Freiburg RNA Tools
metaMIR - Results
BIF
IFF
metaMIR 3236723

Input and runtime details for job 3236723 (precomputed example)

Input

? List of genes analyzed*YAP1 *WWTR1 *TP73 *TEAD1 *TEAD2 *AJUBA BMP2 BMP4 BMP7 BMPR1A BMPR2 MYC NOG SMAD1 SMAD2 SMAD3 SMAD4 TGFB1 TGFB2 TGFB3 TGFBR1 TGFBR2 TGFBR3 -NF1 -NF2 -PTEN -TP53 -CHD5 -FOXD3
? Minimum number of genes per cluster5
? Maximum number of genes per cluster15
? Minimum score to return1.1

Job ID 3236723 (server version 4.3.0)

?Job Submitted & Queued@ Wed Aug 10 06:55:28 CEST 2016
?Processing Started@ Wed Aug 10 06:55:39 CEST 2016
?metaMIR Finished & Post-Processing@ Wed Aug 10 06:57:23 CEST 2016
?Job Completed@ Wed Aug 10 06:57:23 CEST 2016
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=3236723&toolName=metaMIR ( 30 days expiry )

The job description you specified

Combined differential and core analysis

? Output download complete results [zip]

Result table

Select rows: 1-4 all
Sort by selecting a column name
miRNA Final Score Positive Combo Positive Score Positive Group Positive List
hsa-miR-6508-5p 2.218 SMAD2,SMAD3,TEAD1,TGFBR3,TP73,YAP1 2.067 6 1.9
hsa-miR-5681a 1.813 BMPR2,SMAD1,SMAD3,TEAD1,TGFBR3,WWTR1,YAP1 1.462 7 1.81
hsa-miR-548az-5p 1.222 AJUBA,BMPR2,SMAD1,SMAD4,TEAD1,TGFBR3 1.197 6 1.21
hsa-miR-4695-5p 2.307 BMP2,BMPR2,SMAD1,SMAD3,SMAD4,TEAD1,WWTR1 1.17 7 2.31
Rows: 1-4 all

Result table - repPos

Select rows: 1-10 11-20 21-23 all
Sort by selecting a column name
Gene name Rep
BMPR1A 100
BMPR2 100
SMAD2 100
SMAD3 100
SMAD4 100
TEAD1 100
TGFBR1 100
TGFBR2 100
TGFBR3 100
WWTR1 100
Rows: 1-10 11-20 21-23 all

Result table - clusterPos

Select rows: 1-10 11-20 21-30 31-37 all
Sort by selecting a column name
Gene 1 Inter Gene 2 Norm
AJUBA pp BMP2 19
BMPR1A pp BMPR2 23
SMAD2 pp SMAD3 23
SMAD4 pp TEAD1 23
TGFB2 pp TGFBR1 20
TGFBR2 pp TGFBR3 23
TP73 pp WWTR1 18
YAP1 pp AJUBA 19
BMP2 pp BMPR1A 15
BMPR2 pp SMAD2 20
Rows: 1-10 11-20 21-30 31-37 all

Job resubmission

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Results are computed with metaMIR version 1.0.0 using R 3.2.1