 -- 86@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 79 -- 85@LB@ |
115 |
0.04794 |
0.3262 |
ct_778 |
priA |
-6.05 |
0.227860 |
46 -- 52 |
54 -- 60 |
primosomal protein N' |
|
_____________45______53\n_____________|_______|\n5'-CGC...GUCAU_______AUCCU...AAA-3'\n______________UCCCCUC\n______________|||||:|\n______________AGGGGGG\n3'-UUU...ACUGA_______ACACA...GAA-5'\n_____________|_______|\n_____________61______53\n |
46 -- 52 |
54 -- 60 |
-12.5948 kcal/mol |
0.0982726 kcal/mol |
6.44182 kcal/mol |
45 53@LB@ | |@LB@5'-CGC...GUCAU AUCCU...AAA-3'@LB@ UCCCCUC@LB@ |||||:|@LB@ AGGGGGG@LB@3'-UUU...ACUGA ACACA...GAA-5'@LB@ | |@LB@ 61 53@LB@@LB@@LB@Energy -6.05 kcal/mol@LB@Hybridization Energy -12.5948 kcal/mol@LB@Unfolding Energy - mRNA 0.0982726 kcal/mol@LB@Unfolding Energy - sRNA 6.44182 kcal/mol@LB@@LB@Position - mRNA 46 -- 52@LB@Position - sRNA 54 -- 60@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 54 -- 60@LB@ |
116 |
0.04833 |
0.3262 |
ct_570 |
gspF |
-8.17 |
0.078365 |
199 -- 207 |
80 -- 88 |
type II secretion system protein F |
|
_____________198_______208\n_____________|_________|\n5'-AUC...AGGGG_________GGUUU...CUG-3'\n______________AUAUGGCUA\n______________|||:|||||\n______________UAUGCCGAU\n3'-UUU...GCCUC_________UGAGG...GAA-5'\n_____________|_________|\n_____________89________79\n |
201 -- 207 |
80 -- 86 |
-11.0443 kcal/mol |
1.77912 kcal/mol |
1.09753 kcal/mol |
198 208@LB@ | |@LB@5'-AUC...AGGGG GGUUU...CUG-3'@LB@ AUAUGGCUA@LB@ |||:|||||@LB@ UAUGCCGAU@LB@3'-UUU...GCCUC UGAGG...GAA-5'@LB@ | |@LB@ 89 79@LB@@LB@@LB@Energy -8.17 kcal/mol@LB@Hybridization Energy -11.0443 kcal/mol@LB@Unfolding Energy - mRNA 1.77912 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 199 -- 207@LB@Position - sRNA 80 -- 88@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 80 -- 86@LB@ |
117 |
0.04834 |
0.3262 |
ct_237 |
fabG |
-8.76 |
0.056710 |
143 -- 164 |
34 -- 58 |
3-oxoacyl-[acyl-carrier-protein] reductase |
|
_____________142________________________165\n_____________|__________________________|\n5'-CGU...GAGUU_________________U________UAUGG...AUG-3'\n______________CCCCUUGU____AAACA_UUAGGGUC\n______________||||:|||____|||||_:|||:|||\n______________GGGGGACA____UUUGU_GAUCUCAG\n3'-UUU...UGAAG________CAUG______________UCUUC...GAA-5'\n_____________|__________________________|\n_____________59_________________________33\n |
144 -- 150 |
51 -- 57 |
-24.3621 kcal/mol |
7.62467 kcal/mol |
7.97757 kcal/mol |
142 165@LB@ | |@LB@5'-CGU...GAGUU U UAUGG...AUG-3'@LB@ CCCCUUGU AAACA UUAGGGUC@LB@ ||||:||| ||||| :|||:|||@LB@ GGGGGACA UUUGU GAUCUCAG@LB@3'-UUU...UGAAG CAUG UCUUC...GAA-5'@LB@ | |@LB@ 59 33@LB@@LB@@LB@Energy -8.76 kcal/mol@LB@Hybridization Energy -24.3621 kcal/mol@LB@Unfolding Energy - mRNA 7.62467 kcal/mol@LB@Unfolding Energy - sRNA 7.97757 kcal/mol@LB@@LB@Position - mRNA 143 -- 164@LB@Position - sRNA 34 -- 58@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 51 -- 57@LB@ |
118 |
0.04846 |
0.3262 |
ct_515 |
rs8 |
-12.50 |
0.006183 |
13 -- 43 |
3 -- 33 |
30S ribosomal protein S8 |
|
_____________12_______________________________44\n_____________|________________________________|\n5'-GGA...GACGA___U________UU__________UG______AAAUC...UGC-3'\n______________GGA_GUUAUUCC__UGGU_UUAGA__AUCAGC\n______________:||_|:||||||__|||:_|||||__|:||:|\n______________UCU_CGAUAAGG__ACCG_AAUCU__UGGUUG\n3'-UUU...CUCAG___U________U_____C_____UA______AA-5'\n_____________|________________________________|\n_____________34_______________________________2\n |
18 -- 24 |
22 -- 28 |
-29.6343 kcal/mol |
8.5463 kcal/mol |
8.59196 kcal/mol |
12 44@LB@ | |@LB@5'-GGA...GACGA U UU UG AAAUC...UGC-3'@LB@ GGA GUUAUUCC UGGU UUAGA AUCAGC@LB@ :|| |:|||||| |||: ||||| |:||:|@LB@ UCU CGAUAAGG ACCG AAUCU UGGUUG@LB@3'-UUU...CUCAG U U C UA AA-5'@LB@ | |@LB@ 34 2@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -29.6343 kcal/mol@LB@Unfolding Energy - mRNA 8.5463 kcal/mol@LB@Unfolding Energy - sRNA 8.59196 kcal/mol@LB@@LB@Position - mRNA 13 -- 43@LB@Position - sRNA 3 -- 33@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 22 -- 28@LB@ |
119 |
0.04857 |
0.3262 |
ct_706 |
clpP_2 |
-8.60 |
0.061801 |
14 -- 27 |
22 -- 35 |
ATP-dependent Clp protease proteolytic subunit |
|
_____________13_____________28\n_____________|______________|\n5'-CGA...AAGAU______________UUCUU...GGC-3'\n______________UUAGAGGUUGUUCC\n______________|:|||:|:|:||||\n______________AGUCUUCGAUAAGG\n3'-UUU...AUCUC______________UACCG...GAA-5'\n_____________|______________|\n_____________36_____________21\n |
16 -- 22 |
27 -- 33 |
-17.9181 kcal/mol |
4.58788 kcal/mol |
4.72627 kcal/mol |
13 28@LB@ | |@LB@5'-CGA...AAGAU UUCUU...GGC-3'@LB@ UUAGAGGUUGUUCC@LB@ |:|||:|:|:||||@LB@ AGUCUUCGAUAAGG@LB@3'-UUU...AUCUC UACCG...GAA-5'@LB@ | |@LB@ 36 21@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -17.9181 kcal/mol@LB@Unfolding Energy - mRNA 4.58788 kcal/mol@LB@Unfolding Energy - sRNA 4.72627 kcal/mol@LB@@LB@Position - mRNA 14 -- 27@LB@Position - sRNA 22 -- 35@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 27 -- 33@LB@ |
120 |
0.04883 |
0.3262 |
ct_827 |
nrdA |
-5.19 |
0.334730 |
7 -- 13 |
82 -- 88 |
ribonucleoside-diphosphate reductase subunit alpha |
|
_____________6_______14\n_____________|_______|\n_____5'-UUCUAU_______AUACA...CUU-3'\n______________AUAUGGU\n______________|||:||:\n______________UAUGCCG\n3'-UUU...GCCUC_______AUUGA...GAA-5'\n_____________|_______|\n_____________89______81\n |
7 -- 13 |
82 -- 88 |
-6.89581 kcal/mol |
0.608866 kcal/mol |
1.09753 kcal/mol |
6 14@LB@ | |@LB@ 5'-UUCUAU AUACA...CUU-3'@LB@ AUAUGGU@LB@ |||:||:@LB@ UAUGCCG@LB@3'-UUU...GCCUC AUUGA...GAA-5'@LB@ | |@LB@ 89 81@LB@@LB@@LB@Energy -5.19 kcal/mol@LB@Hybridization Energy -6.89581 kcal/mol@LB@Unfolding Energy - mRNA 0.608866 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 7 -- 13@LB@Position - sRNA 82 -- 88@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 82 -- 88@LB@ |
121 |
0.04894 |
0.3262 |
ct_310 |
atpE |
-7.64 |
0.103947 |
27 -- 34 |
80 -- 87 |
V-type ATP synthase subunit E |
|
_____________26_______35\n_____________|________|\n5'-GCA...CCUUC________CCUUC...UUC-3'\n______________UACGGCUG\n______________|||||||:\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
28 -- 34 |
80 -- 86 |
-11.9035 kcal/mol |
3.17039 kcal/mol |
1.09752 kcal/mol |
26 35@LB@ | |@LB@5'-GCA...CCUUC CCUUC...UUC-3'@LB@ UACGGCUG@LB@ |||||||:@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -7.64 kcal/mol@LB@Hybridization Energy -11.9035 kcal/mol@LB@Unfolding Energy - mRNA 3.17039 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 27 -- 34@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 80 -- 86@LB@ |
122 |
0.04895 |
0.3262 |
ct_683 |
N/A |
-8.21 |
0.076506 |
46 -- 53 |
80 -- 87 |
|
|
_____________45_______54\n_____________|________|\n5'-AAG...GUACU________GGAGA...AAG-3'\n______________UACGGCUA\n______________||||||||\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
47 -- 53 |
80 -- 86 |
-12.375 kcal/mol |
3.06531 kcal/mol |
1.09752 kcal/mol |
45 54@LB@ | |@LB@5'-AAG...GUACU GGAGA...AAG-3'@LB@ UACGGCUA@LB@ ||||||||@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -8.21 kcal/mol@LB@Hybridization Energy -12.375 kcal/mol@LB@Unfolding Energy - mRNA 3.06531 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 46 -- 53@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 80 -- 86@LB@ |
123 |
0.04914 |
0.3262 |
ct_754 |
icc |
-7.18 |
0.131374 |
254 -- 264 |
47 -- 57 |
|
|
_____________253_________265\n_____________|___________|\n5'-AUU...AUUCA___________UCCCU...GCU-3'\n______________CUUCUGUGUAC\n______________|::||||||||\n______________GGGGACACAUG\n3'-UUU...GAAGG___________UUUGU...GAA-5'\n_____________|___________|\n_____________58__________46\n |
258 -- 264 |
47 -- 53 |
-16.923 kcal/mol |
2.45356 kcal/mol |
7.2877 kcal/mol |
253 265@LB@ | |@LB@5'-AUU...AUUCA UCCCU...GCU-3'@LB@ CUUCUGUGUAC@LB@ |::||||||||@LB@ GGGGACACAUG@LB@3'-UUU...GAAGG UUUGU...GAA-5'@LB@ | |@LB@ 58 46@LB@@LB@@LB@Energy -7.18 kcal/mol@LB@Hybridization Energy -16.923 kcal/mol@LB@Unfolding Energy - mRNA 2.45356 kcal/mol@LB@Unfolding Energy - sRNA 7.2877 kcal/mol@LB@@LB@Position - mRNA 254 -- 264@LB@Position - sRNA 47 -- 57@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 47 -- 53@LB@ |
124 |
0.04963 |
0.3262 |
ct_290 |
ptsN_1 |
-8.82 |
0.054773 |
1 -- 15 |
18 -- 32 |
PTS fructose transporter subunit IIA |
|
______________1______________16\n______________|______________|\n___________5'-____G__________GAUGC...UUA-3'\n______________GAGG_UAUUUUGUGG\n______________||:|_||||:::|||\n______________CUUC_AUAAGGUACC\n3'-UUU...UCAGU____G__________GCAAU...GAA-5'\n_____________|_______________|\n_____________33______________17\n |
9 -- 15 |
18 -- 24 |
-16.4794 kcal/mol |
2.69105 kcal/mol |
4.96566 kcal/mol |
1 16@LB@ | |@LB@ 5'- G GAUGC...UUA-3'@LB@ GAGG UAUUUUGUGG@LB@ ||:| ||||:::|||@LB@ CUUC AUAAGGUACC@LB@3'-UUU...UCAGU G GCAAU...GAA-5'@LB@ | |@LB@ 33 17@LB@@LB@@LB@Energy -8.82 kcal/mol@LB@Hybridization Energy -16.4794 kcal/mol@LB@Unfolding Energy - mRNA 2.69105 kcal/mol@LB@Unfolding Energy - sRNA 4.96566 kcal/mol@LB@@LB@Position - mRNA 1 -- 15@LB@Position - sRNA 18 -- 32@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 18 -- 24@LB@ |
125 |
0.05005 |
0.3262 |
ct_644 |
yohI |
-5.25 |
0.326074 |
256 -- 262 |
53 -- 59 |
tRNA-dihydrouridine synthase |
|
_____________255_____263\n_____________|_______|\n5'-CUG...CUACG_______AGCGG...CGG-3'\n______________CCCCCUU\n______________|||||:|\n______________GGGGGGA\n3'-UUU...CUGAA_______CACAU...GAA-5'\n_____________|_______|\n_____________60______52\n |
256 -- 262 |
53 -- 59 |
-11.5527 kcal/mol |
0.822659 kcal/mol |
5.47887 kcal/mol |
255 263@LB@ | |@LB@5'-CUG...CUACG AGCGG...CGG-3'@LB@ CCCCCUU@LB@ |||||:|@LB@ GGGGGGA@LB@3'-UUU...CUGAA CACAU...GAA-5'@LB@ | |@LB@ 60 52@LB@@LB@@LB@Energy -5.25 kcal/mol@LB@Hybridization Energy -11.5527 kcal/mol@LB@Unfolding Energy - mRNA 0.822659 kcal/mol@LB@Unfolding Energy - sRNA 5.47887 kcal/mol@LB@@LB@Position - mRNA 256 -- 262@LB@Position - sRNA 53 -- 59@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 53 -- 59@LB@ |
126 |
0.05087 |
0.3262 |
ct_474 |
N/A |
-6.92 |
0.149609 |
150 -- 156 |
15 -- 21 |
|
|
_____________149_____157\n_____________|_______|\n5'-AAA...ACGAA_______GUAUA...UAU-3'\n______________GUGGCGU\n______________:||||||\n______________UACCGCA\n3'-UUU...UAAGG_______AUCUU...GAA-5'\n_____________|_______|\n_____________22______14\n |
150 -- 156 |
15 -- 21 |
-10.3963 kcal/mol |
2.28336 kcal/mol |
1.18845 kcal/mol |
149 157@LB@ | |@LB@5'-AAA...ACGAA GUAUA...UAU-3'@LB@ GUGGCGU@LB@ :||||||@LB@ UACCGCA@LB@3'-UUU...UAAGG AUCUU...GAA-5'@LB@ | |@LB@ 22 14@LB@@LB@@LB@Energy -6.92 kcal/mol@LB@Hybridization Energy -10.3963 kcal/mol@LB@Unfolding Energy - mRNA 2.28336 kcal/mol@LB@Unfolding Energy - sRNA 1.18845 kcal/mol@LB@@LB@Position - mRNA 150 -- 156@LB@Position - sRNA 15 -- 21@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 15 -- 21@LB@ |
127 |
0.0509 |
0.3262 |
ct_808 |
cafE |
-7.80 |
0.095102 |
169 -- 204 |
18 -- 57 |
ribonuclease E |
|
_____________168_________________________________________205\n_____________|___________________________________________|\n5'-GUU...GAGGA_______A______________CAU______ACG_________AAAAC...AAA-3'\n______________CUCCUGU____GAGCGC_AGAG___UUAGGA______CCAUGG\n______________|:|||||____:|:|:|_||||___|:||:|______||||||\n______________GGGGACA____UUUGUG_UCUC___AGUCUU______GGUACC\n3'-UUU...GAAGG_______CAUG______A_____________CGAUAA______GCAAU...GAA-5'\n_____________|___________________________________________|\n_____________58__________________________________________17\n |
169 -- 175 |
51 -- 57 |
-30.1775 kcal/mol |
9.43695 kcal/mol |
12.9362 kcal/mol |
168 205@LB@ | |@LB@5'-GUU...GAGGA A CAU ACG AAAAC...AAA-3'@LB@ CUCCUGU GAGCGC AGAG UUAGGA CCAUGG@LB@ |:||||| :|:|:| |||| |:||:| ||||||@LB@ GGGGACA UUUGUG UCUC AGUCUU GGUACC@LB@3'-UUU...GAAGG CAUG A CGAUAA GCAAU...GAA-5'@LB@ | |@LB@ 58 17@LB@@LB@@LB@Energy -7.80 kcal/mol@LB@Hybridization Energy -30.1775 kcal/mol@LB@Unfolding Energy - mRNA 9.43695 kcal/mol@LB@Unfolding Energy - sRNA 12.9362 kcal/mol@LB@@LB@Position - mRNA 169 -- 204@LB@Position - sRNA 18 -- 57@LB@Position Seed - mRNA 169 -- 175@LB@Position Seed - sRNA 51 -- 57@LB@ |
128 |
0.05098 |
0.3262 |
ct_279 |
nqr3 |
-7.28 |
0.125274 |
283 -- 291 |
51 -- 59 |
Na(+)-translocating NADH-quinone reductase subunit C |
|
_____________282_______292\n_____________|_________|\n5'-CCG...UGGUA_________CUUCU...UGU-3'\n______________CCCUCCUGU\n______________|||:|||||\n______________GGGGGGACA\n3'-UUU...CUGAA_________CAUGU...GAA-5'\n_____________|_________|\n_____________60________50\n |
285 -- 291 |
51 -- 57 |
-15.9842 kcal/mol |
0.606269 kcal/mol |
8.10291 kcal/mol |
282 292@LB@ | |@LB@5'-CCG...UGGUA CUUCU...UGU-3'@LB@ CCCUCCUGU@LB@ |||:|||||@LB@ GGGGGGACA@LB@3'-UUU...CUGAA CAUGU...GAA-5'@LB@ | |@LB@ 60 50@LB@@LB@@LB@Energy -7.28 kcal/mol@LB@Hybridization Energy -15.9842 kcal/mol@LB@Unfolding Energy - mRNA 0.606269 kcal/mol@LB@Unfolding Energy - sRNA 8.10291 kcal/mol@LB@@LB@Position - mRNA 283 -- 291@LB@Position - sRNA 51 -- 59@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 51 -- 57@LB@ |
129 |
0.0523 |
0.3262 |
ct_872 |
pmpH |
-6.76 |
0.162049 |
85 -- 103 |
18 -- 34 |
outer membrane protein PmpH |
|
_____________84__________________104\n_____________|___________________|\n5'-AGA...CAAUA_______A___GG______AAGAU...AUG-3'\n______________UAGAAGU_UAU__CCAUGG\n______________:|||||:_|||__||||||\n______________GUCUUCG_AUA__GGUACC\n3'-UUU...UCUCA___________A_______GCAAU...GAA-5'\n_____________|___________________|\n_____________35__________________17\n |
85 -- 91 |
28 -- 34 |
-16.9306 kcal/mol |
5.18888 kcal/mol |
4.97803 kcal/mol |
84 104@LB@ | |@LB@5'-AGA...CAAUA A GG AAGAU...AUG-3'@LB@ UAGAAGU UAU CCAUGG@LB@ :|||||: ||| ||||||@LB@ GUCUUCG AUA GGUACC@LB@3'-UUU...UCUCA A GCAAU...GAA-5'@LB@ | |@LB@ 35 17@LB@@LB@@LB@Energy -6.76 kcal/mol@LB@Hybridization Energy -16.9306 kcal/mol@LB@Unfolding Energy - mRNA 5.18888 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 85 -- 103@LB@Position - sRNA 18 -- 34@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 28 -- 34@LB@ |
130 |
0.05252 |
0.3262 |
ct_826 |
pssA |
-5.40 |
0.306560 |
126 -- 136 |
23 -- 33 |
CDP-diacylglycerol--serine O-phosphatidyltransferase |
|
_____________125_________137\n_____________|___________|\n5'-AUA...UAAAA_______UC__AACAA...UCA-3'\n______________AGAAGCU__UC\n______________|||||||__||\n______________UCUUCGA__AG\n3'-UUU...CUCAG_______UA__GUACC...GAA-5'\n_____________|___________|\n_____________34__________22\n |
126 -- 132 |
27 -- 33 |
-11.4676 kcal/mol |
1.34949 kcal/mol |
4.72321 kcal/mol |
125 137@LB@ | |@LB@5'-AUA...UAAAA UC AACAA...UCA-3'@LB@ AGAAGCU UC@LB@ ||||||| ||@LB@ UCUUCGA AG@LB@3'-UUU...CUCAG UA GUACC...GAA-5'@LB@ | |@LB@ 34 22@LB@@LB@@LB@Energy -5.40 kcal/mol@LB@Hybridization Energy -11.4676 kcal/mol@LB@Unfolding Energy - mRNA 1.34949 kcal/mol@LB@Unfolding Energy - sRNA 4.72321 kcal/mol@LB@@LB@Position - mRNA 126 -- 136@LB@Position - sRNA 23 -- 33@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 27 -- 33@LB@ |
131 |
0.05291 |
0.3262 |
ct_842 |
pnp |
-7.97 |
0.086989 |
198 -- 205 |
17 -- 24 |
polyribonucleotide nucleotidyltransferase |
|
_____________197______206\n_____________|________|\n5'-UGA...ACAAC________UUUUG...UCA-3'\n______________UCCAUGGC\n______________||||||||\n______________AGGUACCG\n3'-UUU...CGAUA________CAAUC...GAA-5'\n_____________|________|\n_____________25_______16\n |
199 -- 205 |
17 -- 23 |
-14.0999 kcal/mol |
1.64992 kcal/mol |
4.47615 kcal/mol |
197 206@LB@ | |@LB@5'-UGA...ACAAC UUUUG...UCA-3'@LB@ UCCAUGGC@LB@ ||||||||@LB@ AGGUACCG@LB@3'-UUU...CGAUA CAAUC...GAA-5'@LB@ | |@LB@ 25 16@LB@@LB@@LB@Energy -7.97 kcal/mol@LB@Hybridization Energy -14.0999 kcal/mol@LB@Unfolding Energy - mRNA 1.64992 kcal/mol@LB@Unfolding Energy - sRNA 4.47615 kcal/mol@LB@@LB@Position - mRNA 198 -- 205@LB@Position - sRNA 17 -- 24@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 17 -- 23@LB@ |
132 |
0.05402 |
0.3262 |
ct_150 |
rl33 |
-5.54 |
0.287166 |
186 -- 205 |
17 -- 33 |
50S ribosomal protein L33 |
|
_____________185__________________206\n_____________|____________________|\n5'-CUC...UCUUG___AAA____CA________CAGCA...UAG-3'\n______________AGA___GGUU__UUCAUGGC\n______________|||___:|:|__|:||||||\n______________UCU___UCGA__AGGUACCG\n3'-UUU...CUCAG__________UA________CAAUC...GAA-5'\n_____________|____________________|\n_____________34___________________16\n |
199 -- 205 |
17 -- 23 |
-14.3817 kcal/mol |
3.85921 kcal/mol |
4.97804 kcal/mol |
185 206@LB@ | |@LB@5'-CUC...UCUUG AAA CA CAGCA...UAG-3'@LB@ AGA GGUU UUCAUGGC@LB@ ||| :|:| |:||||||@LB@ UCU UCGA AGGUACCG@LB@3'-UUU...CUCAG UA CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -5.54 kcal/mol@LB@Hybridization Energy -14.3817 kcal/mol@LB@Unfolding Energy - mRNA 3.85921 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 186 -- 205@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 17 -- 23@LB@ |
133 |
0.05414 |
0.3262 |
ct_059 |
fer |
-7.78 |
0.096344 |
200 -- 207 |
80 -- 87 |
ferredoxin |
|
_____________199______208\n_____________|________|\n5'-UUC...AGUCC________AGCUC...CUU-3'\n______________UAUGGCUA\n______________||:|||||\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
200 -- 206 |
81 -- 87 |
-10.7757 kcal/mol |
1.8981 kcal/mol |
1.09752 kcal/mol |
199 208@LB@ | |@LB@5'-UUC...AGUCC AGCUC...CUU-3'@LB@ UAUGGCUA@LB@ ||:|||||@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -7.78 kcal/mol@LB@Hybridization Energy -10.7757 kcal/mol@LB@Unfolding Energy - mRNA 1.8981 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 200 -- 207@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 81 -- 87@LB@ |
134 |
0.05433 |
0.3262 |
ct_581 |
thrS |
-7.17 |
0.132364 |
52 -- 64 |
21 -- 33 |
threonine--tRNA ligase |
|
_____________51___________65\n_____________|____________|\n5'-AAA...CUAAA_______CC___GAACU...CAG-3'\n______________AGAAGCU__UCC\n______________|||||||__|||\n______________UCUUCGA__AGG\n3'-UUU...CUCAG_______UA___UACCG...GAA-5'\n_____________|____________|\n_____________34___________20\n |
52 -- 58 |
27 -- 33 |
-13.855 kcal/mol |
1.83194 kcal/mol |
4.72509 kcal/mol |
51 65@LB@ | |@LB@5'-AAA...CUAAA CC GAACU...CAG-3'@LB@ AGAAGCU UCC@LB@ ||||||| |||@LB@ UCUUCGA AGG@LB@3'-UUU...CUCAG UA UACCG...GAA-5'@LB@ | |@LB@ 34 20@LB@@LB@@LB@Energy -7.17 kcal/mol@LB@Hybridization Energy -13.855 kcal/mol@LB@Unfolding Energy - mRNA 1.83194 kcal/mol@LB@Unfolding Energy - sRNA 4.72509 kcal/mol@LB@@LB@Position - mRNA 52 -- 64@LB@Position - sRNA 21 -- 33@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 27 -- 33@LB@ |
135 |
0.05472 |
0.3262 |
ct_283 |
N/A |
-6.89 |
0.152000 |
262 -- 284 |
14 -- 35 |
|
|
_____________261______________________285\n_____________|________________________|\n5'-UAC...GUUUA_____CU________GC_______UGUUU...UUG-3'\n______________UCGGA__AGUUA_UC__UGGCGUU\n______________||:||__||:||_||__|||||||\n______________AGUCU__UCGAU_AG__ACCGCAA\n3'-UUU...AUCUC____________A__GU_______UCUUA...GAA-5'\n_____________|________________________|\n_____________36_______________________13\n |
278 -- 284 |
14 -- 20 |
-19.9844 kcal/mol |
4.64246 kcal/mol |
8.44936 kcal/mol |
261 285@LB@ | |@LB@5'-UAC...GUUUA CU GC UGUUU...UUG-3'@LB@ UCGGA AGUUA UC UGGCGUU@LB@ ||:|| ||:|| || |||||||@LB@ AGUCU UCGAU AG ACCGCAA@LB@3'-UUU...AUCUC A GU UCUUA...GAA-5'@LB@ | |@LB@ 36 13@LB@@LB@@LB@Energy -6.89 kcal/mol@LB@Hybridization Energy -19.9844 kcal/mol@LB@Unfolding Energy - mRNA 4.64246 kcal/mol@LB@Unfolding Energy - sRNA 8.44936 kcal/mol@LB@@LB@Position - mRNA 262 -- 284@LB@Position - sRNA 14 -- 35@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 14 -- 20@LB@ |
136 |
0.05474 |
0.3262 |
ct_592 |
sdhA |
-7.43 |
0.115894 |
38 -- 56 |
18 -- 34 |
succinate dehydrogenase flavoprotein subunit |
|
_____________37__________________57\n_____________|___________________|\n5'-UCU...UGUUA___CU_____UU_______GUUUA...UGU-3'\n______________UAG__GCUGU__UCCAUGG\n______________:||__|||:|__|||||||\n______________GUC__CGAUA__AGGUACC\n3'-UUU...UCUCA___UU______________GCAAU...GAA-5'\n_____________|___________________|\n_____________35__________________17\n |
50 -- 56 |
18 -- 24 |
-18.2308 kcal/mol |
5.82664 kcal/mol |
4.97803 kcal/mol |
37 57@LB@ | |@LB@5'-UCU...UGUUA CU UU GUUUA...UGU-3'@LB@ UAG GCUGU UCCAUGG@LB@ :|| |||:| |||||||@LB@ GUC CGAUA AGGUACC@LB@3'-UUU...UCUCA UU GCAAU...GAA-5'@LB@ | |@LB@ 35 17@LB@@LB@@LB@Energy -7.43 kcal/mol@LB@Hybridization Energy -18.2308 kcal/mol@LB@Unfolding Energy - mRNA 5.82664 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 38 -- 56@LB@Position - sRNA 18 -- 34@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 18 -- 24@LB@ |
137 |
0.05536 |
0.3262 |
ct_389 |
N/A |
-5.69 |
0.269629 |
175 -- 181 |
80 -- 86 |
|
|
_____________174_____182\n_____________|_______|\n5'-GUU...AUAAC_______UCUCA...GCC-3'\n______________GCGGCUG\n______________:|||||:\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
175 -- 181 |
80 -- 86 |
-10.4159 kcal/mol |
3.66497 kcal/mol |
1.06449 kcal/mol |
174 182@LB@ | |@LB@5'-GUU...AUAAC UCUCA...GCC-3'@LB@ GCGGCUG@LB@ :|||||:@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -5.69 kcal/mol@LB@Hybridization Energy -10.4159 kcal/mol@LB@Unfolding Energy - mRNA 3.66497 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 175 -- 181@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 80 -- 86@LB@ |
138 |
0.05554 |
0.3262 |
ct_806 |
ptr |
-4.69 |
0.410459 |
54 -- 70 |
19 -- 33 |
insulinase/protease |
|
_____________53________________71\n_____________|_________________|\n5'-GUU...UCCGA________AUAUA____AUAAA...UAA-3'\n______________AGAAGCUG_____CAUG\n______________|||||||:_____||||\n______________UCUUCGAU_____GUAC\n3'-UUU...CUCAG________AAG______CGCAA...GAA-5'\n_____________|_________________|\n_____________34________________18\n |
55 -- 61 |
26 -- 32 |
-13.627 kcal/mol |
3.96302 kcal/mol |
4.97702 kcal/mol |
53 71@LB@ | |@LB@5'-GUU...UCCGA AUAUA AUAAA...UAA-3'@LB@ AGAAGCUG CAUG@LB@ |||||||: ||||@LB@ UCUUCGAU GUAC@LB@3'-UUU...CUCAG AAG CGCAA...GAA-5'@LB@ | |@LB@ 34 18@LB@@LB@@LB@Energy -4.69 kcal/mol@LB@Hybridization Energy -13.627 kcal/mol@LB@Unfolding Energy - mRNA 3.96302 kcal/mol@LB@Unfolding Energy - sRNA 4.97702 kcal/mol@LB@@LB@Position - mRNA 54 -- 70@LB@Position - sRNA 19 -- 33@LB@Position Seed - mRNA 55 -- 61@LB@Position Seed - sRNA 26 -- 32@LB@ |
139 |
0.05609 |
0.3262 |
ct_291 |
ptsN_2 |
-9.13 |
0.046270 |
268 -- 291 |
36 -- 59 |
PTS fructose transporter subunit IIA |
|
_____________267______________________292\n_____________|________________________|\n5'-UGU...AAUCA_______ACAUU____________AAGAU...UCC-3'\n______________CUUUCUU_____CAGAUACUAGAG\n______________|:::|:|_____||:|:|||||||\n______________GGGGGGA_____GUUUGUGAUCUC\n3'-UUU...CUGAA_______CACAU____________AGUCU...GAA-5'\n_____________|________________________|\n_____________60_______________________35\n |
285 -- 291 |
36 -- 42 |
-20.1073 kcal/mol |
2.01119 kcal/mol |
8.97132 kcal/mol |
267 292@LB@ | |@LB@5'-UGU...AAUCA ACAUU AAGAU...UCC-3'@LB@ CUUUCUU CAGAUACUAGAG@LB@ |:::|:| ||:|:|||||||@LB@ GGGGGGA GUUUGUGAUCUC@LB@3'-UUU...CUGAA CACAU AGUCU...GAA-5'@LB@ | |@LB@ 60 35@LB@@LB@@LB@Energy -9.13 kcal/mol@LB@Hybridization Energy -20.1073 kcal/mol@LB@Unfolding Energy - mRNA 2.01119 kcal/mol@LB@Unfolding Energy - sRNA 8.97132 kcal/mol@LB@@LB@Position - mRNA 268 -- 291@LB@Position - sRNA 36 -- 59@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 36 -- 42@LB@ |
140 |
0.05617 |
0.3262 |
ct_759 |
nlpD |
-2.72 |
0.757894 |
26 -- 32 |
51 -- 57 |
muramidase |
|
_____________25______33\n_____________|_______|\n5'-GAG...AGAGU_______AACCG...AGU-3'\n______________UCCCUGU\n______________:||||||\n______________GGGGACA\n3'-UUU...GAAGG_______CAUGU...GAA-5'\n_____________|_______|\n_____________58______50\n |
26 -- 32 |
51 -- 57 |
-10.8083 kcal/mol |
0.989353 kcal/mol |
7.09845 kcal/mol |
25 33@LB@ | |@LB@5'-GAG...AGAGU AACCG...AGU-3'@LB@ UCCCUGU@LB@ :||||||@LB@ GGGGACA@LB@3'-UUU...GAAGG CAUGU...GAA-5'@LB@ | |@LB@ 58 50@LB@@LB@@LB@Energy -2.72 kcal/mol@LB@Hybridization Energy -10.8083 kcal/mol@LB@Unfolding Energy - mRNA 0.989353 kcal/mol@LB@Unfolding Energy - sRNA 7.09845 kcal/mol@LB@@LB@Position - mRNA 26 -- 32@LB@Position - sRNA 51 -- 57@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 51 -- 57@LB@ |
141 |
0.05655 |
0.3262 |
ct_645 |
N/A |
-6.85 |
0.155161 |
266 -- 276 |
17 -- 28 |
|
|
_____________265__________277\n_____________|____________|\n5'-GAG...GUUCU____________UGCCA...AGU-3'\n______________UUGUUCC_UGGC\n______________:|:||||_||||\n______________GAUAAGG_ACCG\n3'-UUU...UCUUC_______U____CAAUC...GAA-5'\n_____________|____________|\n_____________29___________16\n |
266 -- 272 |
22 -- 28 |
-12.7306 kcal/mol |
1.25811 kcal/mol |
4.62088 kcal/mol |
265 277@LB@ | |@LB@5'-GAG...GUUCU UGCCA...AGU-3'@LB@ UUGUUCC UGGC@LB@ :|:|||| ||||@LB@ GAUAAGG ACCG@LB@3'-UUU...UCUUC U CAAUC...GAA-5'@LB@ | |@LB@ 29 16@LB@@LB@@LB@Energy -6.85 kcal/mol@LB@Hybridization Energy -12.7306 kcal/mol@LB@Unfolding Energy - mRNA 1.25811 kcal/mol@LB@Unfolding Energy - sRNA 4.62088 kcal/mol@LB@@LB@Position - mRNA 266 -- 276@LB@Position - sRNA 17 -- 28@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 22 -- 28@LB@ |
142 |
0.0566 |
0.3262 |
ct_284 |
N/A |
-6.95 |
0.147726 |
278 -- 292 |
18 -- 30 |
phospholipase D |
|
_____________277_____________293\n_____________|_______________|\n5'-AUC...ACUAU_________GG____AGACAAAA-3'\n______________AGCUAUUCC__AUGG\n______________|||||||||__||||\n______________UCGAUAAGG__UACC\n3'-UUU...AGUCU_______________GCAAU...GAA-5'\n_____________|_______________|\n_____________31______________17\n |
280 -- 286 |
22 -- 28 |
-16.5616 kcal/mol |
4.87795 kcal/mol |
4.73403 kcal/mol |
277 293@LB@ | |@LB@5'-AUC...ACUAU GG AGACAAAA-3'@LB@ AGCUAUUCC AUGG@LB@ ||||||||| ||||@LB@ UCGAUAAGG UACC@LB@3'-UUU...AGUCU GCAAU...GAA-5'@LB@ | |@LB@ 31 17@LB@@LB@@LB@Energy -6.95 kcal/mol@LB@Hybridization Energy -16.5616 kcal/mol@LB@Unfolding Energy - mRNA 4.87795 kcal/mol@LB@Unfolding Energy - sRNA 4.73403 kcal/mol@LB@@LB@Position - mRNA 278 -- 292@LB@Position - sRNA 18 -- 30@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 22 -- 28@LB@ |
143 |
0.05698 |
0.3262 |
ct_451 |
cdsA |
-5.69 |
0.268983 |
146 -- 169 |
3 -- 34 |
phosphatidate cytidylyltransferase |
|
_____________145______________________________170\n_____________|________________________________|\n5'-GAC...CUUGC_______G___AAAAC________________AACGA...GUA-3'\n______________UAGAAGC_AUU_____________AUACCAAC\n______________:||||||_|||_____________||||||||\n______________GUCUUCG_UAA_____________UAUGGUUG\n3'-UUU...UCUCA_______A___GGUACCGCAAUCU________AA-5'\n_____________|________________________________|\n_____________35_______________________________2\n |
163 -- 169 |
3 -- 9 |
-16.5797 kcal/mol |
2.2962 kcal/mol |
8.59197 kcal/mol |
145 170@LB@ | |@LB@5'-GAC...CUUGC G AAAAC AACGA...GUA-3'@LB@ UAGAAGC AUU AUACCAAC@LB@ :|||||| ||| ||||||||@LB@ GUCUUCG UAA UAUGGUUG@LB@3'-UUU...UCUCA A GGUACCGCAAUCU AA-5'@LB@ | |@LB@ 35 2@LB@@LB@@LB@Energy -5.69 kcal/mol@LB@Hybridization Energy -16.5797 kcal/mol@LB@Unfolding Energy - mRNA 2.2962 kcal/mol@LB@Unfolding Energy - sRNA 8.59197 kcal/mol@LB@@LB@Position - mRNA 146 -- 169@LB@Position - sRNA 3 -- 34@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 3 -- 9@LB@ |
144 |
0.05714 |
0.3262 |
ct_392 |
yprS |
-4.10 |
0.509599 |
238 -- 247 |
22 -- 33 |
|
|
_____________237__________248\n_____________|____________|\n5'-AGG...CCCUG____________CAAUU...GUC-3'\n______________AGAGGCU__UCC\n______________|||:|||__|||\n______________UCUUCGA__AGG\n3'-UUU...CUCAG_______UA___UACCG...GAA-5'\n_____________|____________|\n_____________34___________21\n |
238 -- 244 |
27 -- 33 |
-11.7781 kcal/mol |
2.9519 kcal/mol |
4.72509 kcal/mol |
237 248@LB@ | |@LB@5'-AGG...CCCUG CAAUU...GUC-3'@LB@ AGAGGCU UCC@LB@ |||:||| |||@LB@ UCUUCGA AGG@LB@3'-UUU...CUCAG UA UACCG...GAA-5'@LB@ | |@LB@ 34 21@LB@@LB@@LB@Energy -4.10 kcal/mol@LB@Hybridization Energy -11.7781 kcal/mol@LB@Unfolding Energy - mRNA 2.9519 kcal/mol@LB@Unfolding Energy - sRNA 4.72509 kcal/mol@LB@@LB@Position - mRNA 238 -- 247@LB@Position - sRNA 22 -- 33@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 27 -- 33@LB@ |
145 |
0.05831 |
0.3298 |
ct_635 |
N/A |
-5.11 |
0.346704 |
276 -- 282 |
53 -- 59 |
|
|
_____________275_____283\n_____________|_______|\n5'-AUC...UCGAA_______UUGGA...CUG-3'\n______________CCCUCCU\n______________|||:|||\n______________GGGGGGA\n3'-UUU...CUGAA_______CACAU...GAA-5'\n_____________|_______|\n_____________60______52\n |
276 -- 282 |
53 -- 59 |
-11.2032 kcal/mol |
0.619026 kcal/mol |
5.47887 kcal/mol |
275 283@LB@ | |@LB@5'-AUC...UCGAA UUGGA...CUG-3'@LB@ CCCUCCU@LB@ |||:|||@LB@ GGGGGGA@LB@3'-UUU...CUGAA CACAU...GAA-5'@LB@ | |@LB@ 60 52@LB@@LB@@LB@Energy -5.11 kcal/mol@LB@Hybridization Energy -11.2032 kcal/mol@LB@Unfolding Energy - mRNA 0.619026 kcal/mol@LB@Unfolding Energy - sRNA 5.47887 kcal/mol@LB@@LB@Position - mRNA 276 -- 282@LB@Position - sRNA 53 -- 59@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 53 -- 59@LB@ |
146 |
0.05858 |
0.3298 |
ct_655 |
kdsA |
-5.70 |
0.267824 |
236 -- 245 |
48 -- 57 |
2-dehydro-3-deoxyphosphooctonate aldolase |
|
_____________235________246\n_____________|__________|\n5'-GCU...GCAGG__________AUUGA...CUC-3'\n______________CCCUUGUGUA\n______________|||:||||||\n______________GGGGACACAU\n3'-UUU...GAAGG__________GUUUG...GAA-5'\n_____________|__________|\n_____________58_________47\n |
237 -- 243 |
50 -- 56 |
-16.3498 kcal/mol |
3.37377 kcal/mol |
7.27486 kcal/mol |
235 246@LB@ | |@LB@5'-GCU...GCAGG AUUGA...CUC-3'@LB@ CCCUUGUGUA@LB@ |||:||||||@LB@ GGGGACACAU@LB@3'-UUU...GAAGG GUUUG...GAA-5'@LB@ | |@LB@ 58 47@LB@@LB@@LB@Energy -5.70 kcal/mol@LB@Hybridization Energy -16.3498 kcal/mol@LB@Unfolding Energy - mRNA 3.37377 kcal/mol@LB@Unfolding Energy - sRNA 7.27486 kcal/mol@LB@@LB@Position - mRNA 236 -- 245@LB@Position - sRNA 48 -- 57@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 50 -- 56@LB@ |
147 |
0.05913 |
0.3307 |
ct_243 |
lpxD |
-5.18 |
0.335797 |
179 -- 192 |
18 -- 32 |
UDP-3-O-acylglucosamine N-acyltransferase |
|
_____________178_____________193\n_____________|_______________|\n5'-UCA...CAUGC_______G____A__AGUGC...UCG-3'\n______________GAAGCUA__CCG_GG\n______________|||||||__||:_||\n______________CUUCGAU__GGU_CC\n3'-UUU...UCAGU_______AA___A__GCAAU...GAA-5'\n_____________|_______________|\n_____________33______________17\n |
179 -- 185 |
26 -- 32 |
-15.005 kcal/mol |
4.85774 kcal/mol |
4.96566 kcal/mol |
178 193@LB@ | |@LB@5'-UCA...CAUGC G A AGUGC...UCG-3'@LB@ GAAGCUA CCG GG@LB@ ||||||| ||: ||@LB@ CUUCGAU GGU CC@LB@3'-UUU...UCAGU AA A GCAAU...GAA-5'@LB@ | |@LB@ 33 17@LB@@LB@@LB@Energy -5.18 kcal/mol@LB@Hybridization Energy -15.005 kcal/mol@LB@Unfolding Energy - mRNA 4.85774 kcal/mol@LB@Unfolding Energy - sRNA 4.96566 kcal/mol@LB@@LB@Position - mRNA 179 -- 192@LB@Position - sRNA 18 -- 32@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 26 -- 32@LB@ |
148 |
0.06134 |
0.3407 |
ct_434 |
ygbB |
-10.66 |
0.019089 |
186 -- 200 |
41 -- 57 |
2-C-methyl-D-erythritol 2 4-cyclodiphosphate synthase |
|
_____________185_______________201\n_____________|_________________|\n5'-GGU...CCUGU_____U___________AUGAC...AUC-3'\n______________CCCCU___UGCAAGCAC\n______________|||||___|:|||:|||\n______________GGGGA___AUGUUUGUG\n3'-UUU...GAAGG_____CAC_________AUCUC...GAA-5'\n_____________|_________________|\n_____________58________________40\n |
194 -- 200 |
41 -- 47 |
-19.7128 kcal/mol |
1.2348 kcal/mol |
7.82241 kcal/mol |
185 201@LB@ | |@LB@5'-GGU...CCUGU U AUGAC...AUC-3'@LB@ CCCCU UGCAAGCAC@LB@ ||||| |:|||:|||@LB@ GGGGA AUGUUUGUG@LB@3'-UUU...GAAGG CAC AUCUC...GAA-5'@LB@ | |@LB@ 58 40@LB@@LB@@LB@Energy -10.66 kcal/mol@LB@Hybridization Energy -19.7128 kcal/mol@LB@Unfolding Energy - mRNA 1.2348 kcal/mol@LB@Unfolding Energy - sRNA 7.82241 kcal/mol@LB@@LB@Position - mRNA 186 -- 200@LB@Position - sRNA 41 -- 57@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 41 -- 47@LB@ |
149 |
0.06369 |
0.3424 |
ct_124 |
accC |
-5.62 |
0.277702 |
171 -- 193 |
17 -- 31 |
acetyl-CoA carboxylase biotin carboxylase subunit |
|
_____________170_____________________194\n_____________|_______________________|\n5'-CUC...GUUCU____________AUAGUUAA___UUAGU...UGG-3'\n______________AAGUUAUUCCGU________GGC\n______________|||:||||||:|________|||\n______________UUCGAUAAGGUA________CCG\n3'-UUU...CAGUC_______________________CAAUC...GAA-5'\n_____________|_______________________|\n_____________32______________________16\n |
176 -- 182 |
20 -- 26 |
-15.1557 kcal/mol |
4.67447 kcal/mol |
4.86101 kcal/mol |
170 194@LB@ | |@LB@5'-CUC...GUUCU AUAGUUAA UUAGU...UGG-3'@LB@ AAGUUAUUCCGU GGC@LB@ |||:||||||:| |||@LB@ UUCGAUAAGGUA CCG@LB@3'-UUU...CAGUC CAAUC...GAA-5'@LB@ | |@LB@ 32 16@LB@@LB@@LB@Energy -5.62 kcal/mol@LB@Hybridization Energy -15.1557 kcal/mol@LB@Unfolding Energy - mRNA 4.67447 kcal/mol@LB@Unfolding Energy - sRNA 4.86101 kcal/mol@LB@@LB@Position - mRNA 171 -- 193@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 20 -- 26@LB@ |
150 |
0.06394 |
0.3424 |
ct_208 |
gseA |
-4.42 |
0.454874 |
290 -- 300 |
19 -- 29 |
3-deoxy-D-manno-octulosonic acid transferase |
|
_____________289________300\n_____________|__________|\n5'-UUG...AAAGU___U_______-3'\n______________GUU_UUCCAUG\n______________|:|_|||||||\n______________CGA_AAGGUAC\n3'-UUU...GUCUU___U_______CGCAA...GAA-5'\n_____________|___________|\n_____________30__________18\n |
294 -- 300 |
19 -- 25 |
-10.2082 kcal/mol |
1.1238 kcal/mol |
4.66719 kcal/mol |
289 300@LB@ | |@LB@5'-UUG...AAAGU U -3'@LB@ GUU UUCCAUG@LB@ |:| |||||||@LB@ CGA AAGGUAC@LB@3'-UUU...GUCUU U CGCAA...GAA-5'@LB@ | |@LB@ 30 18@LB@@LB@@LB@Energy -4.42 kcal/mol@LB@Hybridization Energy -10.2082 kcal/mol@LB@Unfolding Energy - mRNA 1.1238 kcal/mol@LB@Unfolding Energy - sRNA 4.66719 kcal/mol@LB@@LB@Position - mRNA 290 -- 300@LB@Position - sRNA 19 -- 29@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 19 -- 25@LB@ |
151 |
0.06398 |
0.3424 |
ct_647 |
N/A |
-6.81 |
0.158308 |
265 -- 281 |
12 -- 34 |
|
|
_____________264_____________________282\n_____________|_______________________|\n5'-UAU...UGCAA_______________________CGUCA...AGG-3'\n______________UAGGAGC______AUGGUGUUGG\n______________:||:|||______||||:|||:|\n______________GUCUUCG______UACCGCAAUC\n3'-UUU...UCUCA_______AUAAGG__________UUAUG...GAA-5'\n_____________|_______________________|\n_____________35______________________11\n |
274 -- 280 |
13 -- 19 |
-18.8273 kcal/mol |
3.44317 kcal/mol |
8.57325 kcal/mol |
264 282@LB@ | |@LB@5'-UAU...UGCAA CGUCA...AGG-3'@LB@ UAGGAGC AUGGUGUUGG@LB@ :||:||| ||||:|||:|@LB@ GUCUUCG UACCGCAAUC@LB@3'-UUU...UCUCA AUAAGG UUAUG...GAA-5'@LB@ | |@LB@ 35 11@LB@@LB@@LB@Energy -6.81 kcal/mol@LB@Hybridization Energy -18.8273 kcal/mol@LB@Unfolding Energy - mRNA 3.44317 kcal/mol@LB@Unfolding Energy - sRNA 8.57325 kcal/mol@LB@@LB@Position - mRNA 265 -- 281@LB@Position - sRNA 12 -- 34@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 13 -- 19@LB@ |
152 |
0.064 |
0.3424 |
ct_749 |
alaS |
-4.53 |
0.436714 |
274 -- 290 |
41 -- 57 |
alanine--tRNA ligase |
|
_____________273_______________291\n_____________|_________________|\n5'-AAA...AUCUU_______UUUCCC____AAUGA...CUU-3'\n______________CUCCUGU______GCAU\n______________|:|||||______:||:\n______________GGGGACA______UGUG\n3'-UUU...GAAGG_______CAUGUU____AUCUC...GAA-5'\n_____________|_________________|\n_____________58________________40\n |
274 -- 280 |
51 -- 57 |
-13.0187 kcal/mol |
0.670655 kcal/mol |
7.82241 kcal/mol |
273 291@LB@ | |@LB@5'-AAA...AUCUU UUUCCC AAUGA...CUU-3'@LB@ CUCCUGU GCAU@LB@ |:||||| :||:@LB@ GGGGACA UGUG@LB@3'-UUU...GAAGG CAUGUU AUCUC...GAA-5'@LB@ | |@LB@ 58 40@LB@@LB@@LB@Energy -4.53 kcal/mol@LB@Hybridization Energy -13.0187 kcal/mol@LB@Unfolding Energy - mRNA 0.670655 kcal/mol@LB@Unfolding Energy - sRNA 7.82241 kcal/mol@LB@@LB@Position - mRNA 274 -- 290@LB@Position - sRNA 41 -- 57@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 51 -- 57@LB@ |
153 |
0.06453 |
0.3424 |
ct_729 |
serS |
-6.28 |
0.205305 |
1 -- 23 |
3 -- 33 |
serine--tRNA ligase |
|
______________1______________________________24\n______________|______________________________|\n___________5'-____C_G_____U__________________CCUCA...UGG-3'\n______________AGAA_C_AUUCC_UG________AUGCCAAC\n______________||||_|_|||||_||________||:|||||\n______________UCUU_G_UAAGG_AC________UAUGGUUG\n3'-UUU...CUCAG____C_A_____U__CGCAAUCU________AA-5'\n_____________|_______________________________|\n_____________34______________________________2\n |
17 -- 23 |
3 -- 9 |
-16.9997 kcal/mol |
2.1318 kcal/mol |
8.59196 kcal/mol |
1 24@LB@ | |@LB@ 5'- C G U CCUCA...UGG-3'@LB@ AGAA C AUUCC UG AUGCCAAC@LB@ |||| | ||||| || ||:|||||@LB@ UCUU G UAAGG AC UAUGGUUG@LB@3'-UUU...CUCAG C A U CGCAAUCU AA-5'@LB@ | |@LB@ 34 2@LB@@LB@@LB@Energy -6.28 kcal/mol@LB@Hybridization Energy -16.9997 kcal/mol@LB@Unfolding Energy - mRNA 2.1318 kcal/mol@LB@Unfolding Energy - sRNA 8.59196 kcal/mol@LB@@LB@Position - mRNA 1 -- 23@LB@Position - sRNA 3 -- 33@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 3 -- 9@LB@ |
154 |
0.06467 |
0.3424 |
ct_517 |
rl24 |
-3.21 |
0.671117 |
143 -- 150 |
27 -- 34 |
50S ribosomal protein L24 |
|
_____________142______151\n_____________|________|\n5'-UAA...CGAGA________UUGUU...AGG-3'\n______________CAGAGGCU\n______________||||:|||\n______________GUCUUCGA\n3'-UUU...UCUCA________UAAGG...GAA-5'\n_____________|________|\n_____________35_______26\n |
144 -- 150 |
27 -- 33 |
-11.3134 kcal/mol |
3.50051 kcal/mol |
4.59929 kcal/mol |
142 151@LB@ | |@LB@5'-UAA...CGAGA UUGUU...AGG-3'@LB@ CAGAGGCU@LB@ ||||:|||@LB@ GUCUUCGA@LB@3'-UUU...UCUCA UAAGG...GAA-5'@LB@ | |@LB@ 35 26@LB@@LB@@LB@Energy -3.21 kcal/mol@LB@Hybridization Energy -11.3134 kcal/mol@LB@Unfolding Energy - mRNA 3.50051 kcal/mol@LB@Unfolding Energy - sRNA 4.59929 kcal/mol@LB@@LB@Position - mRNA 143 -- 150@LB@Position - sRNA 27 -- 34@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 27 -- 33@LB@ |
155 |
0.06493 |
0.3424 |
ct_355 |
N/A |
-6.27 |
0.205473 |
16 -- 22 |
80 -- 86 |
|
|
_____________15______23\n_____________|_______|\n5'-GUU...UUCUG_______GGUCC...CCU-3'\n______________ACGGCUG\n______________||||||:\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
16 -- 22 |
80 -- 86 |
-10.68 kcal/mol |
3.341 kcal/mol |
1.06449 kcal/mol |
15 23@LB@ | |@LB@5'-GUU...UUCUG GGUCC...CCU-3'@LB@ ACGGCUG@LB@ ||||||:@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -6.27 kcal/mol@LB@Hybridization Energy -10.68 kcal/mol@LB@Unfolding Energy - mRNA 3.341 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 16 -- 22@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 80 -- 86@LB@ |
156 |
0.06505 |
0.3424 |
ct_254 |
N/A |
-6.97 |
0.146186 |
84 -- 91 |
80 -- 87 |
|
|
_____________83_______92\n_____________|________|\n5'-GUC...AUCGU________GCGUU...UAC-3'\n______________UAUGGCUG\n______________||:||||:\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
85 -- 91 |
80 -- 86 |
-9.90306 kcal/mol |
1.8348 kcal/mol |
1.09752 kcal/mol |
83 92@LB@ | |@LB@5'-GUC...AUCGU GCGUU...UAC-3'@LB@ UAUGGCUG@LB@ ||:||||:@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -6.97 kcal/mol@LB@Hybridization Energy -9.90306 kcal/mol@LB@Unfolding Energy - mRNA 1.8348 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 84 -- 91@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 80 -- 86@LB@ |
157 |
0.06639 |
0.3424 |
ct_213 |
rpiA |
-7.48 |
0.112460 |
245 -- 274 |
28 -- 57 |
ribose-5-phosphate isomerase A |
|
_____________244____________________________275\n_____________|______________________________|\n5'-GAA...UUUUU____AUCAA_____A_____C_C_______AGUAG...UGU-3'\n______________CCCU_____GCAGA_ACUAG_G_UAGAGGC\n______________|||:_____:||:|_|||||_|_:|||:||\n______________GGGG_____UGUUU_UGAUC_C_GUCUUCG\n3'-UUU...GAAGG____ACACA_____G_____U_A_______AUAAG...GAA-5'\n_____________|______________________________|\n_____________58_____________________________27\n |
268 -- 274 |
28 -- 34 |
-25.4315 kcal/mol |
5.87242 kcal/mol |
12.0748 kcal/mol |
244 275@LB@ | |@LB@5'-GAA...UUUUU AUCAA A C C AGUAG...UGU-3'@LB@ CCCU GCAGA ACUAG G UAGAGGC@LB@ |||: :||:| ||||| | :|||:||@LB@ GGGG UGUUU UGAUC C GUCUUCG@LB@3'-UUU...GAAGG ACACA G U A AUAAG...GAA-5'@LB@ | |@LB@ 58 27@LB@@LB@@LB@Energy -7.48 kcal/mol@LB@Hybridization Energy -25.4315 kcal/mol@LB@Unfolding Energy - mRNA 5.87242 kcal/mol@LB@Unfolding Energy - sRNA 12.0748 kcal/mol@LB@@LB@Position - mRNA 245 -- 274@LB@Position - sRNA 28 -- 57@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 28 -- 34@LB@ |
158 |
0.06677 |
0.3424 |
ct_770 |
fabF |
-2.81 |
0.742017 |
6 -- 13 |
26 -- 33 |
3-oxoacyl-ACP synthase |
|
_____________5________14\n_____________|________|\n______5'-UAUAG________AAAAA...GUG-3'\n______________AGGAGUUA\n______________||:||:||\n______________UCUUCGAU\n3'-UUU...CUCAG________AAGGU...GAA-5'\n_____________|________|\n_____________34_______25\n |
7 -- 13 |
26 -- 32 |
-8.27201 kcal/mol |
0.759487 kcal/mol |
4.69868 kcal/mol |
5 14@LB@ | |@LB@ 5'-UAUAG AAAAA...GUG-3'@LB@ AGGAGUUA@LB@ ||:||:||@LB@ UCUUCGAU@LB@3'-UUU...CUCAG AAGGU...GAA-5'@LB@ | |@LB@ 34 25@LB@@LB@@LB@Energy -2.81 kcal/mol@LB@Hybridization Energy -8.27201 kcal/mol@LB@Unfolding Energy - mRNA 0.759487 kcal/mol@LB@Unfolding Energy - sRNA 4.69868 kcal/mol@LB@@LB@Position - mRNA 6 -- 13@LB@Position - sRNA 26 -- 33@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 26 -- 32@LB@ |
159 |
0.06732 |
0.3424 |
ct_663 |
N/A |
-7.57 |
0.107718 |
228 -- 234 |
15 -- 21 |
type III secretion system chaperone |
|
_____________227_____235\n_____________|_______|\n5'-UCU...AUUUU_______AUAUG...GCC-3'\n______________GUGGCGU\n______________:||||||\n______________UACCGCA\n3'-UUU...UAAGG_______AUCUU...GAA-5'\n_____________|_______|\n_____________22______14\n |
228 -- 234 |
15 -- 21 |
-10.4333 kcal/mol |
1.67755 kcal/mol |
1.18845 kcal/mol |
227 235@LB@ | |@LB@5'-UCU...AUUUU AUAUG...GCC-3'@LB@ GUGGCGU@LB@ :||||||@LB@ UACCGCA@LB@3'-UUU...UAAGG AUCUU...GAA-5'@LB@ | |@LB@ 22 14@LB@@LB@@LB@Energy -7.57 kcal/mol@LB@Hybridization Energy -10.4333 kcal/mol@LB@Unfolding Energy - mRNA 1.67755 kcal/mol@LB@Unfolding Energy - sRNA 1.18845 kcal/mol@LB@@LB@Position - mRNA 228 -- 234@LB@Position - sRNA 15 -- 21@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 15 -- 21@LB@ |
160 |
0.06752 |
0.3424 |
ct_324 |
N/A |
-4.86 |
0.383763 |
195 -- 205 |
17 -- 27 |
|
|
_____________194_________206\n_____________|___________|\n5'-ACA...GUAGA__GG_______CAAAG...UGC-3'\n______________UA__CCAUGGU\n______________||__||||||:\n______________AU__GGUACCG\n3'-UUU...CUUCG__AA_______CAAUC...GAA-5'\n_____________|___________|\n_____________28__________16\n |
199 -- 205 |
17 -- 23 |
-11.7516 kcal/mol |
2.4023 kcal/mol |
4.49196 kcal/mol |
194 206@LB@ | |@LB@5'-ACA...GUAGA GG CAAAG...UGC-3'@LB@ UA CCAUGGU@LB@ || ||||||:@LB@ AU GGUACCG@LB@3'-UUU...CUUCG AA CAAUC...GAA-5'@LB@ | |@LB@ 28 16@LB@@LB@@LB@Energy -4.86 kcal/mol@LB@Hybridization Energy -11.7516 kcal/mol@LB@Unfolding Energy - mRNA 2.4023 kcal/mol@LB@Unfolding Energy - sRNA 4.49196 kcal/mol@LB@@LB@Position - mRNA 195 -- 205@LB@Position - sRNA 17 -- 27@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 17 -- 23@LB@ |
161 |
0.06753 |
0.3424 |
ct_656 |
N/A |
-5.22 |
0.330968 |
193 -- 236 |
21 -- 57 |
|
|
_____________192_____________________________________________237\n_____________|_______________________________________________|\n5'-AUG...GGGAG_________________GCAAUUCAUAGC_______U________G_AACCA...UGA-3'\n______________UCUCU_UGUAUGGACAC____________GAGUCAG___CUGUUC_A\n______________:|:||_||||:::||||____________|||||||___||:|||_|\n______________GGGGA_ACAUGUUUGUG____________CUCAGUC___GAUAAG_U\n3'-UUU...GAAGG_____C___________AU_________________UUC______G_ACCGC...GAA-5'\n_____________|_______________________________________________|\n_____________58______________________________________________20\n |
221 -- 227 |
32 -- 38 |
-30.4155 kcal/mol |
12.5085 kcal/mol |
12.6912 kcal/mol |
192 237@LB@ | |@LB@5'-AUG...GGGAG GCAAUUCAUAGC U G AACCA...UGA-3'@LB@ UCUCU UGUAUGGACAC GAGUCAG CUGUUC A@LB@ :|:|| ||||:::|||| ||||||| ||:||| |@LB@ GGGGA ACAUGUUUGUG CUCAGUC GAUAAG U@LB@3'-UUU...GAAGG C AU UUC G ACCGC...GAA-5'@LB@ | |@LB@ 58 20@LB@@LB@@LB@Energy -5.22 kcal/mol@LB@Hybridization Energy -30.4155 kcal/mol@LB@Unfolding Energy - mRNA 12.5085 kcal/mol@LB@Unfolding Energy - sRNA 12.6912 kcal/mol@LB@@LB@Position - mRNA 193 -- 236@LB@Position - sRNA 21 -- 57@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 32 -- 38@LB@ |
162 |
0.06757 |
0.3424 |
ct_083 |
N/A |
-6.28 |
0.205297 |
111 -- 125 |
18 -- 33 |
|
|
_____________110______________126\n_____________|________________|\n5'-GCU...CAAGA________CAG_____AAAUC...UUU-3'\n______________AGAAGCUG____GUGG\n______________|||||||:____:|||\n______________UCUUCGAU____UACC\n3'-UUU...CUCAG________AAGG____GCAAU...GAA-5'\n_____________|________________|\n_____________34_______________17\n |
112 -- 118 |
26 -- 32 |
-15.1014 kcal/mol |
3.84734 kcal/mol |
4.97798 kcal/mol |
110 126@LB@ | |@LB@5'-GCU...CAAGA CAG AAAUC...UUU-3'@LB@ AGAAGCUG GUGG@LB@ |||||||: :|||@LB@ UCUUCGAU UACC@LB@3'-UUU...CUCAG AAGG GCAAU...GAA-5'@LB@ | |@LB@ 34 17@LB@@LB@@LB@Energy -6.28 kcal/mol@LB@Hybridization Energy -15.1014 kcal/mol@LB@Unfolding Energy - mRNA 3.84734 kcal/mol@LB@Unfolding Energy - sRNA 4.97798 kcal/mol@LB@@LB@Position - mRNA 111 -- 125@LB@Position - sRNA 18 -- 33@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 26 -- 32@LB@ |
163 |
0.06794 |
0.3424 |
ct_661 |
N/A |
-2.85 |
0.735752 |
184 -- 191 |
21 -- 28 |
DNA topoisomerase IV subunit B |
|
_____________183______192\n_____________|________|\n5'-AAA...UUGCC________CACAC...GCG-3'\n______________UUAUUCCA\n______________:|||||||\n______________GAUAAGGU\n3'-UUU...UCUUC________ACCGC...GAA-5'\n_____________|________|\n_____________29_______20\n |
185 -- 191 |
21 -- 27 |
-7.6538 kcal/mol |
0.450062 kcal/mol |
4.35509 kcal/mol |
183 192@LB@ | |@LB@5'-AAA...UUGCC CACAC...GCG-3'@LB@ UUAUUCCA@LB@ :|||||||@LB@ GAUAAGGU@LB@3'-UUU...UCUUC ACCGC...GAA-5'@LB@ | |@LB@ 29 20@LB@@LB@@LB@Energy -2.85 kcal/mol@LB@Hybridization Energy -7.6538 kcal/mol@LB@Unfolding Energy - mRNA 0.450062 kcal/mol@LB@Unfolding Energy - sRNA 4.35509 kcal/mol@LB@@LB@Position - mRNA 184 -- 191@LB@Position - sRNA 21 -- 28@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 21 -- 27@LB@ |
164 |
0.06834 |
0.3424 |
ct_716 |
N/A |
-9.26 |
0.042990 |
10 -- 57 |
2 -- 60 |
|
|
_____________9____________________________________________________________58\n_____________|____________________________________________________________|\n5'-UCA...GAGCU________UACU_____GC_________U_________GAUAUCAU______________AGGAG...UAG-3'\n______________UCUCUCCU_____CAAA__CUA___UCA_GAAGCUAUU________________CCAACU\n______________||:|:|||_____||||__|||___|||_|||||||||________________||||||\n______________AGGGGGGA_____GUUU__GAU___AGU_CUUCGAUAA________________GGUUGA\n3'-UUU...ACUGA________CACAU____GU___CUC_____________GGUACCGCAAUCUUAU______A-5'\n_____________|____________________________________________________________|\n_____________61___________________________________________________________1\n |
37 -- 43 |
24 -- 30 |
-32.8059 kcal/mol |
5.03112 kcal/mol |
18.5194 kcal/mol |
9 58@LB@ | |@LB@5'-UCA...GAGCU UACU GC U GAUAUCAU AGGAG...UAG-3'@LB@ UCUCUCCU CAAA CUA UCA GAAGCUAUU CCAACU@LB@ ||:|:||| |||| ||| ||| ||||||||| ||||||@LB@ AGGGGGGA GUUU GAU AGU CUUCGAUAA GGUUGA@LB@3'-UUU...ACUGA CACAU GU CUC GGUACCGCAAUCUUAU A-5'@LB@ | |@LB@ 61 1@LB@@LB@@LB@Energy -9.26 kcal/mol@LB@Hybridization Energy -32.8059 kcal/mol@LB@Unfolding Energy - mRNA 5.03112 kcal/mol@LB@Unfolding Energy - sRNA 18.5194 kcal/mol@LB@@LB@Position - mRNA 10 -- 57@LB@Position - sRNA 2 -- 60@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 24 -- 30@LB@ |
165 |
0.06872 |
0.3424 |
ct_859 |
lytB |
-7.21 |
0.129268 |
10 -- 22 |
19 -- 31 |
4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|
_____________9_____________23\n_____________|_____________|\n5'-UCG...UAUAA___________A_UAUCU...CUA-3'\n______________AGGCUAUUCCG_G\n______________|:||||||||:_|\n______________UUCGAUAAGGU_C\n3'-UUU...CAGUC___________A_CGCAA...GAA-5'\n_____________|_____________|\n_____________32____________18\n |
14 -- 20 |
21 -- 27 |
-14.969 kcal/mol |
2.89565 kcal/mol |
4.85984 kcal/mol |
9 23@LB@ | |@LB@5'-UCG...UAUAA A UAUCU...CUA-3'@LB@ AGGCUAUUCCG G@LB@ |:||||||||: |@LB@ UUCGAUAAGGU C@LB@3'-UUU...CAGUC A CGCAA...GAA-5'@LB@ | |@LB@ 32 18@LB@@LB@@LB@Energy -7.21 kcal/mol@LB@Hybridization Energy -14.969 kcal/mol@LB@Unfolding Energy - mRNA 2.89565 kcal/mol@LB@Unfolding Energy - sRNA 4.85984 kcal/mol@LB@@LB@Position - mRNA 10 -- 22@LB@Position - sRNA 19 -- 31@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 21 -- 27@LB@ |
166 |
0.06935 |
0.3427 |
ct_700 |
N/A |
-9.45 |
0.038462 |
185 -- 207 |
17 -- 35 |
|
|
_____________184_____________________208\n_____________|_______________________|\n5'-UGG...AAAAC___________GCAUUA______UAAUC...AUC-3'\n______________UCAGAAGUUGU______UGUGGC\n______________|||||||:|:|______::||||\n______________AGUCUUCGAUA______GUACCG\n3'-UUU...AUCUC___________AG__________CAAUC...GAA-5'\n_____________|_______________________|\n_____________36______________________16\n |
187 -- 193 |
27 -- 33 |
-18.7157 kcal/mol |
4.28595 kcal/mol |
4.9781 kcal/mol |
184 208@LB@ | |@LB@5'-UGG...AAAAC GCAUUA UAAUC...AUC-3'@LB@ UCAGAAGUUGU UGUGGC@LB@ |||||||:|:| ::||||@LB@ AGUCUUCGAUA GUACCG@LB@3'-UUU...AUCUC AG CAAUC...GAA-5'@LB@ | |@LB@ 36 16@LB@@LB@@LB@Energy -9.45 kcal/mol@LB@Hybridization Energy -18.7157 kcal/mol@LB@Unfolding Energy - mRNA 4.28595 kcal/mol@LB@Unfolding Energy - sRNA 4.9781 kcal/mol@LB@@LB@Position - mRNA 185 -- 207@LB@Position - sRNA 17 -- 35@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 27 -- 33@LB@ |
167 |
0.06963 |
0.3427 |
ct_724 |
N/A |
-5.10 |
0.346834 |
244 -- 255 |
24 -- 35 |
|
|
_____________243__________256\n_____________|____________|\n5'-ACC...GUUAU____________GUCGC...GAC-3'\n______________UCGGGGGUUAUU\n______________||:|::|:||||\n______________AGUCUUCGAUAA\n3'-UUU...AUCUC____________GGUAC...GAA-5'\n_____________|____________|\n_____________36___________23\n |
245 -- 251 |
28 -- 34 |
-12.4512 kcal/mol |
2.62645 kcal/mol |
4.72035 kcal/mol |
243 256@LB@ | |@LB@5'-ACC...GUUAU GUCGC...GAC-3'@LB@ UCGGGGGUUAUU@LB@ ||:|::|:||||@LB@ AGUCUUCGAUAA@LB@3'-UUU...AUCUC GGUAC...GAA-5'@LB@ | |@LB@ 36 23@LB@@LB@@LB@Energy -5.10 kcal/mol@LB@Hybridization Energy -12.4512 kcal/mol@LB@Unfolding Energy - mRNA 2.62645 kcal/mol@LB@Unfolding Energy - sRNA 4.72035 kcal/mol@LB@@LB@Position - mRNA 244 -- 255@LB@Position - sRNA 24 -- 35@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 28 -- 34@LB@ |
168 |
0.07022 |
0.3436 |
ct_336 |
ptsI |
-3.01 |
0.707290 |
114 -- 124 |
23 -- 33 |
phosphoenolpyruvate-protein phosphotransferase |
|
_____________113_________125\n_____________|___________|\n5'-GUU...GGCGA__UU_______AUAUA...UGU-3'\n______________GG__GCUGUUC\n______________:|__|||:|||\n______________UC__CGAUAAG\n3'-UUU...CUCAG__UU_______GUACC...GAA-5'\n_____________|___________|\n_____________34__________22\n |
118 -- 124 |
23 -- 29 |
-10.9545 kcal/mol |
3.2189 kcal/mol |
4.72321 kcal/mol |
113 125@LB@ | |@LB@5'-GUU...GGCGA UU AUAUA...UGU-3'@LB@ GG GCUGUUC@LB@ :| |||:|||@LB@ UC CGAUAAG@LB@3'-UUU...CUCAG UU GUACC...GAA-5'@LB@ | |@LB@ 34 22@LB@@LB@@LB@Energy -3.01 kcal/mol@LB@Hybridization Energy -10.9545 kcal/mol@LB@Unfolding Energy - mRNA 3.2189 kcal/mol@LB@Unfolding Energy - sRNA 4.72321 kcal/mol@LB@@LB@Position - mRNA 114 -- 124@LB@Position - sRNA 23 -- 33@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 23 -- 29@LB@ |
169 |
0.07086 |
0.3447 |
ct_615 |
sigA |
-4.07 |
0.514760 |
248 -- 272 |
10 -- 33 |
RNA polymerase sigma factor |
|
_____________247________________________273\n_____________|__________________________|\n5'-GGU...CAAGA_____AAA_____AAGAAA_______GAGUU...AAG-3'\n______________AGAAG____UCCA______GUUAGAA\n______________|||||____||||______|||||||\n______________UCUUC____AGGU______CAAUCUU\n3'-UUU...CUCAG_____GAUA____ACCG_________AUGGU...GAA-5'\n_____________|__________________________|\n_____________34_________________________9\n |
266 -- 272 |
10 -- 16 |
-15.5151 kcal/mol |
2.85327 kcal/mol |
8.5898 kcal/mol |
247 273@LB@ | |@LB@5'-GGU...CAAGA AAA AAGAAA GAGUU...AAG-3'@LB@ AGAAG UCCA GUUAGAA@LB@ ||||| |||| |||||||@LB@ UCUUC AGGU CAAUCUU@LB@3'-UUU...CUCAG GAUA ACCG AUGGU...GAA-5'@LB@ | |@LB@ 34 9@LB@@LB@@LB@Energy -4.07 kcal/mol@LB@Hybridization Energy -15.5151 kcal/mol@LB@Unfolding Energy - mRNA 2.85327 kcal/mol@LB@Unfolding Energy - sRNA 8.5898 kcal/mol@LB@@LB@Position - mRNA 248 -- 272@LB@Position - sRNA 10 -- 33@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 10 -- 16@LB@ |
170 |
0.07264 |
0.3448 |
ct_415 |
yebL |
-4.69 |
0.409849 |
24 -- 30 |
22 -- 28 |
metal ABC transporter substrate-binding protein |
|
_____________23______31\n_____________|_______|\n5'-AUU...AAAAA_______UCACC...CCU-3'\n______________CUGUUCC\n______________||:||||\n______________GAUAAGG\n3'-UUU...UCUUC_______UACCG...GAA-5'\n_____________|_______|\n_____________29______21\n |
24 -- 30 |
22 -- 28 |
-9.14166 kcal/mol |
0.102316 kcal/mol |
4.35007 kcal/mol |
23 31@LB@ | |@LB@5'-AUU...AAAAA UCACC...CCU-3'@LB@ CUGUUCC@LB@ ||:||||@LB@ GAUAAGG@LB@3'-UUU...UCUUC UACCG...GAA-5'@LB@ | |@LB@ 29 21@LB@@LB@@LB@Energy -4.69 kcal/mol@LB@Hybridization Energy -9.14166 kcal/mol@LB@Unfolding Energy - mRNA 0.102316 kcal/mol@LB@Unfolding Energy - sRNA 4.35007 kcal/mol@LB@@LB@Position - mRNA 24 -- 30@LB@Position - sRNA 22 -- 28@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 22 -- 28@LB@ |
171 |
0.07267 |
0.3448 |
ct_057 |
gcpE |
-5.03 |
0.358241 |
27 -- 78 |
18 -- 60 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) |
|
_____________26____________________________________________________79\n_____________|_____________________________________________________|\n5'-AGA...GAACA____UCAA_______AAUU________AUUUUUAAAG_______UC_______AGACC...AAU-3'\n______________UCCC____CCC_GUG____UAUAAACA__________GGAAGUU__UCCAUGG\n______________||||____|||_|||____||:|||||__________:||||:|__|||||||\n______________AGGG____GGG_CAC____AUGUUUGU__________UCUUCGA__AGGUACC\n3'-UUU...ACUGA___________A_______________GAUCUCAG_________UA_______GCAAU...GAA-5'\n_____________|_____________________________________________________|\n_____________61____________________________________________________17\n |
72 -- 78 |
18 -- 24 |
-36.1086 kcal/mol |
16.1769 kcal/mol |
14.9054 kcal/mol |
26 79@LB@ | |@LB@5'-AGA...GAACA UCAA AAUU AUUUUUAAAG UC AGACC...AAU-3'@LB@ UCCC CCC GUG UAUAAACA GGAAGUU UCCAUGG@LB@ |||| ||| ||| ||:||||| :||||:| |||||||@LB@ AGGG GGG CAC AUGUUUGU UCUUCGA AGGUACC@LB@3'-UUU...ACUGA A GAUCUCAG UA GCAAU...GAA-5'@LB@ | |@LB@ 61 17@LB@@LB@@LB@Energy -5.03 kcal/mol@LB@Hybridization Energy -36.1086 kcal/mol@LB@Unfolding Energy - mRNA 16.1769 kcal/mol@LB@Unfolding Energy - sRNA 14.9054 kcal/mol@LB@@LB@Position - mRNA 27 -- 78@LB@Position - sRNA 18 -- 60@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 18 -- 24@LB@ |
172 |
0.07285 |
0.3448 |
ct_090 |
lcrD |
-6.84 |
0.155915 |
81 -- 102 |
18 -- 39 |
low calcium response protein D |
|
_____________80______________________103\n_____________|_______________________|\n5'-AUU...GGAAA___________U________GA_ACCAC...UGU-3'\n______________AGAGUU_GAAG_UUAUUCCA__G\n______________|||||:_||||_:|||||||__|\n______________UCUCAG_CUUC_GAUAAGGU__C\n3'-UUU...UGUGA______U_____________AC_GCAAU...GAA-5'\n_____________|_______________________|\n_____________40______________________17\n |
93 -- 99 |
21 -- 27 |
-20.344 kcal/mol |
3.91171 kcal/mol |
9.59078 kcal/mol |
80 103@LB@ | |@LB@5'-AUU...GGAAA U GA ACCAC...UGU-3'@LB@ AGAGUU GAAG UUAUUCCA G@LB@ |||||: |||| :||||||| |@LB@ UCUCAG CUUC GAUAAGGU C@LB@3'-UUU...UGUGA U AC GCAAU...GAA-5'@LB@ | |@LB@ 40 17@LB@@LB@@LB@Energy -6.84 kcal/mol@LB@Hybridization Energy -20.344 kcal/mol@LB@Unfolding Energy - mRNA 3.91171 kcal/mol@LB@Unfolding Energy - sRNA 9.59078 kcal/mol@LB@@LB@Position - mRNA 81 -- 102@LB@Position - sRNA 18 -- 39@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 21 -- 27@LB@ |
173 |
0.07335 |
0.3448 |
ct_543 |
hisS |
-6.45 |
0.189015 |
1 -- 7 |
82 -- 88 |
histidine--tRNA ligase |
|
______________1______8\n______________|______|\n___________5'-_______GUAUU...AGC-3'\n______________AUGCGGC\n______________||:||||\n______________UAUGCCG\n3'-UUU...GCCUC_______AUUGA...GAA-5'\n_____________|_______|\n_____________89______81\n |
1 -- 7 |
82 -- 88 |
-9.9342 kcal/mol |
2.38776 kcal/mol |
1.09753 kcal/mol |
1 8@LB@ | |@LB@ 5'- GUAUU...AGC-3'@LB@ AUGCGGC@LB@ ||:||||@LB@ UAUGCCG@LB@3'-UUU...GCCUC AUUGA...GAA-5'@LB@ | |@LB@ 89 81@LB@@LB@@LB@Energy -6.45 kcal/mol@LB@Hybridization Energy -9.9342 kcal/mol@LB@Unfolding Energy - mRNA 2.38776 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 1 -- 7@LB@Position - sRNA 82 -- 88@LB@Position Seed - mRNA 1 -- 7@LB@Position Seed - sRNA 82 -- 88@LB@ |
174 |
0.07335 |
0.3448 |
ct_777 |
bioF |
-7.25 |
0.126962 |
76 -- 92 |
19 -- 34 |
8-amino-7-oxononanoate synthase |
|
_____________75________________93\n_____________|_________________|\n5'-CUG...UCAGG_______G_____U___UUGGG...UUU-3'\n______________UAGAAGC_AUUCC_AUG\n______________:||||||_|||||_|||\n______________GUCUUCG_UAAGG_UAC\n3'-UUU...UCUCA_______A_________CGCAA...GAA-5'\n_____________|_________________|\n_____________35________________18\n |
76 -- 82 |
28 -- 34 |
-16.4612 kcal/mol |
4.23516 kcal/mol |
4.97732 kcal/mol |
75 93@LB@ | |@LB@5'-CUG...UCAGG G U UUGGG...UUU-3'@LB@ UAGAAGC AUUCC AUG@LB@ :|||||| ||||| |||@LB@ GUCUUCG UAAGG UAC@LB@3'-UUU...UCUCA A CGCAA...GAA-5'@LB@ | |@LB@ 35 18@LB@@LB@@LB@Energy -7.25 kcal/mol@LB@Hybridization Energy -16.4612 kcal/mol@LB@Unfolding Energy - mRNA 4.23516 kcal/mol@LB@Unfolding Energy - sRNA 4.97732 kcal/mol@LB@@LB@Position - mRNA 76 -- 92@LB@Position - sRNA 19 -- 34@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 28 -- 34@LB@ |
175 |
0.07342 |
0.3448 |
ct_738 |
yycJ |
-7.78 |
0.096435 |
160 -- 204 |
18 -- 50 |
Zn-dependent hydrolase |
|
_____________159____________________________________________205\n_____________|______________________________________________|\n5'-CAU...ACCGC_____________UCCAAUUAUCAAA______C_A___A_______AAGGU...AAC-3'\n______________GU_CAAAUACUAG_____________UCAGGA_G_UUA_UCCAUGG\n______________||_||||:|||||_____________||||:|_|_:||_|||||||\n______________CA_GUUUGUGAUC_____________AGUCUU_C_GAU_AGGUACC\n3'-UUU...GGACA__U__________UC_______________________A_______GCAAU...GAA-5'\n_____________|______________________________________________|\n_____________51_____________________________________________17\n |
198 -- 204 |
18 -- 24 |
-28.1471 kcal/mol |
7.4527 kcal/mol |
12.9164 kcal/mol |
159 205@LB@ | |@LB@5'-CAU...ACCGC UCCAAUUAUCAAA C A A AAGGU...AAC-3'@LB@ GU CAAAUACUAG UCAGGA G UUA UCCAUGG@LB@ || ||||:||||| ||||:| | :|| |||||||@LB@ CA GUUUGUGAUC AGUCUU C GAU AGGUACC@LB@3'-UUU...GGACA U UC A GCAAU...GAA-5'@LB@ | |@LB@ 51 17@LB@@LB@@LB@Energy -7.78 kcal/mol@LB@Hybridization Energy -28.1471 kcal/mol@LB@Unfolding Energy - mRNA 7.4527 kcal/mol@LB@Unfolding Energy - sRNA 12.9164 kcal/mol@LB@@LB@Position - mRNA 160 -- 204@LB@Position - sRNA 18 -- 50@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 18 -- 24@LB@ |
176 |
0.07518 |
0.3511 |
ct_481 |
N/A |
-6.18 |
0.214715 |
76 -- 94 |
18 -- 35 |
|
|
_____________75__________________95\n_____________|___________________|\n5'-AUA...CCAUU__U___AU___________AAACA...AUU-3'\n______________UC_GAA__CUGUUCUAUGG\n______________||_|||__||:|||:||||\n______________AG_CUU__GAUAAGGUACC\n3'-UUU...AUCUC__U___C____________GCAAU...GAA-5'\n_____________|___________________|\n_____________36__________________17\n |
88 -- 94 |
18 -- 24 |
-16.4052 kcal/mol |
5.24588 kcal/mol |
4.97803 kcal/mol |
75 95@LB@ | |@LB@5'-AUA...CCAUU U AU AAACA...AUU-3'@LB@ UC GAA CUGUUCUAUGG@LB@ || ||| ||:|||:||||@LB@ AG CUU GAUAAGGUACC@LB@3'-UUU...AUCUC U C GCAAU...GAA-5'@LB@ | |@LB@ 36 17@LB@@LB@@LB@Energy -6.18 kcal/mol@LB@Hybridization Energy -16.4052 kcal/mol@LB@Unfolding Energy - mRNA 5.24588 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 76 -- 94@LB@Position - sRNA 18 -- 35@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 18 -- 24@LB@ |
177 |
0.07605 |
0.3532 |
ct_428 |
ubiE |
-3.67 |
0.587989 |
9 -- 17 |
20 -- 28 |
demethylmenaquinone methyltransferase |
|
_____________8_________18\n_____________|_________|\n___5'-UUCUUCAA_________UUCAG...AUA-3'\n______________CUAUUUCAU\n______________|||||:|||\n______________GAUAAGGUA\n3'-UUU...UCUUC_________CCGCA...GAA-5'\n_____________|_________|\n_____________29________19\n |
10 -- 16 |
21 -- 27 |
-8.26525 kcal/mol |
0.050804 kcal/mol |
4.54807 kcal/mol |
8 18@LB@ | |@LB@ 5'-UUCUUCAA UUCAG...AUA-3'@LB@ CUAUUUCAU@LB@ |||||:|||@LB@ GAUAAGGUA@LB@3'-UUU...UCUUC CCGCA...GAA-5'@LB@ | |@LB@ 29 19@LB@@LB@@LB@Energy -3.67 kcal/mol@LB@Hybridization Energy -8.26525 kcal/mol@LB@Unfolding Energy - mRNA 0.050804 kcal/mol@LB@Unfolding Energy - sRNA 4.54807 kcal/mol@LB@@LB@Position - mRNA 9 -- 17@LB@Position - sRNA 20 -- 28@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 21 -- 27@LB@ |
178 |
0.07667 |
0.3541 |
ct_386 |
N/A |
-3.82 |
0.559485 |
134 -- 140 |
82 -- 88 |
|
|
_____________133_____141\n_____________|_______|\n5'-CUU...UUUGG_______ACUAC...AGA-3'\n______________AUAUGGU\n______________|||:||:\n______________UAUGCCG\n3'-UUU...GCCUC_______AUUGA...GAA-5'\n_____________|_______|\n_____________89______81\n |
134 -- 140 |
82 -- 88 |
-6.88346 kcal/mol |
1.9622 kcal/mol |
1.09753 kcal/mol |
133 141@LB@ | |@LB@5'-CUU...UUUGG ACUAC...AGA-3'@LB@ AUAUGGU@LB@ |||:||:@LB@ UAUGCCG@LB@3'-UUU...GCCUC AUUGA...GAA-5'@LB@ | |@LB@ 89 81@LB@@LB@@LB@Energy -3.82 kcal/mol@LB@Hybridization Energy -6.88346 kcal/mol@LB@Unfolding Energy - mRNA 1.9622 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 134 -- 140@LB@Position - sRNA 82 -- 88@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 82 -- 88@LB@ |
179 |
0.07718 |
0.3544 |
ct_781 |
lysS |
-5.99 |
0.234962 |
194 -- 201 |
79 -- 86 |
lysine--tRNA ligase |
|
_____________193______202\n_____________|________|\n5'-AAA...AAAGG________UGUCU...AUC-3'\n______________ACGGUUGA\n______________||||:|:|\n______________UGCCGAUU\n3'-UUU...CUCUA________GAGGU...GAA-5'\n_____________|________|\n_____________87_______78\n |
195 -- 201 |
79 -- 85 |
-9.06205 kcal/mol |
1.97593 kcal/mol |
1.09752 kcal/mol |
193 202@LB@ | |@LB@5'-AAA...AAAGG UGUCU...AUC-3'@LB@ ACGGUUGA@LB@ ||||:|:|@LB@ UGCCGAUU@LB@3'-UUU...CUCUA GAGGU...GAA-5'@LB@ | |@LB@ 87 78@LB@@LB@@LB@Energy -5.99 kcal/mol@LB@Hybridization Energy -9.06205 kcal/mol@LB@Unfolding Energy - mRNA 1.97593 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 194 -- 201@LB@Position - sRNA 79 -- 86@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 79 -- 85@LB@ |
180 |
0.07821 |
0.3571 |
ct_831 |
murB |
-7.63 |
0.104376 |
230 -- 248 |
17 -- 33 |
UDP-N-acetylenolpyruvoylglucosamine reductase |
|
_____________229_________________249\n_____________|___________________|\n5'-GUU...GUUCA____U_________UAA__CGCUU...UAA-3'\n______________AGAA_CUGUUCCAU___GC\n______________||||_||:||||||___||\n______________UCUU_GAUAAGGUA___CG\n3'-UUU...CUCAG____C_________C____CAAUC...GAA-5'\n_____________|___________________|\n_____________34__________________16\n |
237 -- 243 |
20 -- 26 |
-14.8604 kcal/mol |
2.25495 kcal/mol |
4.97804 kcal/mol |
229 249@LB@ | |@LB@5'-GUU...GUUCA U UAA CGCUU...UAA-3'@LB@ AGAA CUGUUCCAU GC@LB@ |||| ||:|||||| ||@LB@ UCUU GAUAAGGUA CG@LB@3'-UUU...CUCAG C C CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -14.8604 kcal/mol@LB@Unfolding Energy - mRNA 2.25495 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 230 -- 248@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 20 -- 26@LB@ |
181 |
0.07898 |
0.3587 |
ct_186 |
devB |
-5.59 |
0.281766 |
201 -- 207 |
80 -- 86 |
6-phosphogluconolactonase |
|
_____________200_____208\n_____________|_______|\n5'-GAA...UAUAC_______CCCUU...CAG-3'\n______________AUGGCUA\n______________|:|||||\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
201 -- 207 |
80 -- 86 |
-9.11344 kcal/mol |
2.46127 kcal/mol |
1.06449 kcal/mol |
200 208@LB@ | |@LB@5'-GAA...UAUAC CCCUU...CAG-3'@LB@ AUGGCUA@LB@ |:|||||@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -5.59 kcal/mol@LB@Hybridization Energy -9.11344 kcal/mol@LB@Unfolding Energy - mRNA 2.46127 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 201 -- 207@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 80 -- 86@LB@ |
182 |
0.07944 |
0.3588 |
ct_320 |
nusG |
-7.37 |
0.119406 |
230 -- 236 |
81 -- 87 |
transcription termination/antitermination protein NusG |
|
_____________229_____237\n_____________|_______|\n5'-AAC...GUUUU_______CAAGA...UUA-3'\n______________UACGGCU\n______________|||||||\n______________AUGCCGA\n3'-UUU...CCUCU_______UUGAG...GAA-5'\n_____________|_______|\n_____________88______80\n |
230 -- 236 |
81 -- 87 |
-10.814 kcal/mol |
2.34788 kcal/mol |
1.09752 kcal/mol |
229 237@LB@ | |@LB@5'-AAC...GUUUU CAAGA...UUA-3'@LB@ UACGGCU@LB@ |||||||@LB@ AUGCCGA@LB@3'-UUU...CCUCU UUGAG...GAA-5'@LB@ | |@LB@ 88 80@LB@@LB@@LB@Energy -7.37 kcal/mol@LB@Hybridization Energy -10.814 kcal/mol@LB@Unfolding Energy - mRNA 2.34788 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 230 -- 236@LB@Position - sRNA 81 -- 87@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 81 -- 87@LB@ |
183 |
0.08019 |
0.3602 |
ct_648 |
N/A |
-7.31 |
0.122948 |
212 -- 231 |
14 -- 34 |
|
|
_____________211___________________232\n_____________|_____________________|\n5'-ACU...GUAAG________UAAG_________UAUGU...UUA-3'\n______________UAGAAGCU_____AUGGUGUU\n______________:|||||||_____||||:|||\n______________GUCUUCGA_____UACCGCAA\n3'-UUU...UCUCA________UAAGG________UCUUA...GAA-5'\n_____________|_____________________|\n_____________35____________________13\n |
225 -- 231 |
14 -- 20 |
-20.6397 kcal/mol |
4.879 kcal/mol |
8.44924 kcal/mol |
211 232@LB@ | |@LB@5'-ACU...GUAAG UAAG UAUGU...UUA-3'@LB@ UAGAAGCU AUGGUGUU@LB@ :||||||| ||||:|||@LB@ GUCUUCGA UACCGCAA@LB@3'-UUU...UCUCA UAAGG UCUUA...GAA-5'@LB@ | |@LB@ 35 13@LB@@LB@@LB@Energy -7.31 kcal/mol@LB@Hybridization Energy -20.6397 kcal/mol@LB@Unfolding Energy - mRNA 4.879 kcal/mol@LB@Unfolding Energy - sRNA 8.44924 kcal/mol@LB@@LB@Position - mRNA 212 -- 231@LB@Position - sRNA 14 -- 34@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 14 -- 20@LB@ |
184 |
0.0822 |
0.363 |
ct_497 |
dnaB |
-7.07 |
0.138978 |
138 -- 179 |
3 -- 57 |
replicative DNA helicase |
|
_____________137________________________________________________________180\n_____________|__________________________________________________________|\n5'-ACG...AUAUU_____A_____CCU________CCG____G_________UU_________________CAUAA...GUG-3'\n______________CCCCU___UAC___AAC_CUGG____AGA_AGCU__UCC____________UACCAAC\n______________|||||___|||___|||_||:|____|||_||||__|||____________|||||||\n______________GGGGA___AUG___UUG_GAUC____UCU_UCGA__AGG____________AUGGUUG\n3'-UUU...GAAGG_____CAC___U_____U____UCAG________UA___UACCGCAAUCUU_______AA-5'\n_____________|__________________________________________________________|\n_____________58_________________________________________________________2\n |
173 -- 179 |
3 -- 9 |
-29.7257 kcal/mol |
6.10481 kcal/mol |
16.5501 kcal/mol |
137 180@LB@ | |@LB@5'-ACG...AUAUU A CCU CCG G UU CAUAA...GUG-3'@LB@ CCCCU UAC AAC CUGG AGA AGCU UCC UACCAAC@LB@ ||||| ||| ||| ||:| ||| |||| ||| |||||||@LB@ GGGGA AUG UUG GAUC UCU UCGA AGG AUGGUUG@LB@3'-UUU...GAAGG CAC U U UCAG UA UACCGCAAUCUU AA-5'@LB@ | |@LB@ 58 2@LB@@LB@@LB@Energy -7.07 kcal/mol@LB@Hybridization Energy -29.7257 kcal/mol@LB@Unfolding Energy - mRNA 6.10481 kcal/mol@LB@Unfolding Energy - sRNA 16.5501 kcal/mol@LB@@LB@Position - mRNA 138 -- 179@LB@Position - sRNA 3 -- 57@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 3 -- 9@LB@ |
185 |
0.083 |
0.363 |
ct_260 |
N/A |
-8.27 |
0.074080 |
87 -- 93 |
53 -- 59 |
|
|
_____________86______94\n_____________|_______|\n5'-GUU...CCCCC_______CCCAU...UCA-3'\n______________CCCCCCU\n______________|||||||\n______________GGGGGGA\n3'-UUU...CUGAA_______CACAU...GAA-5'\n_____________|_______|\n_____________60______52\n |
87 -- 93 |
53 -- 59 |
-14.3095 kcal/mol |
0.558947 kcal/mol |
5.47887 kcal/mol |
86 94@LB@ | |@LB@5'-GUU...CCCCC CCCAU...UCA-3'@LB@ CCCCCCU@LB@ |||||||@LB@ GGGGGGA@LB@3'-UUU...CUGAA CACAU...GAA-5'@LB@ | |@LB@ 60 52@LB@@LB@@LB@Energy -8.27 kcal/mol@LB@Hybridization Energy -14.3095 kcal/mol@LB@Unfolding Energy - mRNA 0.558947 kcal/mol@LB@Unfolding Energy - sRNA 5.47887 kcal/mol@LB@@LB@Position - mRNA 87 -- 93@LB@Position - sRNA 53 -- 59@LB@Position Seed - mRNA 87 -- 93@LB@Position Seed - sRNA 53 -- 59@LB@ |
186 |
0.08332 |
0.363 |
ct_811 |
plsX |
-5.83 |
0.252304 |
163 -- 171 |
79 -- 87 |
phosphate acyltransferase |
|
_____________162_______172\n_____________|_________|\n5'-GGC...GUUAU_________GAAGU...AAC-3'\n______________UACGGUUGA\n______________|||||:|:|\n______________AUGCCGAUU\n3'-UUU...CCUCU_________GAGGU...GAA-5'\n_____________|_________|\n_____________88________78\n |
165 -- 171 |
79 -- 85 |
-10.158 kcal/mol |
3.22704 kcal/mol |
1.09752 kcal/mol |
162 172@LB@ | |@LB@5'-GGC...GUUAU GAAGU...AAC-3'@LB@ UACGGUUGA@LB@ |||||:|:|@LB@ AUGCCGAUU@LB@3'-UUU...CCUCU GAGGU...GAA-5'@LB@ | |@LB@ 88 78@LB@@LB@@LB@Energy -5.83 kcal/mol@LB@Hybridization Energy -10.158 kcal/mol@LB@Unfolding Energy - mRNA 3.22704 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 163 -- 171@LB@Position - sRNA 79 -- 87@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 79 -- 85@LB@ |
187 |
0.08358 |
0.363 |
ct_041 |
N/A |
-5.64 |
0.274890 |
141 -- 160 |
41 -- 59 |
|
|
_____________140__________________161\n_____________|____________________|\n5'-UUU...UGCAA________GCA_________CUUAA...CUA-3'\n______________CCCCUUUG___UAUGAACAU\n______________||||::||___||::||||:\n______________GGGGGGAC___AUGUUUGUG\n3'-UUU...CUGAA________AC__________AUCUC...GAA-5'\n_____________|____________________|\n_____________60___________________40\n |
142 -- 148 |
52 -- 58 |
-19.5521 kcal/mol |
5.08593 kcal/mol |
8.82318 kcal/mol |
140 161@LB@ | |@LB@5'-UUU...UGCAA GCA CUUAA...CUA-3'@LB@ CCCCUUUG UAUGAACAU@LB@ ||||::|| ||::||||:@LB@ GGGGGGAC AUGUUUGUG@LB@3'-UUU...CUGAA AC AUCUC...GAA-5'@LB@ | |@LB@ 60 40@LB@@LB@@LB@Energy -5.64 kcal/mol@LB@Hybridization Energy -19.5521 kcal/mol@LB@Unfolding Energy - mRNA 5.08593 kcal/mol@LB@Unfolding Energy - sRNA 8.82318 kcal/mol@LB@@LB@Position - mRNA 141 -- 160@LB@Position - sRNA 41 -- 59@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 52 -- 58@LB@ |
188 |
0.08401 |
0.363 |
ct_024 |
N/A |
-5.57 |
0.284242 |
184 -- 199 |
20 -- 35 |
release factor glutamine methyltransferase |
|
_____________183______________200\n_____________|________________|\n5'-AGA...GUACA____C________G__CAUGA...AGA-3'\n______________UCGG_AGCUAUUC_GU\n______________||:|_||||||||_:|\n______________AGUC_UCGAUAAG_UA\n3'-UUU...AUCUC____U________G__CCGCA...GAA-5'\n_____________|________________|\n_____________36_______________19\n |
190 -- 196 |
23 -- 29 |
-16.0617 kcal/mol |
5.57694 kcal/mol |
4.91708 kcal/mol |
183 200@LB@ | |@LB@5'-AGA...GUACA C G CAUGA...AGA-3'@LB@ UCGG AGCUAUUC GU@LB@ ||:| |||||||| :|@LB@ AGUC UCGAUAAG UA@LB@3'-UUU...AUCUC U G CCGCA...GAA-5'@LB@ | |@LB@ 36 19@LB@@LB@@LB@Energy -5.57 kcal/mol@LB@Hybridization Energy -16.0617 kcal/mol@LB@Unfolding Energy - mRNA 5.57694 kcal/mol@LB@Unfolding Energy - sRNA 4.91708 kcal/mol@LB@@LB@Position - mRNA 184 -- 199@LB@Position - sRNA 20 -- 35@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 23 -- 29@LB@ |
189 |
0.0841 |
0.363 |
ct_792 |
mutS |
-5.18 |
0.336119 |
140 -- 151 |
22 -- 33 |
DNA mismatch repair protein MutS |
|
_____________139__________152\n_____________|____________|\n5'-AUA...ACAUA____C_______CCUAC...AAG-3'\n______________AGAG_CUGUUCC\n______________|||:_||:||||\n______________UCUU_GAUAAGG\n3'-UUU...CUCAG____C_______UACCG...GAA-5'\n_____________|____________|\n_____________34___________21\n |
145 -- 151 |
22 -- 28 |
-12.2041 kcal/mol |
2.29966 kcal/mol |
4.72509 kcal/mol |
139 152@LB@ | |@LB@5'-AUA...ACAUA C CCUAC...AAG-3'@LB@ AGAG CUGUUCC@LB@ |||: ||:||||@LB@ UCUU GAUAAGG@LB@3'-UUU...CUCAG C UACCG...GAA-5'@LB@ | |@LB@ 34 21@LB@@LB@@LB@Energy -5.18 kcal/mol@LB@Hybridization Energy -12.2041 kcal/mol@LB@Unfolding Energy - mRNA 2.29966 kcal/mol@LB@Unfolding Energy - sRNA 4.72509 kcal/mol@LB@@LB@Position - mRNA 140 -- 151@LB@Position - sRNA 22 -- 33@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 22 -- 28@LB@ |
190 |
0.08414 |
0.363 |
ct_503 |
N/A |
-6.17 |
0.215667 |
244 -- 250 |
81 -- 87 |
|
|
_____________243_____251\n_____________|_______|\n5'-UGG...UUUGU_______UCGCA...CUC-3'\n______________UACGGUU\n______________|||||:|\n______________AUGCCGA\n3'-UUU...CCUCU_______UUGAG...GAA-5'\n_____________|_______|\n_____________88______80\n |
244 -- 250 |
81 -- 87 |
-7.94334 kcal/mol |
0.67364 kcal/mol |
1.09752 kcal/mol |
243 251@LB@ | |@LB@5'-UGG...UUUGU UCGCA...CUC-3'@LB@ UACGGUU@LB@ |||||:|@LB@ AUGCCGA@LB@3'-UUU...CCUCU UUGAG...GAA-5'@LB@ | |@LB@ 88 80@LB@@LB@@LB@Energy -6.17 kcal/mol@LB@Hybridization Energy -7.94334 kcal/mol@LB@Unfolding Energy - mRNA 0.67364 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 244 -- 250@LB@Position - sRNA 81 -- 87@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 81 -- 87@LB@ |
191 |
0.08461 |
0.363 |
ct_112 |
pepF |
-2.97 |
0.715117 |
121 -- 127 |
54 -- 60 |
oligoendopeptidase F |
|
_____________120_____128\n_____________|_______|\n5'-UCU...UCUCU_______ACUGG...AAG-3'\n______________UCCCCUU\n______________|||||::\n______________AGGGGGG\n3'-UUU...ACUGA_______ACACA...GAA-5'\n_____________|_______|\n_____________61______53\n |
121 -- 127 |
54 -- 60 |
-10.8708 kcal/mol |
1.46061 kcal/mol |
6.44182 kcal/mol |
120 128@LB@ | |@LB@5'-UCU...UCUCU ACUGG...AAG-3'@LB@ UCCCCUU@LB@ |||||::@LB@ AGGGGGG@LB@3'-UUU...ACUGA ACACA...GAA-5'@LB@ | |@LB@ 61 53@LB@@LB@@LB@Energy -2.97 kcal/mol@LB@Hybridization Energy -10.8708 kcal/mol@LB@Unfolding Energy - mRNA 1.46061 kcal/mol@LB@Unfolding Energy - sRNA 6.44182 kcal/mol@LB@@LB@Position - mRNA 121 -- 127@LB@Position - sRNA 54 -- 60@LB@Position Seed - mRNA 121 -- 127@LB@Position Seed - sRNA 54 -- 60@LB@ |
192 |
0.08479 |
0.363 |
ct_293 |
accD |
-5.01 |
0.360945 |
270 -- 276 |
79 -- 85 |
acetyl-CoA carboxylase carboxyltransferase subunit beta |
|
_____________269_____277\n_____________|_______|\n5'-GUA...GUGGC_______AAUGU...UGA-3'\n______________UGGCUAA\n______________:||||||\n______________GCCGAUU\n3'-UUU...UCUAU_______GAGGU...GAA-5'\n_____________|_______|\n_____________86______78\n |
270 -- 276 |
79 -- 85 |
-7.87376 kcal/mol |
1.76808 kcal/mol |
1.09751 kcal/mol |
269 277@LB@ | |@LB@5'-GUA...GUGGC AAUGU...UGA-3'@LB@ UGGCUAA@LB@ :||||||@LB@ GCCGAUU@LB@3'-UUU...UCUAU GAGGU...GAA-5'@LB@ | |@LB@ 86 78@LB@@LB@@LB@Energy -5.01 kcal/mol@LB@Hybridization Energy -7.87376 kcal/mol@LB@Unfolding Energy - mRNA 1.76808 kcal/mol@LB@Unfolding Energy - sRNA 1.09751 kcal/mol@LB@@LB@Position - mRNA 270 -- 276@LB@Position - sRNA 79 -- 85@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 79 -- 85@LB@ |
193 |
0.08525 |
0.3631 |
ct_196 |
N/A |
-5.32 |
0.316248 |
140 -- 149 |
20 -- 29 |
inclusion membrane protein |
|
_____________139________150\n_____________|__________|\n5'-UUU...AUAAU__________UUCUU...AAC-3'\n______________GCUAUUUCAU\n______________||||||:|||\n______________CGAUAAGGUA\n3'-UUU...GUCUU__________CCGCA...GAA-5'\n_____________|__________|\n_____________30_________19\n |
141 -- 147 |
22 -- 28 |
-11.6207 kcal/mol |
1.68905 kcal/mol |
4.60882 kcal/mol |
139 150@LB@ | |@LB@5'-UUU...AUAAU UUCUU...AAC-3'@LB@ GCUAUUUCAU@LB@ ||||||:|||@LB@ CGAUAAGGUA@LB@3'-UUU...GUCUU CCGCA...GAA-5'@LB@ | |@LB@ 30 19@LB@@LB@@LB@Energy -5.32 kcal/mol@LB@Hybridization Energy -11.6207 kcal/mol@LB@Unfolding Energy - mRNA 1.68905 kcal/mol@LB@Unfolding Energy - sRNA 4.60882 kcal/mol@LB@@LB@Position - mRNA 140 -- 149@LB@Position - sRNA 20 -- 29@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 22 -- 28@LB@ |
194 |
0.08693 |
0.3657 |
ct_285 |
lplA_1 |
-4.48 |
0.444512 |
66 -- 74 |
27 -- 35 |
lipoate protein ligase |
|
_____________65________75\n_____________|_________|\n5'-CUU...AAUUU_________UUUUU...UUC-3'\n______________UUAGAAGCU\n______________|:|||||||\n______________AGUCUUCGA\n3'-UUU...AUCUC_________UAAGG...GAA-5'\n_____________|_________|\n_____________36________26\n |
68 -- 74 |
27 -- 33 |
-10.5389 kcal/mol |
1.46011 kcal/mol |
4.60001 kcal/mol |
65 75@LB@ | |@LB@5'-CUU...AAUUU UUUUU...UUC-3'@LB@ UUAGAAGCU@LB@ |:|||||||@LB@ AGUCUUCGA@LB@3'-UUU...AUCUC UAAGG...GAA-5'@LB@ | |@LB@ 36 26@LB@@LB@@LB@Energy -4.48 kcal/mol@LB@Hybridization Energy -10.5389 kcal/mol@LB@Unfolding Energy - mRNA 1.46011 kcal/mol@LB@Unfolding Energy - sRNA 4.60001 kcal/mol@LB@@LB@Position - mRNA 66 -- 74@LB@Position - sRNA 27 -- 35@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 27 -- 33@LB@ |
195 |
0.08712 |
0.3657 |
ct_704 |
pcnB_2 |
-3.31 |
0.654425 |
101 -- 107 |
28 -- 34 |
poly A polymerase |
|
_____________100_____108\n_____________|_______|\n5'-CAA...UACGG_______CAUCC...UGC-3'\n______________UAGAAGC\n______________:||||||\n______________GUCUUCG\n3'-UUU...UCUCA_______AUAAG...GAA-5'\n_____________|_______|\n_____________35______27\n |
101 -- 107 |
28 -- 34 |
-7.75845 kcal/mol |
0.338622 kcal/mol |
4.11458 kcal/mol |
100 108@LB@ | |@LB@5'-CAA...UACGG CAUCC...UGC-3'@LB@ UAGAAGC@LB@ :||||||@LB@ GUCUUCG@LB@3'-UUU...UCUCA AUAAG...GAA-5'@LB@ | |@LB@ 35 27@LB@@LB@@LB@Energy -3.31 kcal/mol@LB@Hybridization Energy -7.75845 kcal/mol@LB@Unfolding Energy - mRNA 0.338622 kcal/mol@LB@Unfolding Energy - sRNA 4.11458 kcal/mol@LB@@LB@Position - mRNA 101 -- 107@LB@Position - sRNA 28 -- 34@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 28 -- 34@LB@ |
196 |
0.08741 |
0.3657 |
ct_698 |
N/A |
-4.23 |
0.486304 |
280 -- 292 |
22 -- 34 |
tRNA modification GTPase |
|
_____________279___________293\n_____________|_____________|\n5'-AAA...CGGAC____U________UAUUUCUG-3'\n______________CGGA_GCUAUUUC\n______________|:||_||||||:|\n______________GUCU_CGAUAAGG\n3'-UUU...UCUCA____U________UACCG...GAA-5'\n_____________|_____________|\n_____________35____________21\n |
285 -- 291 |
23 -- 29 |
-13.8571 kcal/mol |
4.89721 kcal/mol |
4.72608 kcal/mol |
279 293@LB@ | |@LB@5'-AAA...CGGAC U UAUUUCUG-3'@LB@ CGGA GCUAUUUC@LB@ |:|| ||||||:|@LB@ GUCU CGAUAAGG@LB@3'-UUU...UCUCA U UACCG...GAA-5'@LB@ | |@LB@ 35 21@LB@@LB@@LB@Energy -4.23 kcal/mol@LB@Hybridization Energy -13.8571 kcal/mol@LB@Unfolding Energy - mRNA 4.89721 kcal/mol@LB@Unfolding Energy - sRNA 4.72608 kcal/mol@LB@@LB@Position - mRNA 280 -- 292@LB@Position - sRNA 22 -- 34@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 23 -- 29@LB@ |
197 |
0.08765 |
0.3657 |
ct_851 |
map |
-5.60 |
0.279866 |
107 -- 113 |
81 -- 87 |
methionine aminopeptidase |
|
_____________106_____114\n_____________|_______|\n5'-GCU...CUUUC_______UUCAA...AAC-3'\n______________UACGGCU\n______________|||||||\n______________AUGCCGA\n3'-UUU...CCUCU_______UUGAG...GAA-5'\n_____________|_______|\n_____________88______80\n |
107 -- 113 |
81 -- 87 |
-10.6361 kcal/mol |
3.93565 kcal/mol |
1.09752 kcal/mol |
106 114@LB@ | |@LB@5'-GCU...CUUUC UUCAA...AAC-3'@LB@ UACGGCU@LB@ |||||||@LB@ AUGCCGA@LB@3'-UUU...CCUCU UUGAG...GAA-5'@LB@ | |@LB@ 88 80@LB@@LB@@LB@Energy -5.60 kcal/mol@LB@Hybridization Energy -10.6361 kcal/mol@LB@Unfolding Energy - mRNA 3.93565 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 107 -- 113@LB@Position - sRNA 81 -- 87@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 81 -- 87@LB@ |
198 |
0.08843 |
0.3671 |
ct_257 |
N/A |
-6.39 |
0.194258 |
76 -- 83 |
79 -- 86 |
|
|
_____________75_______84\n_____________|________|\n5'-CUA...GGCGG________CAGAA...UCA-3'\n______________AUGGCUGA\n______________|:||||:|\n______________UGCCGAUU\n3'-UUU...CUCUA________GAGGU...GAA-5'\n_____________|________|\n_____________87_______78\n |
77 -- 83 |
79 -- 85 |
-9.5904 kcal/mol |
2.10083 kcal/mol |
1.09752 kcal/mol |
75 84@LB@ | |@LB@5'-CUA...GGCGG CAGAA...UCA-3'@LB@ AUGGCUGA@LB@ |:||||:|@LB@ UGCCGAUU@LB@3'-UUU...CUCUA GAGGU...GAA-5'@LB@ | |@LB@ 87 78@LB@@LB@@LB@Energy -6.39 kcal/mol@LB@Hybridization Energy -9.5904 kcal/mol@LB@Unfolding Energy - mRNA 2.10083 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 76 -- 83@LB@Position - sRNA 79 -- 86@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 79 -- 85@LB@ |
199 |
0.0896 |
0.3683 |
ct_774 |
cysQ |
-5.35 |
0.311933 |
207 -- 214 |
53 -- 60 |
3'(2') 5'-bisphosphate nucleotidase |
|
_____________206______215\n_____________|________|\n5'-UCA...UGUUC________CAAUG...UUC-3'\n______________UCCCUCCU\n______________||||:|||\n______________AGGGGGGA\n3'-UUU...ACUGA________CACAU...GAA-5'\n_____________|________|\n_____________61_______52\n |
208 -- 214 |
53 -- 59 |
-13.0073 kcal/mol |
1.20108 kcal/mol |
6.45136 kcal/mol |
206 215@LB@ | |@LB@5'-UCA...UGUUC CAAUG...UUC-3'@LB@ UCCCUCCU@LB@ ||||:|||@LB@ AGGGGGGA@LB@3'-UUU...ACUGA CACAU...GAA-5'@LB@ | |@LB@ 61 52@LB@@LB@@LB@Energy -5.35 kcal/mol@LB@Hybridization Energy -13.0073 kcal/mol@LB@Unfolding Energy - mRNA 1.20108 kcal/mol@LB@Unfolding Energy - sRNA 6.45136 kcal/mol@LB@@LB@Position - mRNA 207 -- 214@LB@Position - sRNA 53 -- 60@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 53 -- 59@LB@ |
200 |
0.0896 |
0.3683 |
ct_487 |
yhhF |
-5.19 |
0.334580 |
14 -- 20 |
79 -- 85 |
methyltransferase |
|
_____________13______21\n_____________|_______|\n5'-ACG...UCCUC_______UAAUG...UUA-3'\n______________CGGUUAG\n______________|||:||:\n______________GCCGAUU\n3'-UUU...UCUAU_______GAGGU...GAA-5'\n_____________|_______|\n_____________86______78\n |
14 -- 20 |
79 -- 85 |
-7.01592 kcal/mol |
0.727938 kcal/mol |
1.09751 kcal/mol |
13 21@LB@ | |@LB@5'-ACG...UCCUC UAAUG...UUA-3'@LB@ CGGUUAG@LB@ |||:||:@LB@ GCCGAUU@LB@3'-UUU...UCUAU GAGGU...GAA-5'@LB@ | |@LB@ 86 78@LB@@LB@@LB@Energy -5.19 kcal/mol@LB@Hybridization Energy -7.01592 kcal/mol@LB@Unfolding Energy - mRNA 0.727938 kcal/mol@LB@Unfolding Energy - sRNA 1.09751 kcal/mol@LB@@LB@Position - mRNA 14 -- 20@LB@Position - sRNA 79 -- 85@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 79 -- 85@LB@ |