| 1 |
0 |
0 |
b3209 |
elbB |
-118.30 |
0.000000 |
1 -- 83 |
1 -- 83 |
isoprenoid biosynthesis protein with amidotransferase-like domain |
|
______________1__________________________________________________________________________________84\n______________|__________________________________________________________________________________|\n___________5'-___________________________________________________________________________________GCAGU...GUG-3'\n______________GCGCCAACACCAGGGAAAUCUUGGCUGCGCCGUAAAUUAUUAUGAUGAGUUACAAGGGCACAGCACUGUUUUUCAGGCCGCAC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________CGCGGUUGUGGUCCCUUUAGAACCGACGCGGCAUUUAAUAAUACUACUCAAUGUUCCCGUGUCGUGACAAAAAGUCCGGCGUG\n3'-UUU...UAUGA___________________________________________________________________________________-5'\n_____________|__________________________________________________________________________________|\n_____________84_________________________________________________________________________________1\n |
77 -- 83 |
1 -- 7 |
-173.12 kcal/mol |
26.3528 kcal/mol |
28.4683 kcal/mol |
1 84@LB@ | |@LB@ 5'- GCAGU...GUG-3'@LB@ GCGCCAACACCAGGGAAAUCUUGGCUGCGCCGUAAAUUAUUAUGAUGAGUUACAAGGGCACAGCACUGUUUUUCAGGCCGCAC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ CGCGGUUGUGGUCCCUUUAGAACCGACGCGGCAUUUAAUAAUACUACUCAAUGUUCCCGUGUCGUGACAAAAAGUCCGGCGUG@LB@3'-UUU...UAUGA -5'@LB@ | |@LB@ 84 1@LB@@LB@@LB@Energy -118.30 kcal/mol@LB@Hybridization Energy -173.12 kcal/mol@LB@Unfolding Energy - mRNA 26.3528 kcal/mol@LB@Unfolding Energy - sRNA 28.4683 kcal/mol@LB@@LB@Position - mRNA 1 -- 83@LB@Position - sRNA 1 -- 83@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 2 |
1.572e-09 |
2.767e-06 |
b3749 |
rbsA |
-20.95 |
0.000983 |
43 -- 64 |
65 -- 86 |
D-ribose ABC transporter ATPase |
|
_____________42_____________________65\n_____________|______________________|\n5'-UAA...GAGCA_____AAA______________ACCAU...UGG-3'\n______________GCUGC___AACACCAGGGAAAU\n______________:||||___||||||||||||||\n______________UGACG___UUGUGGUCCCUUUA\n3'-UUU...GCUUA_____CGG______________GAACC...GUG-5'\n_____________|______________________|\n_____________87_____________________64\n |
58 -- 64 |
65 -- 71 |
-31.8331 kcal/mol |
3.49898 kcal/mol |
7.38332 kcal/mol |
42 65@LB@ | |@LB@5'-UAA...GAGCA AAA ACCAU...UGG-3'@LB@ GCUGC AACACCAGGGAAAU@LB@ :|||| ||||||||||||||@LB@ UGACG UUGUGGUCCCUUUA@LB@3'-UUU...GCUUA CGG GAACC...GUG-5'@LB@ | |@LB@ 87 64@LB@@LB@@LB@Energy -20.95 kcal/mol@LB@Hybridization Energy -31.8331 kcal/mol@LB@Unfolding Energy - mRNA 3.49898 kcal/mol@LB@Unfolding Energy - sRNA 7.38332 kcal/mol@LB@@LB@Position - mRNA 43 -- 64@LB@Position - sRNA 65 -- 86@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 3 |
3.071e-06 |
0.003055 |
b2100 |
yegV |
-9.35 |
0.183884 |
5 -- 14 |
51 -- 60 |
putative kinase |
|
_____________4__________15\n_____________|__________|\n_______5'-AAUC__________CCUGU...CUU-3'\n______________GCUGCGCCGU\n______________||||||||||\n______________CGACGCGGCA\n3'-UUU...AGAAC__________UUUAA...GUG-5'\n_____________|__________|\n_____________61_________50\n |
8 -- 14 |
51 -- 57 |
-21.1769 kcal/mol |
6.95722 kcal/mol |
4.87294 kcal/mol |
4 15@LB@ | |@LB@ 5'-AAUC CCUGU...CUU-3'@LB@ GCUGCGCCGU@LB@ ||||||||||@LB@ CGACGCGGCA@LB@3'-UUU...AGAAC UUUAA...GUG-5'@LB@ | |@LB@ 61 50@LB@@LB@@LB@Energy -9.35 kcal/mol@LB@Hybridization Energy -21.1769 kcal/mol@LB@Unfolding Energy - mRNA 6.95722 kcal/mol@LB@Unfolding Energy - sRNA 4.87294 kcal/mol@LB@@LB@Position - mRNA 5 -- 14@LB@Position - sRNA 51 -- 60@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 4 |
3.471e-06 |
0.003055 |
b2099 |
yegU |
-19.38 |
0.001997 |
173 -- 198 |
64 -- 88 |
ADP-ribosylglycohydrolase family protein |
|
_____________172________________________199\n_____________|__________________________|\n5'-GUG...UCGCG_______________AA_________AAAUG...CAC-3'\n______________AUAUUGCGUUGACAC__GGGGAAGUU\n______________|||:||||:::||||__:|||||:|:\n______________UAUGACGCGGUUGUG__UCCCUUUAG\n3'-UUU...GCGCU_______________G__________AACCG...GUG-5'\n_____________|__________________________|\n_____________89_________________________63\n |
192 -- 198 |
64 -- 70 |
-32.1286 kcal/mol |
5.35868 kcal/mol |
7.38555 kcal/mol |
172 199@LB@ | |@LB@5'-GUG...UCGCG AA AAAUG...CAC-3'@LB@ AUAUUGCGUUGACAC GGGGAAGUU@LB@ |||:||||:::|||| :|||||:|:@LB@ UAUGACGCGGUUGUG UCCCUUUAG@LB@3'-UUU...GCGCU G AACCG...GUG-5'@LB@ | |@LB@ 89 63@LB@@LB@@LB@Energy -19.38 kcal/mol@LB@Hybridization Energy -32.1286 kcal/mol@LB@Unfolding Energy - mRNA 5.35868 kcal/mol@LB@Unfolding Energy - sRNA 7.38555 kcal/mol@LB@@LB@Position - mRNA 173 -- 198@LB@Position - sRNA 64 -- 88@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 5 |
5.466e-05 |
0.03849 |
b0713 |
ybgL |
-10.83 |
0.096857 |
234 -- 242 |
53 -- 61 |
UPF0271 family protein |
|
_____________233_______243\n_____________|_________|\n5'-GCC...GCGAA_________AGCGA...AUG-3'\n______________GGCUGCGCC\n______________|||||||||\n______________CCGACGCGG\n3'-UUU...UAGAA_________CAUUU...GUG-5'\n_____________|_________|\n_____________62________52\n |
236 -- 242 |
53 -- 59 |
-22.2033 kcal/mol |
6.50503 kcal/mol |
4.87107 kcal/mol |
233 243@LB@ | |@LB@5'-GCC...GCGAA AGCGA...AUG-3'@LB@ GGCUGCGCC@LB@ |||||||||@LB@ CCGACGCGG@LB@3'-UUU...UAGAA CAUUU...GUG-5'@LB@ | |@LB@ 62 52@LB@@LB@@LB@Energy -10.83 kcal/mol@LB@Hybridization Energy -22.2033 kcal/mol@LB@Unfolding Energy - mRNA 6.50503 kcal/mol@LB@Unfolding Energy - sRNA 4.87107 kcal/mol@LB@@LB@Position - mRNA 234 -- 242@LB@Position - sRNA 53 -- 61@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 6 |
0.0001378 |
0.08054 |
b3860 |
dsbA |
-12.69 |
0.042007 |
89 -- 111 |
55 -- 75 |
periplasmic protein disulfide isomerase I |
|
_____________88______________________112\n_____________|_______________________|\n5'-UUU...GGUUA_______A_____AC________ACAGA...AAC-3'\n______________ACCGGGG_AGAUU__UGGCUGCG\n______________|||:|||_|:||:__||||||||\n______________UGGUCCC_UUUAG__ACCGACGC\n3'-UUU...GGUUG_____________A_________GGCAU...GUG-5'\n_____________|_______________________|\n_____________76______________________54\n |
105 -- 111 |
55 -- 61 |
-30.5184 kcal/mol |
9.58616 kcal/mol |
8.24199 kcal/mol |
88 112@LB@ | |@LB@5'-UUU...GGUUA A AC ACAGA...AAC-3'@LB@ ACCGGGG AGAUU UGGCUGCG@LB@ |||:||| |:||: ||||||||@LB@ UGGUCCC UUUAG ACCGACGC@LB@3'-UUU...GGUUG A GGCAU...GUG-5'@LB@ | |@LB@ 76 54@LB@@LB@@LB@Energy -12.69 kcal/mol@LB@Hybridization Energy -30.5184 kcal/mol@LB@Unfolding Energy - mRNA 9.58616 kcal/mol@LB@Unfolding Energy - sRNA 8.24199 kcal/mol@LB@@LB@Position - mRNA 89 -- 111@LB@Position - sRNA 55 -- 75@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 7 |
0.0001601 |
0.08054 |
b1864 |
yebC |
-15.40 |
0.012230 |
213 -- 249 |
54 -- 89 |
UPF0082 family protein |
|
_____________212_____________________________________250\n_____________|_______________________________________|\n5'-CGU...GUCAU____AA__G___________AC_____GUAAA_______AGGAU...UAA-3'\n______________AGUA__UG_GCCAACACCAG____AUC_____GCUGCGC\n______________|:||__||_|||||||||||____|||_____|||||||\n______________UUAU__AC_CGGUUGUGGUC____UAG_____CGACGCG\n3'-UUU...CGCGC____G___G___________CCUU___AAC_________GCAUU...GUG-5'\n_____________|_______________________________________|\n_____________90______________________________________53\n |
243 -- 249 |
54 -- 60 |
-38.8431 kcal/mol |
7.10336 kcal/mol |
16.3388 kcal/mol |
212 250@LB@ | |@LB@5'-CGU...GUCAU AA G AC GUAAA AGGAU...UAA-3'@LB@ AGUA UG GCCAACACCAG AUC GCUGCGC@LB@ |:|| || ||||||||||| ||| |||||||@LB@ UUAU AC CGGUUGUGGUC UAG CGACGCG@LB@3'-UUU...CGCGC G G CCUU AAC GCAUU...GUG-5'@LB@ | |@LB@ 90 53@LB@@LB@@LB@Energy -15.40 kcal/mol@LB@Hybridization Energy -38.8431 kcal/mol@LB@Unfolding Energy - mRNA 7.10336 kcal/mol@LB@Unfolding Energy - sRNA 16.3388 kcal/mol@LB@@LB@Position - mRNA 213 -- 249@LB@Position - sRNA 54 -- 89@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 8 |
0.000265 |
0.1166 |
b1244 |
oppB |
-12.83 |
0.039495 |
280 -- 295 |
70 -- 84 |
oligopeptide ABC transporter permease |
|
_____________279______________296\n_____________|________________|\n5'-UCC...UAUGA______UC________AAGCC-3'\n______________UGCGCC__GCGCCGGG\n______________||||||__:|:||:||\n______________ACGCGG__UGUGGUCC\n3'-UUU...UUAUG______U_________CUUUA...GUG-5'\n_____________|________________|\n_____________85_______________69\n |
289 -- 295 |
70 -- 76 |
-25.4509 kcal/mol |
5.37602 kcal/mol |
7.24859 kcal/mol |
279 296@LB@ | |@LB@5'-UCC...UAUGA UC AAGCC-3'@LB@ UGCGCC GCGCCGGG@LB@ |||||| :|:||:||@LB@ ACGCGG UGUGGUCC@LB@3'-UUU...UUAUG U CUUUA...GUG-5'@LB@ | |@LB@ 85 69@LB@@LB@@LB@Energy -12.83 kcal/mol@LB@Hybridization Energy -25.4509 kcal/mol@LB@Unfolding Energy - mRNA 5.37602 kcal/mol@LB@Unfolding Energy - sRNA 7.24859 kcal/mol@LB@@LB@Position - mRNA 280 -- 295@LB@Position - sRNA 70 -- 84@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 9 |
0.0003241 |
0.1198 |
b1110 |
ycfJ |
-9.50 |
0.172514 |
224 -- 251 |
52 -- 76 |
uncharacterized protein |
|
_____________223__________________________252\n_____________|____________________________|\n5'-ACU...GCGGG_______AUU__U___GCA_________GGCGU...AAU-3'\n______________UAUCGGG___GG_GUC___GCUGCGCUG\n______________:|:|:||___|:_:||___|||||||:|\n______________GUGGUCC___CU_UAG___CGACGCGGC\n3'-UUU...CGGUU____________U___AAC_________AUUUA...GUG-5'\n_____________|____________________________|\n_____________77___________________________51\n |
245 -- 251 |
52 -- 58 |
-26.6822 kcal/mol |
7.91875 kcal/mol |
9.26585 kcal/mol |
223 252@LB@ | |@LB@5'-ACU...GCGGG AUU U GCA GGCGU...AAU-3'@LB@ UAUCGGG GG GUC GCUGCGCUG@LB@ :|:|:|| |: :|| |||||||:|@LB@ GUGGUCC CU UAG CGACGCGGC@LB@3'-UUU...CGGUU U AAC AUUUA...GUG-5'@LB@ | |@LB@ 77 51@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -26.6822 kcal/mol@LB@Unfolding Energy - mRNA 7.91875 kcal/mol@LB@Unfolding Energy - sRNA 9.26585 kcal/mol@LB@@LB@Position - mRNA 224 -- 251@LB@Position - sRNA 52 -- 76@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 10 |
0.0003497 |
0.1198 |
b2023 |
hisH |
-14.83 |
0.015853 |
226 -- 277 |
39 -- 86 |
imidazole glycerol phosphate synthase glutamine amidotransferase subunit |
|
_____________225____________________________________________________278\n_____________|______________________________________________________|\n5'-GUG...UACCG___________CUGA___C__U_______GCCA_________CACG________ACCCA...CGG-3'\n______________GCUGCGCCAAC____ACU_GG_GAAGUCU____UUGCG_CGU_____GUUAUGA\n______________:||||||||||____||:_||_|||:|||____:||||_|||_____:||||||\n______________UGACGCGGUUG____UGG_CC_CUUUAGA____GACGC_GCA_____UAAUACU\n3'-UUU...GCUUA__________________U__________ACC______G___UUUAA_______ACUCA...GUG-5'\n_____________|______________________________________________________|\n_____________87_____________________________________________________38\n |
271 -- 277 |
39 -- 45 |
-47.4338 kcal/mol |
15.6024 kcal/mol |
16.9994 kcal/mol |
225 278@LB@ | |@LB@5'-GUG...UACCG CUGA C U GCCA CACG ACCCA...CGG-3'@LB@ GCUGCGCCAAC ACU GG GAAGUCU UUGCG CGU GUUAUGA@LB@ :|||||||||| ||: || |||:||| :|||| ||| :||||||@LB@ UGACGCGGUUG UGG CC CUUUAGA GACGC GCA UAAUACU@LB@3'-UUU...GCUUA U ACC G UUUAA ACUCA...GUG-5'@LB@ | |@LB@ 87 38@LB@@LB@@LB@Energy -14.83 kcal/mol@LB@Hybridization Energy -47.4338 kcal/mol@LB@Unfolding Energy - mRNA 15.6024 kcal/mol@LB@Unfolding Energy - sRNA 16.9994 kcal/mol@LB@@LB@Position - mRNA 226 -- 277@LB@Position - sRNA 39 -- 86@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 39 -- 45@LB@ |
